RNA id: XM_036990520.1


Basic Information

Item Value
RNA id XM_036990520.1
length 4908
RNA type mRNA
GC content 0.52
exon number 22
gene id atp1a3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39170273 ~ 39195284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATCGCTCACACCCACTGGCGCTTCTTCCATAGGCGGAGTGGTAGTGTGTAGAAAAGAGAGTACTGCGGCAGCCAACAGAGCCGCGGAAGGAGATCAAATCCTAAAAAACCGGAGCAGTGTGGCTTCTGAGTTTCACCGGTCTTTTACCGCAACTATCAGAGAGCAAGAGAAGGACCCGCATCCTCGCGTGATGCTCTGCTTGAGACCGCAACATTTCATTTGAAAGACGTTTAGGTGGAGAGGGAAAAGACAGTAACCTTTTTTGGAGGCAATACCATTTTGATATAATTCCACCTGAGGGGCTGACACCTCTCAAGCTTTGCATCACCTGAGGAGAGAAGCCTGACTGCGCCAACATGGGGTATGGGCGGTCGGACAGTTACCGCGTTGCTACCACGCAGGATAAAGATGGCAAATCTTCTCCCAGCAAGAAGAACAAGAAGGGGAAGGACATGGATGAACTCAAGAAAGAAGTACCGATTACGGAACACAAGATGTCCATAGAGGAGTGTTGCAGGAAGTTCAACACCGACATTGTCCAGGGTCTGACCAATGCCAAGGCGGCTGAGTTTCTGATCAGGGACGGTCCCAATTGCCTCACCCCTCCCCCGACCACCCCCGAGTGGATCAAGTTCTGTCGCCAGCTATTCGGTGGCTTCTCCATCCTGCTGTGGACCGGCGCCATCCTTTGTTTCCTGGCCTACGCCATCCAGGCCGCCACCGAGGACGAGCCGGCAGGAGACAACttgtACCTGGGTATCGTGCTCTCTGTTGTCGTCGTGGTCACCGGATGCTTCTCCTACTTCCAGGAGGCCAAGAGCTCCAAAATCATGGAGTCCTTCAAGAACATGGTGCCCCAGCAAGCGCTGGTGATCCGTGAGGGCGAGAAGATGACGATCAACGCTGAGGAGGTGGTGGCAGGAGACCTGGTGGAGGtgaagggaggagacaggatcCCCGCCGACCTCAGAGTCGTCTCTGCTCACGGCTGCAAGGTGGATAACTCCTCCCTGACTGGCGAATCAGAACCCCAGAGCAGGTCACCTGACTGTACCCATGATAACCCCCTGGAGACCCGCAATGTCGCTTTCTTCTCTACCAACTGCGTTGAAGgtacgGCGCGTGGCATCGTGGTGTGTACTGGCGACCGTACCGTCATGGGCCGTATTGCCACTCTCACCTCCGGTCTGGAGTCGGGCAAGACCCCCATCGCCAAGGAGATCGAGCACTTCATCCACCTGATCACAGGCGTGGCTGTGTTCCTGGGCATCACCTTCTTCATCCTGGCCGTCTGCCTGGGATACACCTGGCTGGAGGCCGTCATCTTCCTCATCGGCATCATTGTGGCCAATGTCCCTGAGGGCTTACTGGCTACTGTCACTgTGTGTCTGACTCTGACTGCCAAGCGTATGGCTAAGAAGAACTGCCTGGTCAAGAATCTGGAAGCTGTGGAGACCCTAGGCTCCACCTCCACCATCTGCTCCGACAAGACTGGCACACTGACCCAGAACAGGATGACTGTGGCCCACATGTGGTTCGACAACCAGATCCACGAGGCTGACACCACAGAGGACCAGTCTGgtgCCTCCTTCGACAAGACCTCAGCCTCATGGGCTGCCCTGGCTCGCGTCGCAGCTCTCTGCAACCGCGCCGTGTTCAAAGCCGGCCAGGACCAACTGCCCATCCTGAAGAGGGACACCGCTGGTGATGCCTCCGAGTCTGCCCTGCTCAAGTGTATCGAGCTGTCCTGTGGCTCTGTCAAACAAATAAGGGAGAAGAACAAGAAGGTGGCCGAGATCCCATTCAACTCCACCAACAAGTACCAGCTCTCAGTTCACGAGACAGAGGATCCCAATGACAACCGCTACCTGCTGGTGATGAAGGGAGCCCCAGAGAGGATCCTGGACCGCtgcaccaccatcatcatccagGGCAAGGAACAGCCCATGGATGAGGAGATGAAGGAATCCTTCCAGAACGCCTACATGGAGCTtggaggactgggagagagagtactcgGTTTCTGCCACCTGCTAATGCCAGAGGACCAGTACCCCAAGGGCTTTGCCTTCGACTGTGATGACGTCAACTTCACCACAGAGAGCCTGTGCTTCGTGGGCCTCATGTCCATGATTGACCCTCCCCGTGCCGCTGTGCCTGACGCTGTGGGCAAATGCCGTTCGGCTGGCATCAAAGTCATCATGGTGACAGGTGATCATCCAATCACTGCCAAGGCCATCGCTAAGGGCGTGGGCATCATCTCCGAGGGCAACGAGACAGTGGAGGACATCGCCTCTCGCCTCAATATCCCTGTCAGCCAGGTCAACCCAAGggaTGCCAAGGCTTGTGTGATCCATGGTACAGACCTGAAGGAATTGTCTCAGGATCAGATGGACGACATCCTTAGAAACCACACTGAGATTGTGTTTGCCAGGACCTCCCCCCAGCAGAAACTCATCATCGTAGAGGGCTGCCAGCgactgGGTGCCATCGTGGCTGTGACAGGTGACGGTGTAAATGACTCTCCTGCCCTGAAGAAGGCTGACATCGGCGTTGCCATGGGAATCTCCGGCTCTGACGTATCCAAGCAGGCCGCTGACATGATCCTGCTGGACGACAACTTTGCCTCCATCGTCACCGGAGTGGAAGAGGGCCGTCTGATCTTTGATAACCTGAAGAAGTCCATTGCCTACACCCTGACCAGTAACATCCCTGAGATCAcacccttcctcctcttcatcatcgtCAACATCCCCCTACCACTGGGAACCATCACCATCCTCTGTATCGACCTGGGAACTGACATGgtgCCCGCCATCTCCCTGGCCTATGAGGCAGCCGAGAGTGACATCATGAAGCGTCAGCCCAGGAACCCCACCAGAGACAAGCTGGTGAACGAGAGGCTCATCAGCATCGCCTACGGACAAATCGGTATGATCCAGGCTCTGGGAGGTTTCTTCTCCTACTTTGTGATCTTGGCTGAGAATGGCTTCCTACCCTCAATTCTTGTGGGTATCAGGCTCAACTGGGACGACCGCGCTTGCAACGACCTGGAAGACAGCTATGGCCAGCAATGGaCATATGAACAGAGGAAGATCGTGGAGTTCACGTGTCACACAGCCTTCTTCGTCAGTATCGTGGTGGTACAGTGGGCTGATGTCATTGTCTGCAAGACCAGGCGTAACTCTGTCTTCCAGCAGGGCATGAAGAACAAGATCCTGATCTTTGGCCTGTTTGAGGAGACAGCTCTGGCTGCCTTCCTATCCTACACCCCAGGCATGGACGTGGCACTCAGGATGTTCCCCCTAAAgCCCAGCTGGTGGTTCTGTGCGGTCCCCTACAGTGTCCTCATTTTTGTGTATGATGAGATCCGAAAACTGCTCATCCGTAGGAACCCAGGAGGTTGGGTGGAAAGGGAGACATACTATTGAGCGATGGAAACCGTCTTTACTCATACCCctacattttccatttgtttctcCCCCCCCTTCATTCCATCCCTGGCAAGACACGTCTTCAGATGCCCCACCCCGTAAAAGACAACGACCGCTTCAAAGCAATTTTCATCACAACTGCCCCAAAGATTAAAAACAGCAAAGCACCTTTACGACTTCctacatcacccccccccccccccccctccatctcctatGATACTCTTTGCATGTGTTCTCTCACTGCTGTGTACATAAACCAATATATCTACCAAACGGCAGCTGCATATTGTGTATGTAGATTTGAATGAGCTATGATCTTAAAGGGAGTGTCGACGCTCGGCAAAAAAAGGGCCATACcactccttcctcccttccctttctcccccctcccctctatacctctgttcctccctctcttcctcctcctgcaaCCCTTTGCTTGCCCTCCggtcacacacagacatacagatcACGAGCGAGATCCCACAGCTAACACCAATCGAGCCGTCCCCTCTCGCCCTCTCCTTTCTCCAGGAGGAAGAGCGGATGTCTTTCTCACTCCGACCATTTTCCTTTTTCTtcaacagtgttgttgtttttttttataaaatggGGTGGGGGTTCAATGGTtttacttgttttttttatttatataaagGGAGGGGAGTGTGTGAGAGCTGCTTTCCCTCATTTAGGCATAACAAAGCACACCCCGCCATGGCGTCCCCGgtccccctttctgtctctcacaccctcctctcccctctactccctgttTGTCTACGTTTGTGTGCACTGTGTGAACCATTGTCCTTGTTAAATACTACAGTACACAACCCAGTTGGAAAATACAACTCAATCTTTCTGTGTGTTCTAGGAAAACTATATAATTCTATACCGATTTAAAGAAATAAAAATGATAtgttgaaaataaaacatctcaagATATACATTCAATGAAAAAGAACATCGGCGACATTGTTGAGCGTGTTATGGGAAAAGAGGAAAGATCACTCTGTTTCCTTTCTTTGTATGGTTTCCAATCTTTTTTTCGCCGGGTTTTCAGAAAGCCGATGCAAAAacgtaacaaaaaaaaaccccacaAAAAACAACAGCGACAAGGTTGTGTTTTATTATTAAAAGATGCGAGACAGAAACTATGGCGTCCATATTCCTGCTACCACTTCTGACGTGCCGGTGCAATGTGGTGTGATTATTTGGTGTGAGATGATGAGTCCATGTTCCTGGAGTCCGGTCCAGTCTAGGTGACACAGTCCAGGTATTGAGTTCCGTGTGAATGTCTGCATTGGAGACCAGCAGAGGAACAGCCATTTCAGGCTGGGTCTTACTCAGAGGGCTGTAGGTGGGTTGAGACTACAGAGGAAGTAAAAAAACAGTCGTAGAACATGTGTGTGAAAGAATATGAAACCAACACCAATAAAACATCTAGAACATTTAATACAACCta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161718 lncRNA upstream 1534 39168466 ~ 39168739 (+) True G140707
TU161716 lncRNA upstream 3622 39166274 ~ 39166651 (+) True G140705
TU161714 lncRNA upstream 5080 39164862 ~ 39165193 (+) True G140703
TU161712 lncRNA upstream 6947 39163117 ~ 39163326 (+) True G140701
TU161711 lncRNA upstream 7372 39162701 ~ 39162901 (+) True G140700
TU161668 lncRNA downstream 35335 39230619 ~ 39231307 (+) False G140658
TU161667 lncRNA downstream 35842 39231126 ~ 39231565 (+) True G140658
TU161770 lncRNA downstream 113385 39308669 ~ 39325188 (+) True G140753
TU161774 lncRNA downstream 130924 39326208 ~ 39326426 (+) True G140757
TU161775 lncRNA downstream 134041 39329325 ~ 39329577 (+) True G140758
XM_021561973.2 mRNA upstream 125616 39000721 ~ 39044657 (+) False LOC110489280
XM_021561959.2 mRNA upstream 179803 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 196316 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 204772 38965348 ~ 38965501 (+) True LOC118944175
XM_021561873.2 mRNA upstream 218162 38942222 ~ 38952111 (+) False LOC110489231
XR_005039454.1 mRNA downstream 39076 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 41243 39236527 ~ 39255787 (+) False LOC110489329
XM_021562060.2 mRNA downstream 41243 39236527 ~ 39255787 (+) False LOC110489329
XM_036947879.1 mRNA downstream 41243 39236527 ~ 39255787 (+) False LOC110489329
XM_021562066.2 mRNA downstream 52060 39247344 ~ 39255790 (+) True LOC110489329
TU160072 other upstream 1118529 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1226261 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1229559 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1248203 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2344011 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2773090 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2773090 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3315046 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4535588 43730872 ~ 43731218 (+) True G146054

Expression Profile