RNA id: XM_036947890.1


Basic Information

Item Value
RNA id XM_036947890.1
length 3879
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110489375
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39298409 ~ 39319882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCAAGGTCATTGTTACATTGTTTCACCAAATGGAGCCAGAGATTGCAATTTCATCGAACATTTTTAGAATGTTACAATATTCGTAGGCATAAATGGCAACATCGATTTGCAGCGTTTACACACGCATAAACTCGTTCTGCGCACATTCCCTATTGTCTGTCATTCAACGTCTACGTCGATGCTGTTTGAGAATACGACTTGCAGGATTAACTGTGCGTCTGTGTAGGTTTTTTGTGGGTCATGGGGGAAAGAGCAGGACGTAAATAAAGAGACACGCGTTAATAAACACGGGGCCCTAATCGTACAGCATCTGTTTGGGTCAGCAGAAAGAAATCCTTAAATCTAAACCCTAGTATAGCTACTGGACCACCTGTGGACTGGGTACAGTGTTGTCTCCCCTTATTTTAGCTCTAAGGTGGTCTGATTGGATACACCGCTGCCCGGTGTTGCCATGGCGATGCAGGAGCTGGTGGAGGGGGAGTGCGGGGGAGCCAATCCCCTCATGAAGTTGACGGGTCACATGACCCAGGAGGGAGGTGCTTGGAGGCACAGGTCAACGCCAACTATTCCCCCTACACCCATTGAAATAGCAACAGAAGAAGAGTTGGTGAATGAGTTCATGCAGCAGGCGCCTCCACGGCCCCCTCACAGCTTTGACATGGGCCAGTTACTGGAGGAAATGCAGCAGATTGATCAGCAGAGCTACAGACAGGCTCCacagagagCTCCGGGTGTGGCCGCGTTGGCCCTGTCTGGTGATTGGACGTCTGAGTTTCTGTCGGGAGCGGATGCCGCCACCGCCTCTTCAGGGCAGGCGGGACTTGGAGACCCGGCTGACGCTGATTGGACCAGAGAGTTCATCACCGATGGCACAGatcccGGGCGTTGGGCAGAGGAGTATCTGGAGCAGTCAGAGGAGAAGCTATGGCTCGGAGacctgggagagagggagcaagaatGGACGAAAGAGTACCTACCAGGAGACGAACTGAAGCAAACAGCCAATGAGCTGGTCGCAAAGGTCAATGACCCCAAGTTACAGaacactgagTTCCTGCGGTTCATTAGGCAGATTGGCGAGGGCAGTGTCACAGTGGAGGACAGAGCAGGCAAACAGCACACAGATAGAGCTCAGGCCAAGGAGGCTCAGAACTGGGCCTCCAACCTCAACCAGGTCTCAGTGGAGTCAGCGGAATCATGGGTAGATGAGTTTGCCACAGCAGGTCCAGATTTCCAGCAAGCTAAAGCTGCTGTGGAGAGCGATGTGGACTTCTGGGAGAAGCTGCAGCAGGAGTGGGAGGAGATGGCCAAGAGAGATGCAGAAAGTCACCCCTGGCTCTCTGATTTTGACCAGATGCTCAGCAGCTCCTACGACAAGGGGTACCAGTTTGAGGAGGACAACCCGTACCTGTCCCACCAGGACCCCCTTGCTgagggggtgaggaggatggaggcaGGGGACATCCCTGGGGCCGTGCGTCTATTTGAGAGTGCCGTACAGAGAGAACCAGACAACCAGCTGGCATGGCAATATCTGGGAACCTGTCAGGCAGAGAATGAACAAGAGTTTGCAGCCATCAGTGCCCTCCGCAGATGCATAGAGTTGAAGAAGGACAACCTGACCGCTCTGATGGCTCTGGCTGTCAGTTTCACCAACGAATCGCTGCACAGGCAGGCCTGTGAGACCCTTCGCGATTGGCTGAGGCACAACCCCGCATACCGGCCAGTCCTGGAGCAGAGTGAACGGGAgcgagagaaggacagagggaccagagagagggagagatttggCTCACTGCTGCCCGAATCTTTGTTTACCGAGGTGCAGTCCCTGTTCCTCAGTGCGGCGAACTCTGAACCCGCCTGCGTCGACCCCCAGCTACAGTGTGGCCTGGGAGTCCTCTTCAATCTGAGCGGGGAGTATGACAAGGCCGTGGACTGTTTCACCGCAGCCCTCTCCGTCACACCACAGgaCTATCTGCTGTGGAACAAACTGGGCGCCACGCTGGCCAATGGAAGCCGCTCAGAGGAGGCTGTTGCCGCCTATAGGAGGGCGCTTGAACTGCAGCCAGGCTTCATCCGCAGTCGGTACAACCTGGGAATCAGCTGTGTCAACCTAGGAGCCCACAGAGAGGCCGTGGAGCACTTCCTGGAAGCCCTGTCCCTGCAGCGCCAGGCGTCGGGGGAGGGCGAGAAGGTCAGTGCCAGCCGGGGCCCGGGGAGCACCGCAGCCACCATGATGTCCGACAACATCTGGTCCACCCTGCGCATGGCCTTAAGCATGATGGGAGAGAGCTCGCTAGATGTGGCGGCCGACCGGCGAGACCTCGACACGCTGCTCTCCTACTTCTGTCAGGCGGGGGGGGAATGAaggtgtgggagggagaggggcaggaggagagttgatagtgtgtgtgtgcgcgcgcacttAGGAGAGGAAGGTGtctgggagaggtagagagagaaaaggaagagagagagagaggtcctgtCCACAAACATCCCATTAACCCTATAGGCACTTCATATAAACCTGAAATGATTGGataagtataaacaacatggaaGTAGCTCCTTTCGTAACATTTCTGCCATCTTATAactaccagggttggggtcagtttacttcctgaattgaaagggaactgactccaaccctgatacctatccaatcctttcaggaagagagggatgatgaACTGTGACAAGGGGAGAGTAGGCcgaaagggaggagaggtgagaaggacatTTGATGTGTCTTTCAGTAACCGAGGGAAATGCACAGTGTACACCAGGTGTATTGAATACATACTATTTCTTCCCCTGATCACTCTGACATCACCTGGTTGCCAGTTGGTTCCTACTTTTTTCATTATCATGTTTGGCacaaagcagaaacagactggcacccagactAGTTCACAGATGTCTGGTTTGTTCCCCTCTGTCCTCAGCAACTGGCGCAGGGATGTTCTTGTTGTGCCCCTCATAATCAGAGGCATCGTCATGCCCGTTGAAACTGAGGAGCCACTTGACTCCCTTAGTTTCATACAGCCCTATGATCCATTGGATACTAGTGAAAAGTTTGCACCTTAGGTTTTCCAGAGGGAATAAAACGGACATGGTAGAGCAAAATATCAAGTTGAGATGAATGTTCCTGGAATGTATAGAGAAGATCATGTTTATTTGGAGGACCTTTGTTTTTCGTGTTTTATTCCCCCTTGAAAATAAGAAGTTCAAATGTTGTAAAGCTGGCTTACTGGTCCCGAAATCAATTGCTGAAGGTTAAAAAAGAGATCATTACAGTAATATAGATATTTGGCTTTGGAGCAGGGGTGCTGAACTCCGGTCCTTGAGGGCCACAGTGTCTTTAGTCCCCCCCCCATATTTTATAGAGATCGGAGAATGAATTATACTCCTACTCAGTCCAATCAATGACATATCAATCAATGAAGTACTTGAGAGAAATGAAAGACTGCTGACATGAGTTGTACACACCAGAGTCGTATTCACTAGTAGGAACCCAATGGAAGCgaacggggagggacctacctacctgaatttgtccgaCAAGAAACGCTTGTTTTCATTTTCTGTTGTTACAGTGTGCAATAATGAATGACTCAGCTTTGGACAGAGGATGACATCAGTGTAAAGGGGATGGTATACTGAAAGAGGTGTCTTTGGACTTCTTCCCTCCCTCAACCCTTATTTCTTCAAACAAATGCCCTTGTTGTAAAATAATTAGCTTAATTGTAAAATAATGCTTTTTTGCCATATTGTCTGTACTATAATTATTGTACTGTTTTCCAAATAGTTAACCATACTGTAATGATTATTAATGTGATATTCAGCAATAAAGCTCTGACTCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161667 lncRNA upstream 66844 39231126 ~ 39231565 (+) True G140658
TU161668 lncRNA upstream 67102 39230619 ~ 39231307 (+) False G140658
TU161723 lncRNA upstream 117648 39177779 ~ 39180761 (+) True G140712
TU161718 lncRNA upstream 129670 39168466 ~ 39168739 (+) True G140707
TU161716 lncRNA upstream 131758 39166274 ~ 39166651 (+) True G140705
TU161774 lncRNA downstream 6326 39326208 ~ 39326426 (+) True G140757
TU161775 lncRNA downstream 9443 39329325 ~ 39329577 (+) True G140758
TU161784 lncRNA downstream 21900 39341782 ~ 39347457 (+) True G140766
TU161790 lncRNA downstream 29643 39349525 ~ 39349785 (+) True G140771
TU161791 lncRNA downstream 30254 39350136 ~ 39350359 (+) True G140772
XM_021562076.2 mRNA upstream 345 39256426 ~ 39298064 (+) False LOC110489358
XM_021562082.2 mRNA upstream 345 39256426 ~ 39298064 (+) False LOC110489358
XM_036947881.1 mRNA upstream 345 39256426 ~ 39298064 (+) True LOC110489358
XM_021562066.2 mRNA upstream 42619 39247344 ~ 39255790 (+) True LOC110489329
XM_036947879.1 mRNA upstream 42622 39236527 ~ 39255787 (+) False LOC110489329
XM_036947907.1 mRNA downstream 8578 39328460 ~ 39337579 (+) False LOC110489418
XM_036947908.1 mRNA downstream 8932 39328814 ~ 39337579 (+) True LOC110489418
XM_021562161.2 mRNA downstream 46526 39366408 ~ 39378286 (+) False LOC110489446
XM_021562156.2 mRNA downstream 46527 39366409 ~ 39378288 (+) False LOC110489446
XM_021562164.2 mRNA downstream 46529 39366411 ~ 39377858 (+) True LOC110489446
TU160072 other upstream 1246665 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1354397 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1357695 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1376339 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2219413 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2648492 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2648492 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3190448 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4410990 43730872 ~ 43731218 (+) True G146054

Expression Profile