RNA id: XM_021562164.2


Basic Information

Item Value
RNA id XM_021562164.2
length 3183
RNA type mRNA
GC content 0.55
exon number 20
gene id LOC110489446
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39366408 ~ 39378288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAACATGACCGTAATTGCTGAAAAGGTTACGTTTGATATAAAGCAGATGTTGTCTATTTTGCCTGTGCGTCTTATTGTATGTCTTTGTTAGAAGTTAATTAACGTTTTAATATAGATTTGATTAATTGGCTATCTGAATTCATATTTAATTCATGTTTCTCTCTCAAATGCAACATCGCATAATTGTGCGGTAGTTTATACTCTATATATTACGATTACCACGATACCGGGTGCGTGCTATACGCGTTCGGCCTTGAGTCCACACAAACAGGGGGGCATCAAGCCATTCAttgggaggaagacagagagaggggaagagcaaTACAAACAGACAATATTCAAAGCTGGGGAATCAAAAGCTTGGGGTCCAAACTCAGGAACAAGTGTCCGACTGGAAGGCAGAATTAGTTAGTTTGAGATGGCGGAGGTAAGCGAGGTTTTGATGTCGGTTCTGTCCACAATTCGGGTTCCGAGGCCCGGGGACCGTGTCCACAAAGACGAATGCGCCTTGTCATTTTCTTCTCCGgagagtgaaggaggcttATATGTGTGCATGAACAGTTTCCTTGGGTTCGGCAGCCAGTATGTGGATAGACACCACACCAGGAGCGGACAGCGGGCTTACCTGCACATCTCCCGGACCCGCAAAGCTCCGAAGGAAGATGAGGAGAACTCTGGATCCGGTGACCCACCCAAGAAGAAGCCAACCCGATTAGCCATAGgtatCGAGGGAGGGTTCAACGTGGAGCAGGAGCAGTATGAGGAGGAAGTAAAAGTTGTCCTCTTCCCCGATAGACAGGAAGTTACATCCGATGACCTCGCCACCATGCCGGACCTTGTGAGAGAGCGGGTATCTCTAGCCATGGCAGGGCTGATGTCTGCAGACTCAGTGTCTCATGCCCTGCAGGTGCAGCAGTGGGACGGCGAGGTGCGGGCGGAGTCCCGGCACGCCGTCAAACTCAAGCAGCTCGACAACGGCACCAAGATCCCTCCCAGTGGTTGGCGGTGTGAGGTGTGTGACCTGCAGGAGAACCTGTGGATGAACCTGTCGGACGGAAGGGTGTTCTGCGGTCGCAGGTATTTTGACGGCTCCGGGGGGAACAACCATGCCCTCCTGCACTTCCAGCAGACGGGACACCCTCTAGCCGTCAAACTGGGCACCATCACCCCCGACGGAGCAGATGTGTACTCCTATGACGAGGATGATATGGTACTGGATCCAAAGCTCCCAGAACACCTGTCCCACTTTGGCATCGACATGATGACCATGGAAAAGACGGAGCATACGATGACAGAGCTGGAGATAGCGGTGAACCAGCGTGTGGGGGAGTGGGAGGTGATCCAGGAGTCAGGGGCCACCCTCCGGCCTCTGTCAGGCCCTGGCCTCACCGGCATGAAGAACCTGGGCAACAGCTGCTACCTCAACTCGGTCATGCAAGTCCTCTTCACCGTGCCTGACTTCCAGAGCAAGTACGTCTCCAACATTGACAAGATCTTCGATGAAGCTCCAAGCGACCCCACCCAGGACTTCAAAACCCAAGTAGCAAAGCTGGGCTATGGTCTGTTGTCGGGCGAGTATTCCAAACCAGCACCTGACCCCGGAGAGGGCTCTGAACCCAGCTCTGAACCCAGAGGTGACCAGGTTGGCATAGCGGCACGCATGTTCAAAGCACTTGTTGGGCGGGGCCACCCAGAGTTCTCCACCAATCGGCAACAAGACGCCCAGGAGTTCTTATTACACTTCATTAATATGGTGGAGAGAAACTGTCGTTCGGGGGTGAACCCGTCTGAAGCCTTCCGTTtcctagtagaggagaggatcgTGTGTCAGCAATCACAGAAAGCAAAGTACACGCAGAGGGTGGACTACATCCTCCAGCTACCTGTGCCCATGGACCAGGCCACCAACACCGAGGAGCTGCAGGAGGCTGAGCGTCGGCGCGAGGAGGCAGACTCGTCGGGAGCCCCTCCCCCCGCGCCGGTGCGCGCCTGTATCCCGTTCACAGCGTGCATGGCGGCGCTCAGCGAACCGGAGACTCTCACAGACTTCTGGAGCTCCGCCGCGCAGGCCAAGACCACCGCCACCAAGACCACCCGCTTTGCCTCTTTCCCTGACCACATGGTTATCCAGGTTAAGAAGTTCACTTTTGGACAGGACTGGGTCCCCAAGAAACTGGACGTGAGCATCGACGTTCCCGACACGCTGGACCTGACTGCGCTTCGTGGGACCGGCCAGCAGCCGGGGGAGGAGCTTCTGCCAGAGGTGGCCCCACCCCCTCTCATGACCCCTGACGTGGAGGTCAAAGccccagtCCTGGACGACTCCACCGTGTCCCAGTTGTGTGAGATGGGATTCCCACTGGAGGCCTGCAGGAAGGCTGTGTACTATACTGGGAATACTGGAATCGACGCAGCCATGAACTGGGTCATGGGCCACATGGACGACCCAGATTTCTCCGCTCCCATGGTGTTGCCAGGCACCAGCTCGGCTCCCGGAACCACGCCCACAGAGAGCGTTTCTGAGGAGCACCTAGCAACCATCGTCTCCATGGGCTTCAGCCGAGACCAGGCCACGCGAGCACTGAGGGCCACGAGTAACGTCCTAGAGCGCGCCGTGGACTGGATCTTCTCCCACCTGGATGATCTAGAGTCCATGGAAGTTTCGGAGGGGGGCCGCTCGGCCGCCGAGAGTGAGGGGTCCAGGGAGCCCCCTCCTGGGCCTAAAGTCCGAGACGGACCTGGCAaGTATGAGCTGTTTGCCTTCATCAGTCACATGGGCACGAGCACTATGTGCGGCCACTACGTCTGCCACATCAAGAAGGACCAACAGTGGGTTATCTTTAACGATCAGAAAGTGTGTGCCTCAGAGAAGCCGCCCAAGGACCTGGGTTACCTCTACTTCTACCGGAGAGTCACCGAGTGAACGGAGGGGGGCAGAGTTTCActtagggaggggaagagggtcgCTAACatgtacacactcacactgagCTACTAAGAATGCTCTGACACAAGCTTCTGAACTGACAAATGTAGGGTTTAAATAAATATACTTTTCCTACAGCTATGTACGCAGACACAGGCAGGTGGAATGGATGGGGTGTTTAAAGGAGAAGTGTCTTTTTTccatttttatttcacttttacaATAAACACTGTAGTGTTGGTGGAAGGCTGCTG

