RNA id: TU161760



Basic Information


Item Value
RNA id TU161760
length 1793
lncRNA type read_through
GC content 0.42
exon number 3
gene id LOC110501538
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39403821 ~ 39412741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAGCAGTGACTGAGGGGTGACTGATTGGCAGCTTTATTGAAATACCTTCAGTGGTGGGTGGACACCAACACAAGTAGATACCAACGGTCACTTCTTCATCTGTTTTGACTGATTACATTACCGTGACTGGGATTCAATCCAATGCACGTTAGGGAAATGCACATTGCGTTTGACTTTAAAAGGGAATTTACACTTGATTACCACCGCGTTTACACGGAATTTGAATTCCTAAAACATGGGGAAAATCGCATTTAAAATGCACATTGTCAGCAGTGCAACCCTACAATGCGCCTTCTATTGAATCCCTGCCACTCTAAGTTCATTTCATGGTCAGCGGTGTCTTTCACCCGCTGATTCAAGGAGAAGTAGTGGGGAAGGCATCCATTTGACAGATGCGGTGGTAGAGGAATTGACAGGGCACGTCGGACCAGGCATGAGTGTTACTCTGTAGGACCACACAGTCCTCACCTTCCAGCCCACCGGAGACATTGTTATCAGGCTCCGAGCTGTACGGTTGCCAGAAGCTACAGGGaaagggaggtagggggagagaaaaTATGACGGGTAGGATGGAATTGAagtcacagagagggagagcgataaGACAGAAGAAAAAAAGTTAAAAAGGAGGGGACAAATGGTGGAGAAAAAAGCAACAGATATTTTGAGTCAATGTTGTACGTGTCATGTTGAGATTGTTGAATGGGTTTGCAGACCCTACATACTTATTTGTGAGCGTTGTGTTGTCCACCCATCTCCagtccccctccatctctctgtctgataGGCCGATCCAGAAGTAGTTATTAAACCCACCAATCCTACTTGCCTCTTTTTCCAGGGCTTCCTCGAGCTCTTGCTGTGCAGGATGCTAAGGTGGCTGCCCATTGATGTACAATTGTCTCTGCTGCTCGGCCAGTCCATCTTGTCATTACTGAAGTAGTAACATTTTTCATTTACCAGTACATGAAGCCACCCCTCAGGACACCCTGTGAAATTCACCCTGTGGCAGAGCAGTTTTTTGCCAGACTGGCATAGTTATCACGTAGGCGGCTGTAGCGACGCAGCACAGTACTCAGATCCAACTTCAGGGCTGCCAACTCTTCCTCGGGGGTCTCCCGAGGTTGAGTGACATTTGACAGGGGCTCTGCAGCTGCCTGATTGGTGTTGATGGATACCAAGAGGCCAATCAGCACAAAGAGGATGGTCTGACACGTCAGAAGTCCTGCCCACTTCTTCCCCCCCTGGGAACCTGATTGGATTGATCAAAGAGAGAGCTCAACAGAGTTATATTATACAGAATACTGTGCATGTCAGTTAGGGGACAGTTTAACCTGACTAGAATTGAGGTGACAATTCGTATTCCAGCAACAGTTCTACATACAGGATGTGTTTTTTTACGTCTTTTAAATTAATTAACCTAAATATTGTAACAAAGTGACTTGCCCAAATTTGATACACACAAgtacgcacacgcacgcacgcacacacgcacatacacacacagtggtgtaGACCGAAAAGTTTATTTTACCTTGCTTAGAATGGTAGTTCTTCATGTTCCCTGTGTAATATCACTGGTACATGGTCAGTTAACCGTCCATAAATCGAATTTGTCTCTCTTTCCACTCAGAGTTGGTGTTATATACCGACGCggcgtgtgtttgtgagtgtagGCAATTGGTTGGAAAGTACAAATTGTGGAAATAACGTTTTGCTGGACCTGAGACAGATTTGAATGGGGAAAGTGAATCAATAGATCTGGTGCAATAGCAGAAAATCTGTCATGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161816 lncRNA upstream 6608 39403334 ~ 39403625 (+) True G140792
TU161791 lncRNA upstream 59874 39350136 ~ 39350359 (+) True G140772
TU161790 lncRNA upstream 60448 39349525 ~ 39349785 (+) True G140771
TU161784 lncRNA upstream 62776 39341782 ~ 39347457 (+) True G140766
TU161775 lncRNA upstream 80656 39329325 ~ 39329577 (+) True G140758
TU161817 lncRNA downstream 9617 39422358 ~ 39422680 (+) True G140793
TU161818 lncRNA downstream 17358 39430099 ~ 39430309 (+) True G140794
TU161836 lncRNA downstream 25214 39437955 ~ 39438584 (+) True G140809
TU161865 lncRNA downstream 89346 39502087 ~ 39502310 (+) True G140834
TU161831 lncRNA downstream 103752 39516493 ~ 39550773 (+) True G140804
XM_021562186.2 mRNA upstream 25202 39379592 ~ 39385031 (+) False LOC110489493
XM_021562191.2 mRNA upstream 25202 39379594 ~ 39385031 (+) False LOC110489493
XM_021562187.2 mRNA upstream 25202 39379822 ~ 39385031 (+) True LOC110489493
XM_021562156.2 mRNA upstream 31945 39366409 ~ 39378288 (+) False LOC110489446
XM_036948019.1 mRNA downstream 715 39413456 ~ 39420001 (+) False LOC110489499
XM_036948029.1 mRNA downstream 718 39413459 ~ 39420001 (+) False LOC110489499
XM_036948010.1 mRNA downstream 722 39413463 ~ 39420001 (+) True LOC110489499
XM_036948069.1 mRNA downstream 17865 39430606 ~ 39440426 (+) False LOC110489505
XM_036948079.1 mRNA downstream 17866 39430607 ~ 39440426 (+) False LOC110489505
TU160072 other upstream 1358489 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1466221 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1469519 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1488163 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2126554 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2555633 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2555633 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3097589 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4318131 43730872 ~ 43731218 (+) True G146054

Expression Profile