RNA id: XM_021562161.2


Basic Information

Item Value
RNA id XM_021562161.2
length 3668
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110489446
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39366408 ~ 39378288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTAAACATGACCGTAATTGCTGAAAAGGTTACGTTTGATATAAAGCAGATGTTGTCTATTTTGCCTGTGCGTCTTATTGTATGTCTTTGTTAGAAGTTAATTAACGTTTTAATATAGATTTGATTAATTGGCTATCTGAATTCATATTTAATTCATGTTTCTCTCTCAAATGCAACATCGCATAATTGTGCGGTAGTTTATACTCTATATATTACGATTACCACGATACCGGGTGCGTGCTATACGCGTTCGGCCTTGAGTCCACACAAACAGGGGGGCATCAAGCCATTCAttgggaggaagacagagagaggggaagagcaaTACAAACAGACAATATTCAAAGCTGGGGAATCAAAAGCTTGGGGTCCAAACTCAGGAACAAGTGTCCGACTGGAAGGCAGAATTAGTTAGTTTGAGATGGCGGAGGTAAGCGAGGTTTTGATGTCGGTTCTGTCCACAATTCGGGTTCCGAGGCCCGGGGACCGTGTCCACAAAGACGAATGCGCCTTGTCATTTTCTTCTCCGgagagtgaaggaggcttATATGTGTGCATGAACAGTTTCCTTGGGTTCGGCAGCCAGTATGTGGATAGACACCACACCAGGAGCGGACAGCGGGCTTACCTGCACATCTCCCGGACCCGCAAAGCTCCGGAAGATGAGGAGAACTCTGGATCCGGTGACCCACCCAAGAAGAAGCCAACCCGATTAGCCATAGgtatCGAGGGAGGGTTCAACGTGGAGCAGGAGCAGTATGAGGAGGAAGTAAAAGTTGTCCTCTTCCCCGATAGACAGGAAGTTACATCCGATGACCTCGCCACCATGCCGGACCTTGTGAGAGAGCGGGTATCTCTAGCCATGGCAGGGCTGATGTCTGCAGACTCAGTGTCTCATGCCCTGCAGGTGCAGCAGTGGGACGGCGAGGTGCGGGCGGAGTCCCGGCACGCCGTCAAACTCAAGCAGCTCGACAACGGCACCAAGATCCCTCCCAGTGGTTGGCGGTGTGAGGTGTGTGACCTGCAGGAGAACCTGTGGATGAACCTGTCGGACGGAAGGGTGTTCTGCGGTCGCAGGTATTTTGACGGCTCCGGGGGGAACAACCATGCCCTCCTGCACTTCCAGCAGACGGGACACCCTCTAGCCGTCAAACTGGGCACCATCACCCCCGACGGAGCAGATGTGTACTCCTATGACGAGGATGATATGGTACTGGATCCAAAGCTCCCAGAACACCTGTCCCACTTTGGCATCGACATGATGACCATGGAAAAGACGGAGCATACGATGACAGAGCTGGAGATAGCGGTGAACCAGCGTGTGGGGGAGTGGGAGGTGATCCAGGAGTCAGGGGCCACCCTCCGGCCTCTGTCAGGCCCTGGCCTCACCGGCATGAAGAACCTGGGCAACAGCTGCTACCTCAACTCGGTCATGCAAGTCCTCTTCACCGTGCCTGACTTCCAGAGCAAGTACGTCTCCAACATTGACAAGATCTTCGATGAAGCTCCAAGCGACCCCACCCAGGACTTCAAAACCCAAGTAGCAAAGCTGGGCTATGGTCTGTTGTCGGGCGAGTATTCCAAACCAGCACCTGACCCCGGAGAGGGCTCTGAACCCAGCTCTGAACCCAGAGGTGACCAGGTTGGCATAGCGGCACGCATGTTCAAAGCACTTGTTGGGCGGGGCCACCCAGAGTTCTCCACCAATCGGCAACAAGACGCCCAGGAGTTCTTATTACACTTCATTAATATGGTGGAGAGAAACTGTCGTTCGGGGGTGAACCCGTCTGAAGCCTTCCGTTtcctagtagaggagaggatcgTGTGTCAGCAATCACAGAAAGCAAAGTACACGCAGAGGGTGGACTACATCCTCCAGCTACCTGTGCCCATGGACCAGGCCACCAACACCGAGGAGCTGCAGGAGGCTGAGCGTCGGCGCGAGGAGGCAGACTCGTCGGGAGCCCCTCCCCCCGCGCCGGTGCGCGCCTGTATCCCGTTCACAGCGTGCATGGCGGCGCTCAGCGAACCGGAGACTCTCACAGACTTCTGGAGCTCCGCCGCGCAGGCCAAGACCACCGCCACCAAGACCACCCGCTTTGCCTCTTTCCCTGACCACATGGTTATCCAGGTTAAGAAGTTCACTTTTGGACAGGACTGGGTCCCCAAGAAACTGGACGTGAGCATCGACGTTCCCGACACGCTGGACCTGACTGCGCTTCGTGGGACCGGCCAGCAGCCGGGGGAGGAGCTTCTGCCAGAGGTGGCCCCACCCCCTCTCATGACCCCTGACGTGGAGGTCAAAGGTATCCTGGGTTCCCACGGCAACGAGGAGGACGACTCGCTCTACTCCCCACTactgtccccagtCCTGGACGACTCCACCGTGTCCCAGTTGTGTGAGATGGGATTCCCACTGGAGGCCTGCAGGAAGGCTGTGTACTATACTGGGAATACTGGAATCGACGCAGCCATGAACTGGGTCATGGGCCACATGGACGACCCAGATTTCTCCGCTCCCATGGTGTTGCCAGGCACCAGCTCGGCTCCCGGAACCACGCCCACAGAGAGCGTTTCTGAGGAGCACCTAGCAACCATCGTCTCCATGGGCTTCAGCCGAGACCAGGCCACGCGAGCACTGAGGGCCACGAGTAACGTCCTAGAGCGCGCCGTGGACTGGATCTTCTCCCACCTGGATGATCTAGAGTCCATGGAAGTTTCGGAGGGGGGCCGCTCGGCCGCCGAGAGTGAGGGGTCCAGGGAGCCCCCTCCTGGGCCTAAAGTCCGAGACGGACCTGGCAaGTATGAGCTGTTTGCCTTCATCAGTCACATGGGCACGAGCACTATGTGCGGCCACTACGTCTGCCACATCAAGAAGGACCAACAGTGGGTTATCTTTAACGATCAGAAAGTGTGTGCCTCAGAGAAGCCGCCCAAGGACCTGGGTTACCTCTACTTCTACCGGAGAGTCACCGAGTGAACGGAGGGGGGCAGAGTTTCActtagggaggggaagagggtcgCTAACatgtacacactcacactgagCTACTAAGAATGCTCTGACACAAGCTTCTGAACTGACAAATGTAGGGTTTAAATAAATATACTTTTCCTACAGCTATGTACGCAGACACAGGCAGGTGGAATGGATGGGGTGTTTAAAGGAGAAGTGTCTTTTTTccatttttatttcacttttacaATAAACACTGTAGTGTTGGTGGAAGGCTGCTGGTGTGTTCACCCCTTCTAAGTCTATACTCATCTTGCAACTGACACCAGTCAACTCATAATAGATACTGGTATCATTATACAGTGTCTAATGCAACAATGTTCCCACCCCCCTCTTCCCTGAACAACATGCCACTCATCTCTTATTGACTAGCATCTGTTGTGTTGTCATTGCTTCTTAAGCCAAGCAccgcctcccttctctcccccttctgtgTTCCGACATGGCATTTTCATAAGTTCGGCGTCCACAGTAATAGAGAGAGTTAATATacaaaaaaatgtcaaatgtgtattaaaaaaaaactaaaccaaACTGCTTGTTCTTTCAAGTGTGGTGAGGGTGATATCTGgcgtatttttgtttattttgttcaaATAAATAACTTTGTTACTTCTGCTGTGACAAAAATAAAGATGTCTTTCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161791 lncRNA upstream 16049 39350136 ~ 39350359 (+) True G140772
TU161790 lncRNA upstream 16623 39349525 ~ 39349785 (+) True G140771
TU161784 lncRNA upstream 18951 39341782 ~ 39347457 (+) True G140766
TU161775 lncRNA upstream 36831 39329325 ~ 39329577 (+) True G140758
TU161774 lncRNA upstream 39982 39326208 ~ 39326426 (+) True G140757
TU161816 lncRNA downstream 25048 39403334 ~ 39403625 (+) True G140792
TU161760 lncRNA downstream 31947 39410233 ~ 39412741 (+) False LOC110501538
TU161761 lncRNA downstream 31947 39410233 ~ 39412741 (+) True LOC110501538
TU161817 lncRNA downstream 44072 39422358 ~ 39422680 (+) True G140793
TU161818 lncRNA downstream 51813 39430099 ~ 39430309 (+) True G140794
XM_036947907.1 mRNA upstream 28829 39328460 ~ 39337579 (+) False LOC110489418
XM_036947908.1 mRNA upstream 28829 39328814 ~ 39337579 (+) True LOC110489418
XM_036947890.1 mRNA upstream 46526 39298409 ~ 39319882 (+) False LOC110489375
XM_021562186.2 mRNA downstream 1306 39379592 ~ 39385031 (+) False LOC110489493
XM_021562191.2 mRNA downstream 1308 39379594 ~ 39385031 (+) False LOC110489493
XM_021562187.2 mRNA downstream 1536 39379822 ~ 39385031 (+) True LOC110489493
XM_036947997.1 mRNA downstream 25535 39403821 ~ 39410519 (+) False LOC110501538
XM_036948019.1 mRNA downstream 35170 39413456 ~ 39420001 (+) False LOC110489499
TU160072 other upstream 1314664 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1422396 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1425694 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1444338 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2161009 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2590088 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2590088 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3132044 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4352586 43730872 ~ 43731218 (+) True G146054

Expression Profile