RNA id: XM_036947881.1


Basic Information

Item Value
RNA id XM_036947881.1
length 5559
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110489358
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39256426 ~ 39298064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAATAATGTTGCGCCAAAATGAGTAATATCACGCGTTGTCCCGGACACACTCATAGAGAATtcaataaacagagagaacaaCGCAAGTTGGCAGGGAAATAGAATtggaactgagagagagaggacgcagTGTGGGCGGGTTAAGAAACACGGAGAGGGAGGGGACGTCAGCGTTACATTCCCATCGTTTTTGCCCCTTCATGCGACGTCTGCCGAAAACAAGGACATCGATATTTTTGCGTCGGAGGAGGATAGCTGAGCTGCAGAAGCGCGGATGCTACGAGGGTAGCGTTGGGTACCACAACACCTCACACTCAGCACGATGGACAGAATGagttttctctccttcctcctcctttgCTTGACTTCGGTTGCCAATGGCAACAAAGCCAATAAGCACAAGCCATGGATCGAGACGGAGTACCAGGGTATCGTCATGGAGAATGACAACACCGTTCTTCTCAATCCACCACTGTTCGCCCTGGATAAAGATGCTCCACTGCACTATGCAGgtgAGATCTGTGGCTTCCGGGTGCACAATGGGCCCACGGGATCCAGTTCGGTACAGTTTGAGGCGGTGGTTCTGGACCGCTCGACAGGGGAGGGCCTGGTCCGCTCTAAAGAGCCCCTGGACTGTGAGAGCCAGCGGGAGCACAGCTTCACCATCCAGGCCTATGACTGTGGAGAGGGCCCCGATGGAGTCAACAGCAAGAAGTCCCACAAggcTACGGTGCATGTACGTGTGAATGACGTAAACGAGTTCTCCCCAGTGTTCGTGGAGCGTCGCTATGAGGCCTCCGTCCCAGAAGGCCGTCTGTTCGACCGCATCGTGCGCGTCGAGGCCCTCGACGCAGACTGCTCCCCGCAGTACAGCCAGATCTGCTTCTACGACATCATCACCCCCAGCGTTCCCTTTGTCATCGATAACGATGGTAACATTAAGAACACCGAGCCATTGGATTCGAAGCGCCAGCGTGTCCACACCTTCTGGGTGACCGCGTTCGACTGTGGCAAGAACCGCGCTCAGGCCGACGCCCAGGTCGTCGTCACGGTCAAACCGTCCTGCAAACCCGGCTGGATCGGTTGGTCGAAGCGGGTGGAGTATACCCCCGGGTCAGGCAGCATTCCCCTGTTCCCCAGTTTGCACCTGGAGACCTGCGAAGAGACTGTGTGGAACATCCAGGCCACCGTAGAGCTGCAGACTGGCCATATTGGGAAAGGCTGTGACAGGGACAGCTACTCAGACCGATCAGTGCGCAGACTCTGTGGTGCTGTGAGAGGTGAAGTGGACTTACTCCCGCCCCCGTCCCCAGCAGCCAATTGGACCTCAGCCTTGCCCACCCTCCCTTCTTCTGATTCGTCCCTGGTGTTCTCCTTTAATGGCTCCACCCATGTTGCTGTGGTACCCGACTCTATTGCCGCGGCCGTATCCGGAGACCATTTCACCCTCCAGCTGTGGATGCGAAGGGGTGGGATCAACACCCAGCCTCCGACTAATCAGGCCAGAGGAAACCGCAGGGAGGAGGAGACTATCGTCTGCAGTACCGTCAAGAATGGTCAGTCAAATGaCGACTCCTTCTCCCACTACTCTCTCTCCGTTCATGGCTGccgtctctctcttttctactgGCCCGACGTCTCCGCTGCGCGGCCCGTGAAATTCCTCTGGAAACTGGAGCAGGTGTGTGACAGCGAGTGGCATCACCTGTCCCTCAGTGTCCAGTTCCCCTCTGTGACACTGTATGTGGATGGAGTCACCTTCGACCCCGCCCTCATCCATGACAACGGAGTCATACCCAACCCTGCCCCACGACAGCGACTGGTCATTGGCGCCTGCTGGGAGACAGAAGATAAACAGAAGGACATCCTTAACAACACCATCCCTGAAGGGAAAGACACAGGGAAGTATGTGGGTGGTTACCGTGGCCTGTTGTCAGGGGTGACGGTGCGTCCAGGGAGTGTGGAGCCCCACAGTGTGGTGGAGTGTCTGTACGCCTGCAGAGAGGGGCTGGACTTTGGGGACCTGGAGACCTTGGGCTCAGGCATGAAGGTGCATGTGAACCCAAGTCAGTCTGCGCTGGTTCTGGAGGGTGATGATATTGAGAGCTTCAACAGGGCCGTGCAACAGGTGACCTACAGGAACTCTCTCCGCTTTGCCACCCCTGGAGTCAGGCCACTCAAACTGACCACCTCTCTCAGgTGTTTCAATGAGGAGAGTTGTCTTACGCTCAGGCAGTTGGAGGGCTACCTGGTGGTCCTTCAGCCTGACGCCCCTCAGATCTCCCTGTCTGGGGTCGGCCCCCACCTGGCCCGCCCCGCGCCTGAATTCGAGGGCCCCCGTGGTGTACCCCTCTTCCCAGAGCTGAGGATTGTGTGCTCCCTGTCTCATGCTGTTAACACAGCCGCTCAGGgcatggagggaggagCTCTGATGTCAGACGCCGTGGCCCACACTCTGGACGGCTGTGAGGTCCAGCCCCTGGGGGAGGAGCTAAACCCAGAGAGGGAGGAGCTCCTGGTGGACATGGATGCCCTGAGAGAGAGGGGTCTGGAGATAATCAACACCACTGCTTACATCGCCATCACAGgagCTGAGTCCATCTCCGTGTATGAGGATGTCCTTCGGTCCGTCCGTTACCGGCTGGCTAAAGGCTCGGCCCGCTTTGAGAGGCGGTTCCGTCTGTCCTGCTCCGAGATGAATGGCAGATACACCAGCAACGAGCTCACACTGGAGGTGAACTTCCTGCACTCCTTGGACAGTCTGTACCACCCGTCTCACCTCCTGGCCTCCCAGCAGCAGTTCCTTCACCCGTCTCATCACTCTGGGGAGCTGAGCGGACACACCCTGCCTAACCCCCACCGCAACTCAGTGGTGCCAGGAGCGGCCACAGTCATCATTATGGTGTGCGTGGGCTTCCTGGTTGTCATGGTGATCATGGGAGTGTTTCGAATCCGCTCCATCCACCGCCGTGGCGAGGGCGCCAGGGGAGGGTCTAAGGAGGACAGCGGCCAATGGGATGACTCTGCTCTCACCATCATCGTCAACCCCATGGAGtcctATGAGTCTCGTATGGGTATATCAGCTGACACTGaaggtgagggggaggaggacgaggaagtGGTGGAGTCGCCTGACAACGACGACCAGCGAATCATCATCAAGAAAGAGGGCAGAGACGGCAACCCCCGTCGCTACTAAGCcaatcgtctctctctctctggacgcACCCATTTCTATGGAAACCACAAAACGGCTCGCCACACACACTCTTCTCAACGCGTTTAAATATTGAAGACTGCTGACACCTCTAGTCTATGGAATGTAAAcgtacaacaacaaaacactgtaTTACCGCAACATCACAGCACCATTAATGATCTATAGCCAATAACAGTGCATTGAATGTTTCACCACGTAAATGTTCTACggcacaatatatacagtatactctaACCGCCTGACCAAAACAACCAACAACAATTGTTTGTGGTGCACTAATTCCTAACTCACAGGGAATTGACATTGTCCTGGAAGTCTGTGACACAGGCCGGACTGAGGCTACATAACTTAGGTGTAAAGTTAAGACTGTATATGTTTTATTATCTCTATATCACACTCCAGACAGCTTTTCCCACCACACAAAATGAATATTGAAGCAATCGATTCACACAAAGCCTCGTGTCGGCCACTCACACATAGACACAAGCCCTGATCCTGACGCTATCCCACACACCTCTAGATTTAATCTAGTCGTCTTTTTGCtgcacaatctctctctctctctctctctctctctctctctctcgctctttctctctctatacattCCTCAACTTCCAAAAACACGAACCCTCTCCCCACCAgatctgactccagatcagatcCACATTTATAGTAACCCTAATATACAAAAACATACAATTATAGGGTTCTAACAGACTTTTACATACTATGTACGATGTGCTAAATTAGATAAAATAAATTGTCCATGCAAAAGTGTACATTTTCAGAACTTTCCTTTTGTCAGGGTAGACTTTTAATTGTTAAATCGTATTGTTTGGTAGAACCCTTTCATTGTATGTTTTTGCAAGTCAACCAAACAGGCTGCCGATACGGGCATAGAGTAACCTCTGACCCTTACCACAACCCCAGTGACTCGACTGAGCGACCCCCAGCCcattgcactttcaccacccacCGCTCTCGTGACAACCTCACTACAacaacgacacacacaccacaacacccgCTGTATCCAGAATGTCAGCTCAGCTCGGGCAGTTTTGATTGTATTACATTTTCTGTACATaaaattattgttattattattgcagTCAACGCTTGCTCTGTCTGTACTCTTAAAGAGGGAGCTGCATATACATATTATTTATTACCAATTACATTGTTTTATCATTTGACCAGCTGTTGTATATTTTTAAAGGTTACACCATCAGAATACagagtaataataatagtagtagtagtaataaggATGATGATTCCTGGCTTGATGAGTGTATTCATTCGTGTGTTGCATTGTTGTAATTTAAAATCTTGTTCATATCTGAATTACAGTAAATGGAGGGGACATTGTGATAAATAGCTACTCtgtctcccctctcgctctcactcCTTCCTTCTTTCACACCTCCTTTAAAATATTCTCAAATCGTTCTCTcttccttatctcctctctcttccccatcgtCGTTTTCTTTTCATGCCAGTCCCCATCATCTCTTTGGTCTATTGAATGtaacctcctccctccatcatcctctctcacATCCTCCCTTTGTGTttattgctgtctgtctgtgtttcaatGTGCAGTGATAAACCTGTCAGTAAATAAAGCCTGTTGTTTTTCAGTGTAATATTAAAAATGGAATACAAATTTAATTAATTACTTATATTATTACTATGGTTACTATTGGGACATTAACTGTAATTATTGATACAATGATAACATGGATTATGAAGACTATTGTTATTGATAACTGTCTGAAAACATTTCAAAGTTCATAATAAAACACTGATGACGTCTAAATGctgcctgtttttttttaaagtaaataatcaatTTGAAAATATTTCACTATCACCATCTTCTGAGCACTTTTTGGATGGTGTTaaggtttttttttaaatcaataatgactaattatgtatacatttcaatcaggactgactaatcagaatactattatgttactgtatagatgtatgaattttattttaatcctagtactgaatataatgtgtgtaattataaTCAAGACTTAGAACAAAgactgttccttggtagaaacgaATGAACTTAtcatcagactggctagaatgcttatctacacagggagACCTTGGCCTGGTCCTAAAGTATCTAAACCGGTGGGAACGATGtaggaaggcttgtgaactatactgccattgtatcAGAATGGAGGAGGGACGGGACAGTTTAAAACCTAttacgtcattttcagtttataacctgttgtaaattgtatcatgttcagtactctcgagaataaacgctattgCTTGATTATGA

