RNA id: XM_021562059.2


Basic Information

Item Value
RNA id XM_021562059.2
length 3443
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110489329
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39236527 ~ 39255790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaGGCGAAGAATGAGTATAAAAtaaaggggaggggaaggggtggAGAGCGCTAAATCGACAAGGGCAGATAAAGGAGATAGTGAAACGCTCGCCAAGGTACACATCTACGGAATCACCAGAGCCACTTCCGCCCACACGAAAGATGGCGGCTCCCTTGATGGAGAAATTGTCGGAATCTTTAGGTTCTCCAGAACCTGCGGTTCGCCTGATTCTGTCCGTTTTAGTCGGGTACCCCTGTGCCCTGCTGTACCGGCAATTCTTCTTCCACCAGCCACCCACTGTCATTCACTTATACCACGCCATCTCCGGACTGTCTCTGGCAGCTTTCAACTTTGGCACACAGCTCTATCACTCTGCATTATGCGTCCTTGTCCAGTTCCTGATGATGAGGCTTATGGGAAGGACGATAACAACCGTCCTGTCCAGCTTTATTTTTCAAATGgcATACCTGCTGTCAGGCTACTACTACACAGCTACAGAAGAATACGATATCAAATGGACCATGCCCCAATGTGTCCTTGCACTCAAACTTATCGGTTTGTCATTTGATTACTATGACGGTGGCCAGGAACCATCCAAGTTGAATGAGGAGCAGAAGAGGTCAGCCCTGGCCAATGTTCCCTCTCTGCTGGAGGTTATCGGCTTCTCCTACTTCTACGGAGGCTTTCTGGTGGGACCCCAGTTCACACTGCGCAGCTACCAGAGGCTAGTCAAAGGGGAGCTCACCGACTGCCCCGGACAGCCACCTAACAGTGTTATACCTGCTATGAAGCGGTTCTCCCTCGGCCTCCTCTGCCTGGTGATCTACGCAATATTTAGTCCGCACTACCCAGATAGCTATTACCTAACAGATGAGTACGACGCGCAGCCGTTCTGGTACCGCTGTGTCTTCATCCTCCTTTGGGCCAAAGTCATCCTGTACAAATATGTGAGCTGCTGGGTCATAGCGGAGGGCGTCTGTATACTCTCTGGGCTCGGCTATAATGGGCTGGGTCAGAATGGCGAGCACCAATGGGACGCCTGTGCAAATATGAAGGTGTGGACGTTTGAGACCACACCCCTTTTCACAGGCACCATCGCCTCCTTCaacataaacaccaatgcctggGTGGCCAGGCACGTGTTTAAGCGGTTGAAGTTCCTGGGCAATAAGCTCCTGTCTCAGGTGACCGCGCTCGCGTTCCTGGCCATCTGGCATGGCACGCACTCTGGATACCTCCTCTGCTTCTCCATGGAGTTCATCATCGTAAATGTGGAGAGACAGGCCCAAGCGCTGGTGAGGGACAGTCCCCTGCTGACCCGCCTGGCCAACAGTCCTCTCTACCCCCTCATCTACCTGGTCCAGCAGTTCATCCACTGGCTCTTCATGGGCTATCCTTTAGTGCCCTTCTGCCTCTTCACCTACGACAAGTGGCTCAGGGTGTATTCATCCATTTATTTCTGTGGCCACATATTCTTCTTCACATTGTATCTAGGCATCCCATATCTCCGCAAGGTTCTGGTACCTAGAAAAGAACGGAGCGAGAAAAAGGAGGACTAGAACTATGTTAGgtcTCTGGCTGAATCTCCACCCAGGATGTGACTGAAGGGAACTGTGACTTTTAACTAGGAGCAGATCAGAAAATATTTTAAAGCCTTTAATATTATTTCTgtgtacatgttttttttctatttattttagTGTTTTGGACAGGACGCACGTTTTTTGGGACCAGGGAGATGAGGGTACAGGAAATAACCTTTGTTCCACAATTGTGAGCCAATCACGCTGTGTTTTCTTGATTTTAGAGAACTTGAGAGACTGACGTCTTGTATACACAGAATATTGCACTCTCCACTCACGGGCTCTGGGTCTGTAGACTGCTCTGTTTTTAtgatctctcttcctgtttcaaCCCTCCCCTCAAGTCCATATAGACGGCGTATACAAaacatcctaatattgagttgcaccccccccccccccccccccccacagcctcaattcgtcgggcatggactctacaaggtgttgaaagctttccacagggatgctggcccatgttgactccagtgcttcccacagttgtgtcaagttgactggttgtcctttgggtggtggaccattcttgatacacacgcaAAACTGTTGCGCGTGGAAAAACCCAGCCACattgcagttcttcacacaagccggtgcgcctggcacctactaccataccccgttcaaaggcactttaataTTTAATATCTTGCCCATTCAATGTCTGAATGgcagacatacacaatccatgtctcaaggcttaaaaattgtTCTttgttctgtctcctcccctttatctacactgattttgaagtgaatttaacaagtgacataaataagggatctGAGCTTCACCTGATTCCCCTtgccagtctgtcatggaaagagcaggtattcttAATGTATTCTCTACGCGGTGTAGAAAACCTGCACAGACATGGCTATGGTTCAGGCACAACAGAAATGTATTTGGCACTTTCAGATTTTATTTTAACATGCATTTTGTTGagagaacaaaaaaaacaaggaTTGCTGCTCTGACTGGAATTATATATTTTTGAGGAGTGTTTTCATTGATCCGTTGGCCAACACTCACAAGAAGCACTGTAAAACACTGTACACACTTAACATGTGACTCAAGAATGGCCTTGTATTATCAACGAATGTTTTTACGTTTATTCTGGTTTCAATTCAGATTTTGTTTCCGATATTTCGTGATGAGACTGGATTTTATAGCTATTTTAAGAGGGTTTTATGATAGACCATTTTGTAGCTTTGGATAAGATTCCATGAAGGGATTTCAATGCTTTCCTCttccccatctccttctcattactttttcctcctccatccccctctcctcgtGGCTTTGTCTGCCATTCACCATCCTCCTATCACTCCATTGCCACCACACACCCTTCCTGGCTGTCTCTGAACAAACTGGAAAACAAACTTGCAACTAAAACAACAGGTAACCAAAACCACCACTTTTACATTGAGTGACATCACCATACCAATGTCAACAGCATCACCCGTGGTCTCCAGTGAGATCTAGCACCGTCCTCTATCTttcttaagaaaaaaaaaaaatctccctAACCACTGGCGCAAGGTCAGATCTAGAATGTTTGACCTGTCAGATACTCTGTTCCTACATCTGTGTTAAGAGGCAACTTCTACCACGATCCTTTTCCAATGCAGAGACACATTGGGAGAGCAGTGACTCACTGTAGCAACAACCCAGATTTTAATAATATTTATACTTGTGGTAATAATTAATTGATGTGAATTAATTGTTATTCCAGAGACTACTTTTTTGCCTTATTGCTACCAAATGTACAAAGGAAAAGAgaaatggaaaaaaaataattttaaataaACTTTTTGTAATGTTCATTAAAATGCTGGATTTTAAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161667 lncRNA upstream 4962 39231126 ~ 39231565 (+) True G140658
TU161668 lncRNA upstream 5220 39230619 ~ 39231307 (+) False G140658
TU161723 lncRNA upstream 55766 39177779 ~ 39180761 (+) True G140712
TU161718 lncRNA upstream 67788 39168466 ~ 39168739 (+) True G140707
TU161716 lncRNA upstream 69876 39166274 ~ 39166651 (+) True G140705
TU161770 lncRNA downstream 52882 39308669 ~ 39325188 (+) True G140753
TU161774 lncRNA downstream 70421 39326208 ~ 39326426 (+) True G140757
TU161775 lncRNA downstream 73538 39329325 ~ 39329577 (+) True G140758
TU161784 lncRNA downstream 85995 39341782 ~ 39347457 (+) True G140766
TU161790 lncRNA downstream 93738 39349525 ~ 39349785 (+) True G140771
XR_005039454.1 mRNA upstream 2112 39234360 ~ 39234415 (+) True LOC118944148
XM_036990520.1 mRNA upstream 41243 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA upstream 41243 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA upstream 41286 39170517 ~ 39195241 (+) True atp1a3
XM_021561973.2 mRNA upstream 191870 39000721 ~ 39044657 (+) False LOC110489280
XM_021562076.2 mRNA downstream 639 39256426 ~ 39298064 (+) False LOC110489358
XM_021562082.2 mRNA downstream 639 39256426 ~ 39298064 (+) False LOC110489358
XM_036947881.1 mRNA downstream 639 39256426 ~ 39298064 (+) True LOC110489358
XM_036947886.1 mRNA downstream 42622 39298409 ~ 39319882 (+) False LOC110489375
XM_036947889.1 mRNA downstream 42622 39298409 ~ 39319882 (+) False LOC110489375
TU160072 other upstream 1184783 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1292515 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1295813 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1314457 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2283508 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2712587 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2712587 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3254543 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4475085 43730872 ~ 43731218 (+) True G146054

Expression Profile