RNA id: TCONS_00027698


Basic Information

Item Value
RNA id TCONS_00027698
length 2049
RNA type mRNA
GC content 0.39
exon number 12
gene id XLOC_013857
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7878122 ~ 7886461 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCTGTGACATGGTGCTCCATgtttggtgtgaatgcagcattccACTGTGAACAGCCCAGCTGGCATCACCTCGTGTAGAgcatcatattttaaatatttgtattgctTCCAAATTAGAAACCACCTCATGTGCAttttataactctgaatctgATGTAACTGTGTCTTATTTTAAAGGCTGTAACTGTTCTGTTGAGGTCACATTTGAGCCACACTTACATACATTGAGGCAGGGGTGCAGTTCAACATGAGTGTGTAATGTAGAGCAATACCACTggtgttttattcagtttttatttttctaattccaCAGAAAGTGAGAGAGTGCTCTTCTGTGTGGATTGTAAATGGCATCAGTCGAGCAATTAGTAGCATAGAGCCATGGAGCATAATGGAGCACTGCATGCAAGACTTGGGACCAGGAGGACAGTGCAAAACAATAAACTTCATCTGTACCAGGACTGATGACATTAATATAAAAGAATATCAAAGaTCTGCACTGCCCTCTGGAGACCAATTTACTTCAGGGAAGaatctgAAAACAGCATGCATACATCATAGGAACAAGACTGCAAAGGATTCCGTGAAAAACAAGTTTGAAACCATGAAATCAAAAGACTTCAGAAGATTCACCGCTGATGTTTTTACTGTCAGCTCGAAGGCATACTTTGATGCAGATCTTCAGATGGATCAAAATGAAACTgAAATCCCCAAACTGCAGGACCTTCTCAAGAACACCAACAAGAGCATCAGGAGGGAACTGATCAGAGATTATGTCAATCAAGCAAAGGGAGTTTTGTTCTTCATCCAAAGTATCAAACTGGATACAAATGAAGGAATGGCAAAGCTTAAAGCCACAGTTTGTAAAGATTACTATGAGAGCCTTGAAAAAGCACTGAAGGAACTGAACAGTCGGTTTGATTCACATTACAAGATCATAGAGCAATGTTTCTCAAAAGGAGTGGAGAAATCAGTGGAACAGTGTGTCAGTACCACAAAGCCTGTGATTGCATCTGTGAAACCATCAGATAAAACCCTCCAGGCTTTGTGCAAGAACAAAGGATATTACTGGCCAAAAAGCAAGGATGCAGCTGTAGATCTAAACAAGTGCTTGGCTAAACACATCTACGACAACATTGATGAGGAGTTCAATTTGATATTTCCtgTTGATAGTAAAATCAAAACAGGGAAGTCGGTGCAAGAACAGATCGATAAGTTCAGTATCATTCAGAATGGCACAGTTTACCCTCCATCTTCCATGCTGTACCACATTCAGAACTTCATGAAAACAGAGGAAACCAAAGTGAAGACATTCCTCAAAAGAGATGTTGTccatagaaagaaaaaaatctactCATCGATCCAAACAACAATTCAGGATCAAATGACTGCTGGCTATAAAAAAGCTGCGGAGAAGAAAGGAGTAGGAGCCATGGGAAGGAGAGAGACCACAATAATAGAAACAATTGAATTGTTAAAAGACAGCATGTTCAAAGacacaaaaatacaatttctgaAAGAGTTCAAGTCTGTGACGAGCGATATATGCGAGAGACTTAAATCTGAGTTGAGCAGATCAGTGGAGCGCTCATTCTCACAAAGCAGCAAAGCTTCCCTGATGGATGTCTCGAAAGAGATTGAAACCCTGGAGACATTGTCTGAACACATCGCAGAAATCTGACTAATGTCAACATTTTAAAGCAACGGCAAGAGAGAACGCATTTCAGCATCTCCAGTTACTCGAGAATTAAACCTTTTGGTTAATATCTACTGTTGATTTAAAATGTGTCTGTCTAGTCACATAAGACttgatatatataaatgaaagaatacttttttttttgatgtgtagttttgtttttaatgagaTAGAGCTTAAACTTGCAAAAGTAGCATACTGAAATGAATTGTACTGTTTGTCACTTCATATGTACTGTAACATGCTTGTAGATTGTGTGACTGATTGTgataatgtgcaaatgttaaatctAGCTAATACACAATGAGAAGCAGAGAGGGTGATCATTGATTTTGTAGTAAACCATTT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-185 Orthologous to human NUGGC (nuclear GTPase, germinal center associated).

Ensembl:

ensembl_id ENSDART00000131917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027689 lncRNA upstream 98818 7775595 ~ 7779304 (+) True XLOC_013851
TCONS_00029871 lncRNA upstream 602768 7274583 ~ 7275354 (+) True XLOC_013834
TCONS_00027654 lncRNA upstream 610096 7242117 ~ 7268026 (+) True XLOC_013832
TCONS_00029870 lncRNA upstream 628762 7244699 ~ 7249360 (+) True XLOC_013833
TCONS_00027652 lncRNA upstream 698428 7173881 ~ 7179694 (+) False XLOC_013831
TCONS_00027702 lncRNA downstream 30329 7916790 ~ 7919014 (+) False XLOC_013858
TCONS_00027704 lncRNA downstream 32689 7919150 ~ 7923271 (+) False XLOC_013858
TCONS_00027705 lncRNA downstream 33674 7920135 ~ 7922594 (+) True XLOC_013858
TCONS_00027710 lncRNA downstream 55453 7941914 ~ 7949903 (+) True XLOC_013860
TCONS_00029695 lncRNA downstream 75060 7961521 ~ 7965420 (+) True XLOC_013862
TCONS_00027696 mRNA upstream 4286 7864767 ~ 7873836 (+) False XLOC_013856
TCONS_00027697 mRNA upstream 8917 7864782 ~ 7869205 (+) True XLOC_013856
TCONS_00027694 mRNA upstream 16842 7838644 ~ 7861280 (+) False XLOC_013855
TCONS_00027695 mRNA upstream 26132 7847920 ~ 7851990 (+) True XLOC_013855
TCONS_00027693 mRNA upstream 39890 7835025 ~ 7838232 (+) True XLOC_013854
TCONS_00027701 mRNA downstream 8625 7895086 ~ 7923910 (+) False XLOC_013858
TCONS_00027703 mRNA downstream 30329 7916790 ~ 7923570 (+) False XLOC_013858
TCONS_00027706 mRNA downstream 43243 7929704 ~ 7931923 (+) False XLOC_013859
TCONS_00027707 mRNA downstream 43543 7930004 ~ 7931923 (+) True XLOC_013859
TCONS_00027708 mRNA downstream 51660 7938121 ~ 7950716 (+) False XLOC_013860
TCONS_00027663 other upstream 393791 7484217 ~ 7484331 (+) True XLOC_013841
TCONS_00027658 other upstream 571559 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027653 other upstream 698457 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027648 other upstream 722423 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027637 other upstream 842802 7035206 ~ 7035320 (+) True XLOC_013824
TCONS_00027715 other downstream 412533 8298994 ~ 8299110 (+) True XLOC_013865
TCONS_00027731 other downstream 1205410 9091871 ~ 9096360 (+) False XLOC_013877
TCONS_00027739 other downstream 1263633 9150094 ~ 9169225 (+) False XLOC_013879
TCONS_00027757 other downstream 1543396 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027758 other downstream 1557311 9443772 ~ 9443878 (+) True XLOC_013889

Expression Profile

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