RNA id: XM_021562293.2


Basic Information

Item Value
RNA id XM_021562293.2
length 1866
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110489537
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39500145 ~ 39520622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCGTAATTTTTTCCCTAAAAATCATATCCAAAGGCTAGTTCACGTCAGCTATTTTACGTAAGGGTAGTGGGAGGGTTCAGTCAGTTGATAAACCCATCCCATTCCTTAGAGACTGTGCAGATGCcatctgacctttgaccctcGGACCCTGCACCTCTGGTCCGTGCTCTATGACTTGCTGTGAGGCCATGTCTGCTGTGAACATCACCAGAGATATCCTGCACAGGCAGATCAGGGACAAGAGAGCATTGGGCTTCCAAAGGCAGTATCATGTCACAGACCCCTTCATCAGTAGACTTGGACTGGAGGCAGAGTTGCagGGCCACACTGGGTGTGTGAACTGCCTAGAATGGAACGAACAGGGAGATCTGCTGGCATCGGGCTCAGATGACCAACATTGCATCATCTGGGACCCCTTCAAACACAAGAAGCTCACCACTATGCACACAGGGCATGCAGCAAACATCTTCTCTGTGAAGTTTCTCCCTCACTCAGGTGACCGTATCCTCGTGACAGGTGCAGCGGACACCAAGGTTCACGTGCACGACGTGTCGGTCAAGGAGACCATCCACATGTTCTCCGACCACACCAACCGCGTCAAGCGCATTGCTACAGCCCCCATGTGGCCTAACACCTTCTGGAGTGCTGCGGAGGACGGCATCATCAGGCAGTATGACCTGAGGGAGAGCAGTAAGCGTTCAGAAGTGCTCATCGACCTGACGGAATACTGTGGTCAGCTGGTGGAGGCCAAGTGTTTGGCTGTCAACCCGCAAAATAATAACTACCTAGCAGTGGGGGCCAACGGGCCCTTTGTACGCCTCTACGACATGCGCATGATCCACAACCACAGGAAGTCTGCGAGTCAGAGCACATCGGCAGGAGTGCACACATTCTGCGACAGACAGAAGCCCATCCCAGACGGAGCGGGGCAGTATTAtgttgcagGGCACCTGCCAGTGAAGCTCCCTGACTACAATAACCGCCTGAGGGTCCTAGTGGCCACCTACGTCACCTTCAGCCCCGACGGCACCGAGCTGCTAGTTAACATGGGAGGAGAACAGGTGTATCTATTTGACTTGACGTTCAAACAGAAGCCGTACACCTATCTGCTTCCCAAAAAGTGCCAATTAACAGATGTTCAGAATGGAAAGACAACCAACGGTGTGTCAAATGGAATTCACTTGCCAGCCAGCCGACTTCGATTCGCAGAAAGCAAAGTTTTCTCTGGTTCTGGCGAGCTGCCTCTTCACTTGGAGCGGATAAAGCTACAGGCCAACGACGCGTTTGCGCGGCAGCAGTGGACGCAGGCCATCCAGTTCTACAGTCTGGGCATCCACGAGGCCAGCCACAACGCCATGCTGTACGGGAACCGCGCCGCCGCCTACATGAAGCGCAAGTGggaCGGTGACCACTATGATGCGCTGAGGGATTGTCTGAAAGCACTGTCCCTCAACCCTGGGCACCTGAAGGCCCACTTCCGGCTGGCACGCTGCCTCTTTGAGCTGAAGTATGTGGCCGAGGCTCTGGACTGCTTGGATGACTTCAAGGGCAAGTTCCCCGAGCAAGCCCACAGCTGCGCCTGCGACGCCCTAGATAAGGATATCAAGGCCGCCCTCTTTTCCAAGATGGACTCTGCTGGGGACAAAAAGGGCAACAGCTCAATCCGCTTCCACACGTTCAGCAGGAAGGAGTCCATCCCGGAAGACGAGGTCGTCTTGAGAGAGCGCAGCTACGACTACAAACACCGCTACTGTGGTCATTGTAACACCACCACAGACATCAAGGAGGCCAACTTCTTTGGCAGgaaaatgccacgggtcACTatgtgatgtgtggagacattacactgcagctaatgtagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161865 lncRNA upstream 1030 39502087 ~ 39502310 (+) True G140834
TU161836 lncRNA upstream 64756 39437955 ~ 39438584 (+) True G140809
TU161818 lncRNA upstream 73031 39430099 ~ 39430309 (+) True G140794
TU161817 lncRNA upstream 80660 39422358 ~ 39422680 (+) True G140793
TU161760 lncRNA upstream 90599 39410233 ~ 39412741 (+) False LOC110501538
TU161831 lncRNA downstream 2445 39516493 ~ 39550773 (+) True G140804
TU162239 lncRNA downstream 46831 39560879 ~ 39561194 (+) True G141146
TU162241 lncRNA downstream 48387 39562435 ~ 39562737 (+) True G141148
TU162331 lncRNA downstream 182313 39696361 ~ 39699522 (+) True G141226
TU162351 lncRNA downstream 211115 39725163 ~ 39725428 (+) True G141245
XM_021562252.2 mRNA upstream 17946 39469654 ~ 39485394 (+) False ubxn11
XM_021562244.2 mRNA upstream 17946 39469655 ~ 39485394 (+) True ubxn11
XM_036948069.1 mRNA upstream 62914 39430606 ~ 39440426 (+) False LOC110489505
XM_021562306.2 mRNA downstream 7515 39521563 ~ 39524931 (+) True LOC110489572
XM_021562317.2 mRNA downstream 13554 39527602 ~ 39530858 (+) True LOC110489581
XM_021562327.2 mRNA downstream 26658 39540706 ~ 39547363 (+) True LOC110489590
XM_036948220.1 mRNA downstream 55437 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA downstream 55473 39569521 ~ 39766378 (+) False znf407
TU160072 other upstream 1451596 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1559328 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1562626 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1581270 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2025247 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2454326 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2454326 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2996282 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4216824 43730872 ~ 43731218 (+) True G146054

Expression Profile