RNA id: XM_036947908.1


Basic Information

Item Value
RNA id XM_036947908.1
length 1640
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110489418
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39328460 ~ 39337579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCAATCTATCCACAATAATTGACATTAGCCATCTATCGTCATGGGATCCAGCGAGAGCAAGGTTGCTGTGGCCTCAACGCCCAAACATGACCCCAGCCATCGGATCAAACACGACCGTCTCTCTCAGCTTGTCGACCCACGGTCTCCATCTGTAGCCATTGACCGCACACCCATTCAGGTGGGTGGAACCGTCTCCTGTGTCCCAGTTGTGGAGAGTGTATGCTCCATTCTAGCCAGCGACCCTCGGTCACCCTCAGTCGGTGTCACCCGCACCCCAATGAAGGACTCCATGAGCGtgACAGTTAGCTCCTTCGCCCACCGCCTCAGTATGCTCCTCCACAGTGACTCTGTAGAAAGAGTTGCCCCTGTGCCCTTCAAGTTTCCCAACTTCAATGTGGAGGAAGAGGCCGTGGTAGAGGGAGAGTTAGGCTCCAGTGagccccttctctcccctcagccATCACAGGTCTCAGGTGACATGATTCAGCCCTCTCCCCAGAGCGTGGCTAGTCATATGCTTCTCATCCAGAGTCCCTTCGTTCTCGTGGGGGAAGCCCAGATAGACGTCGAAGCCGATTTCACTCTGGAGGAAGCCGAAGAGGCCAAGGAGTCTTCACTACACAAGCGCCTGAGTATGAGCTTGATCACCTGCCACGATGGTGTCGCCCCATCGCCGACCTTCGCCGAGGTGCACTACGACAGCCCTGCATCTCCTCTCCCTGAAAATGCTGCTGCTGAACTCCACAAGGAGGAACCTGACCATGCGAAAGCCCTTCCCTCGGTCACCTCTGACCCCGCACAACCTCTGACTCCCATGGCTGAACCATCCATCCCCACCATTACAGAGGTAACTGAAGTCACGGTTGCTACAGAGATTCTTAAAGTGGAGGTCCCAACACCAGTGGAGGAGCCAATGATGCCTGTAACGGTGTCGCCTGTTGTACCATCCACCGCAACCACTGGCCCCAGAGTGAGCCAGCAGCAGCCCCAAGCCACTGGGATCCGCTGCCCCACCTTCGACAGCAAGAGCCCCAGTCAAGTGGTGTTCAAGCCCCAGTGGCTAGGGAAGGGCTTCGGGGCCACAGGGGTGAGGGCCAGAGGTAGAGGAGGCAAGGGGGGCTTGTCCTCTTCACCACTCTCCGTCCAGGTTGGAAACAAGAATGCAGCCAATGAGAACAAGGGGCAGTCGGTCAAACAGAAGCAGAGAGACAAGGCACTAGTGGCTGAAGGCCGCTCCCCTCTGCAGATGCTCAAGGAGACCAACTCCCCCCGGGAGCAAGCAACACAGATGAAGCTGAAGATAtccaccccagacagacagaggctgggTCAGTTGGACCGGAGAGTCCTGACTGTGTCCATGGACAAGGAGAACCGATAGATGACTGTTGCAGAGGAACATGCACAAACACTAACTGGCCAGTGTATAGAATCTTGCCATTTTTCTATCTGTCTAATAACGAGCTTTTTTAAAGTGTACAGTCTCTTTTTAACTGACTTTTTCAAACTGCTAACAAATTATAATGTGTACATTGTTTTTGGAAGTGCCATCGATATGATTTGTCTTTATTTCAAGTGTCTGTATCATTGTATTTGCTATCCTGTCCTTTTATGTAAATAAATTTGCTTTAAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161774 lncRNA upstream 2388 39326208 ~ 39326426 (+) True G140757
TU161770 lncRNA upstream 3626 39308669 ~ 39325188 (+) True G140753
TU161667 lncRNA upstream 97249 39231126 ~ 39231565 (+) True G140658
TU161668 lncRNA upstream 97507 39230619 ~ 39231307 (+) False G140658
TU161723 lncRNA upstream 148053 39177779 ~ 39180761 (+) True G140712
TU161784 lncRNA downstream 4203 39341782 ~ 39347457 (+) True G140766
TU161790 lncRNA downstream 11946 39349525 ~ 39349785 (+) True G140771
TU161791 lncRNA downstream 12557 39350136 ~ 39350359 (+) True G140772
TU161816 lncRNA downstream 65755 39403334 ~ 39403625 (+) True G140792
TU161760 lncRNA downstream 72654 39410233 ~ 39412741 (+) False LOC110501538
XM_036947890.1 mRNA upstream 8932 39298409 ~ 39319882 (+) False LOC110489375
XM_021562161.2 mRNA downstream 28829 39366408 ~ 39378286 (+) False LOC110489446
XM_021562156.2 mRNA downstream 28830 39366409 ~ 39378288 (+) False LOC110489446
XM_021562164.2 mRNA downstream 28832 39366411 ~ 39377858 (+) True LOC110489446
XM_021562186.2 mRNA downstream 42013 39379592 ~ 39385031 (+) False LOC110489493
XM_021562191.2 mRNA downstream 42015 39379594 ~ 39385031 (+) False LOC110489493
TU160072 other upstream 1277070 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1384802 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1388100 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1406744 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2201716 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2630795 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2630795 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3172751 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4393293 43730872 ~ 43731218 (+) True G146054

Expression Profile