Function

GO: NA

KEGG:

id description
K22661 CLSTN3; calsyntenin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161667 lncRNA upstream 24861 39231126 ~ 39231565 (+) True G140658
TU161668 lncRNA upstream 25119 39230619 ~ 39231307 (+) False G140658
TU161723 lncRNA upstream 75665 39177779 ~ 39180761 (+) True G140712
TU161718 lncRNA upstream 87687 39168466 ~ 39168739 (+) True G140707
TU161716 lncRNA upstream 89775 39166274 ~ 39166651 (+) True G140705
TU161770 lncRNA downstream 10605 39308669 ~ 39325188 (+) True G140753
TU161774 lncRNA downstream 28144 39326208 ~ 39326426 (+) True G140757
TU161775 lncRNA downstream 31261 39329325 ~ 39329577 (+) True G140758
TU161784 lncRNA downstream 43718 39341782 ~ 39347457 (+) True G140766
TU161790 lncRNA downstream 51461 39349525 ~ 39349785 (+) True G140771
XM_021562066.2 mRNA upstream 636 39247344 ~ 39255790 (+) True LOC110489329
XM_021562059.2 mRNA upstream 639 39236527 ~ 39255787 (+) False LOC110489329
XM_021562060.2 mRNA upstream 639 39236527 ~ 39255787 (+) False LOC110489329
XM_036947879.1 mRNA upstream 639 39236527 ~ 39255787 (+) False LOC110489329
XR_005039454.1 mRNA upstream 22011 39234360 ~ 39234415 (+) True LOC118944148
XM_036947886.1 mRNA downstream 345 39298409 ~ 39319882 (+) False LOC110489375
XM_036947889.1 mRNA downstream 345 39298409 ~ 39319882 (+) False LOC110489375
XM_036947890.1 mRNA downstream 345 39298409 ~ 39319882 (+) False LOC110489375
XM_036947895.1 mRNA downstream 345 39298409 ~ 39319882 (+) False LOC110489375
XM_036947897.1 mRNA downstream 345 39298409 ~ 39319882 (+) False LOC110489375
TU160072 other upstream 1204682 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1312414 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1315712 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1334356 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2241231 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2670310 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2670310 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3212266 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4432808 43730872 ~ 43731218 (+) True G146054

Expression Profile