RNA id: XM_036947872.1


Basic Information

Item Value
RNA id XM_036947872.1
length 1906
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110489287
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39197666 ~ 39209506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTGTTTGTAGCTATTCGTTTTCATATGCAATGATAGGATAGTGGCTAAACGTAGCAATAATTGACATGAAGGAATGGTGATGTGGCTGTTGTTAAGGCTTCTTCGTTATTtactatttaaaaaatCCTACATCTTTCCTACATCGGCATCAGTTACTCTAATGACATCTGGTGTCCCAAAGGGTGAGAACTGCCTTGTAGACATGGACTCCAAGGCAGGGGATCTCTTCAGTGCTGAGCCAGCCGACGCTGCTGGATCCGGAGGTGTCGTGGGAAACCTACCACTAAAGGAACTAGATGGTTTTCCAACCTGGCTTTCTGCCTTGCCTCACAGGCTGTGGCTGCCCAAAGGCCTCTCGGCCAGTGTGGCCAAGGAGTGGTTTGATCGTCGCCGTGCGTCCATCCGGCCCTGGGCTGGTTTCGTGGATCATAGGAAGTTCACCAAGCCCCGCAACTTTGGCGAACTGTGCCAGAGGGTGGTGCGCAATTTTGACACCTACAACAGCAACTACACCTTCATCTTCCTCGGCCTCATCCTCTACTGCATTATCAGCTCTCCCATGCTGTTGATTGCTTTGGCAGTGTTTGTTGGTGCCTTCTACATCATCCACCTCAAGTCCCTGGAGTCTAAACTGGTCGTCTTTGGAAAAGAGGTGACCGGACCTCACCAATTGGGTCTGGCTGGGGCGGTCTCTTTACCTGTGTTCTGGTTGGCTGGTGCGGGAGCTGCAGTGTTTTGGGTCCTGGGAGCGACGATGTTTGTGATTGGCTCTCACGCTGCCTTCCGAGAGCTGGAGGGAGGATCGGAAATGGAGGAGCTCTTCATGGAGCCTGTGTGAGGGCATAGCGATAGAGGAATCtttatctgtgccattatagcatctgtgagcattggcagtgccattgaggctaCAACCCATAGGGAATCCCCACACGGGTGATTACTTTAAAATGGCAGAagcatggtggaagccctcaatggtgctgcccatgctaaagtagccttttggccactagaggcctctatctttctctgtgtGAACCCTCAACACTCACCTTTGACCTTTCATAATATAAGACAGAATGCACCTTCTCTTGCCTCTAAAGTAATTTGCTGTTACTGACCATCTACAactcttttaaaaccacaataaTACTCaatttagaaaaatatatatgGATTGACTGTCATACACACAGAGTGACTGAGATGTCCATATACCTCAGCACATACTTCATACTGTATGTCTTTTCCAAATGTGACTGATACCTCTCGATCTGTGTTTAATACACATTTCTTCCCGTGAAGTATCAGTCAGCCCTTTGTTTAATGCCTCTGTACCTTCTGTTTAATGTTACCTTGTGGATATCTAATAATACAAAATGTCAACTCAAGACCTGACATGTTACAAAGAGCTTTAACATCGCCACCGTAATAATtcagattaaataaaaaaaaatcatatataGCTGATGTTGAATTAGTCCACAGTGAGCACATGAGCAACTGGATGAGGCAAGTGTCATCAAATCGCCAACGCTTCTCTGACTGGGGAAGAAGTGCCATTTGCAGCTTTACAATGTATTTATCCAACTAGAAGAAATGGTTATTTTAGGCAAATTGCATTTACTTTAAAGCAATGCTTAGTGGATATTCCAGATACCTAATGGTGATAAAGCATTATGTTTAAATCCTACTTTTAGTTGTATGCAGGCATGTGGTGCAGTGTTGTTGGGTCATTTTTCATCATTTATTAGCTCTGCTTTATTACTTTGAGAATTTAAATGTCAATattgtttttttaaaatatatatttcatacTTGTCATGCTATCTTTttgctattttttattttttttaatgacaatTGGGAAGTGCAATAAACTGTTCTACCTGTAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162006 lncRNA downstream 1122 39196230 ~ 39196544 (-) True G140963
TU161950 lncRNA downstream 2385 39192136 ~ 39195281 (-) True G140907
TU162001 lncRNA downstream 32243 39164972 ~ 39165423 (-) True G140958
TU162000 lncRNA downstream 34025 39163385 ~ 39163641 (-) True G140957
TU161996 lncRNA downstream 40959 39156483 ~ 39156707 (-) True G140953
TU162041 lncRNA upstream 31807 39240917 ~ 39248171 (-) True G140997
TU162048 lncRNA upstream 41155 39250265 ~ 39251111 (-) True G141003
TU162096 lncRNA upstream 118000 39327110 ~ 39327389 (-) True G141046
TU162111 lncRNA upstream 179611 39388721 ~ 39388929 (-) True G141061
TU162123 lncRNA upstream 190513 39399623 ~ 39399857 (-) True G141073
XM_021561924.2 mRNA downstream 213694 38975605 ~ 38983972 (-) True LOC110489261
XM_021561889.2 mRNA downstream 233886 38952824 ~ 38963780 (-) True LOC110489249
XM_021561900.2 mRNA downstream 233887 38952824 ~ 38963779 (-) False LOC110489249
XM_021561909.2 mRNA downstream 238675 38952824 ~ 38958991 (-) False LOC110489249
XM_021561815.2 mRNA downstream 305620 38858506 ~ 38892046 (-) True LOC110489192
XM_036947878.1 mRNA upstream 9441 39218551 ~ 39220640 (-) True LOC118939935
XM_021562054.2 mRNA upstream 19702 39228812 ~ 39233769 (-) True LOC110489325
XM_021562147.2 mRNA upstream 129079 39338189 ~ 39347510 (-) False LOC110489429
XM_021562142.2 mRNA upstream 129079 39338189 ~ 39347511 (-) True LOC110489429
XM_021562183.2 mRNA upstream 141822 39350932 ~ 39365871 (-) False LOC110489468
TU161916 other downstream 133248 39063862 ~ 39064418 (-) True G140879
TU161480 other downstream 369471 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 1149000 38046702 ~ 38048666 (-) False LOC110489105
TU160231 other downstream 1149319 38046702 ~ 38048347 (-) False LOC110489105
TU162487 other upstream 554823 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 554823 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 555397 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 555397 39764507 ~ 39765473 (-) True G141363
TU163223 other upstream 1015512 40224622 ~ 40241404 (-) False LOC110489653

Expression Profile