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161791 lncRNA upstream 16052 39350136 ~ 39350359 (+) True G140772
TU161790 lncRNA upstream 16626 39349525 ~ 39349785 (+) True G140771
TU161784 lncRNA upstream 18954 39341782 ~ 39347457 (+) True G140766
TU161775 lncRNA upstream 36834 39329325 ~ 39329577 (+) True G140758
TU161774 lncRNA upstream 39985 39326208 ~ 39326426 (+) True G140757
TU161816 lncRNA downstream 25476 39403334 ~ 39403625 (+) True G140792
TU161760 lncRNA downstream 32375 39410233 ~ 39412741 (+) False LOC110501538
TU161761 lncRNA downstream 32375 39410233 ~ 39412741 (+) True LOC110501538
TU161817 lncRNA downstream 44500 39422358 ~ 39422680 (+) True G140793
TU161818 lncRNA downstream 52241 39430099 ~ 39430309 (+) True G140794
XM_036947907.1 mRNA upstream 28832 39328460 ~ 39337579 (+) False LOC110489418
XM_036947908.1 mRNA upstream 28832 39328814 ~ 39337579 (+) True LOC110489418
XM_036947897.1 mRNA upstream 46529 39298409 ~ 39319882 (+) False LOC110489375
XM_021562186.2 mRNA downstream 1734 39379592 ~ 39385031 (+) False LOC110489493
XM_021562191.2 mRNA downstream 1736 39379594 ~ 39385031 (+) False LOC110489493
XM_021562187.2 mRNA downstream 1964 39379822 ~ 39385031 (+) True LOC110489493
XM_036947997.1 mRNA downstream 25963 39403821 ~ 39410519 (+) False LOC110501538
XM_036948019.1 mRNA downstream 35598 39413456 ~ 39420001 (+) False LOC110489499
TU160072 other upstream 1314667 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1422399 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1425697 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1444341 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2161437 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2590516 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2590516 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3132472 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4353014 43730872 ~ 43731218 (+) True G146054

Expression Profile