RNA id: XM_021562272.2


Basic Information

Item Value
RNA id XM_021562272.2
length 4134
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110489537
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39500145 ~ 39520622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTAAGTAAGCATTGACAGTCAACacttgtaaattctttccaaaaATATGTCATATGAAGCGCTCTTGTTACAGTTTGTCTTTCATTGCCCATTCCTTAGAGACTGTGCAGATGCcatctgacctttgaccctcGGACCCTGCACCTCTGGTCCGTGCTCTATGACTTGCTGTGAGGCCATGTCTGCTGTGAACATCACCAGAGATATCCTGCACAGGCAGATCAGGGACAAGAGAGCATTGGGCTTCCAAAGGCAGTATCATGTCACAGACCCCTTCATCAGTAGACTTGGACTGGAGGCAGAGTTGCagGGCCACACTGGGTGTGTGAACTGCCTAGAATGGAACGAACAGGGAGATCTGCTGGCATCGGGCTCAGATGACCAACATTGCATCATCTGGGACCCCTTCAAACACAAGAAGCTCACCACTATGCACACAGGGCATGCAGCAAACATCTTCTCTGTGAAGTTTCTCCCTCACTCAGGTGACCGTATCCTCGTGACAGGTGCAGCGGACACCAAGGTTCACGTGCACGACGTGTCGGTCAAGGAGACCATCCACATGTTCTCCGACCACACCAACCGCGTCAAGCGCATTGCTACAGCCCCCATGTGGCCTAACACCTTCTGGAGTGCTGCGGAGGACGGCATCATCAGGCAGTATGACCTGAGGGAGAGCAGTAAGCGTTCAGAAGTGCTCATCGACCTGACGGAATACTGTGGTCAGCTGGTGGAGGCCAAGTGTTTGGCTGTCAACCCGCAAAATAATAACTACCTAGCAGTGGGGGCCAACGGGCCCTTTGTACGCCTCTACGACATGCGCATGATCCACAACCACAGGAAGTCTGCGAGTCAGAGCACATCGGCAGGAGTGCACACATTCTGCGACAGACAGAAGCCCATCCCAGACGGAGCGGGGCAGTATTAtgttgcagGGCACCTGCCAGTGAAGCTCCCTGACTACAATAACCGCCTGAGGGTCCTAGTGGCCACCTACGTCACCTTCAGCCCCGACGGCACCGAGCTGCTAGTTAACATGGGAGGAGAACAGGTGTATCTATTTGACTTGACGTTCAAACAGAAGCCGTACACCTATCTGCTTCCCAAAAAGTGCCAATTAACAGATGTTCAGAATGGAAAGACAACCAACGGTGTGTCAAATGGAATTCACTTGCCAGCCAGCCGACTTCGATTCGCAGAAAGCAAAGTTTTCTCTGGTTCTGGCGAGCTGCCTCTTCACTTGGAGCGGATAAAGCTACAGGCCAACGACGCGTTTGCGCGGCAGCAGTGGACGCAGGCCATCCAGTTCTACAGTCTGGGCATCCACGAGGCCAGCCACAACGCCATGCTGTACGGGAACCGCGCCGCCGCCTACATGAAGCGCAAGTGggaCGGTGACCACTATGATGCGCTGAGGGATTGTCTGAAAGCACTGTCCCTCAACCCTGGGCACCTGAAGGCCCACTTCCGGCTGGCACGCTGCCTCTTTGAGCTGAAGTATGTGGCCGAGGCTCTGGACTGCTTGGATGACTTCAAGGGCAAGTTCCCCGAGCAAGCCCACAGCTGCGCCTGCGACGCCCTAGATAAGGATATCAAGGCCGCCCTCTTTTCCAAGATGGACTCTGCTGGGGACAAAAAGGGCAACAGCTCAATCCGCTTCCACACGTTCAGCAGGAAGGAGTCCATCCCGGAAGACGAGGTCGTCTTGAGAGAGCGCAGCTACGACTACAAACACCGCTACTGTGGTCATTGTAACACCACCACAGACATCAAGGAGGCCAACTTCTTTGGCAGTAAAGGCCAGTACATTGTGAGCGGCTCCGACGACGGCTCCTTTTTCATCTGGGAGAAGGAGACTGCTAACCTGGTGCGGATCCTCCAGGGGGACGAGTCCATAGTCAACTGCCTGCAGCCTCACCCCAGTTACTGCTTCCTGGCTACCAGCGGCATCGACCCTGTGGTGCGGCTCTGGAACCCCAGGCCGGAGACGGAGAGTGAGAGTGGGAACGGTCGCGTGGTGGAGGACATGGAGGGTGCCGCTGCAGCCAACCAGCGGCGTATGAATGCCGATCCCCTGGAGGTCATGCTGCTCAACATGGGTTACCGCATCACGGGCCTCAGCGGCCGCGGGCCAGAGGGCTCAGACGATGAGGACAGCTCAGATGGCCAGGTGCAGTGCCGGCCCAGCTAGACTAGCGGGCCCAACACCACATACAGTATGAAGGCAGCAGGACGCAAGGCACTCCTCCCCTACCCCCTCCCAAACCCTgaggctgtctgtgtgtgtgtctgtgaggaggGGAAAAAAGCACCATAGATATTCTGTTTGTCAATGTTTCATTCACCCCTCTAAAACGAAAGCAACATTGAGTGAATGTCATGTCACAGCTCTGCACTATGCACTGCCCTCCTCTTTCACATCCCGAGGCAGGATTGGAGGAAACCAGTTTGGCGAGGGGATTCCACGGGGGTGACGACGACGACCTTTCACCTTTTTTTTAAGAACACCAACGACATCACCTCGGCCTCTCCCTCCGTTGCTCCGAGGCTGGGGGTATTGGGCCTATACGGTAAagaagcactccatcactccccaaTCTCTCACTATGAGCTAGGAGTCAACCACTTCTAAACCCTCTTCAAGGAGGAGCGCGTTGGAGGGAAACACTACAAGCAGAAGCCCCCGGCCTCTGGTAGTGTAGCCTACAGACGgctcagaggttagaggtcaaagCGAGGCCCCGATAGTCGGTGTCCTCATTGGAGGATGAGATTTGAGGCCACAGGAAGTTGCTTTGTTTCATCTCTAGTGGGCTTTTCAATTGGAGTATAAGAGGtcacactcagcccctctccagcTCCGAAAGTCTCTACATAAAGTTTTTGATTTACAATCCTTTTTTTAAGTTGTTGGAATATTGGTCAACAGGAAGAGAGCACAAGAAGTCTTGACTTTAAGTGTTACCCAGTCTTGAAGTGTTTCTCCAACTCAAATTAAATGTGTTGATAGGATTGTGCTCCTTGTTTCTTTTAAACTCGgtctgacaaaaaaaaaaaaatgtttttctctgCATTTGTACTAAGTTTTGAGAGTAAAAAATGGCCAAGGATCCATGTTGCATTTTGCTTTGTCTGTTGTTGAGAAGTTCTTGTGGCTCTATATGCCTATTTTATTGACAGGTATGCAAAATGTTTCCCTTTTACTTTTATTATGTAGGTTAAGACAAAGCTGTCAGACTGAAGCAGTAGCTCCTCACATTttctccaacacttagacatttGCTCCTCTGTCATTTGTTGATAACAATGTAGAGACGGCTAATTCTAAAGGAGGGTTGTGGGGTTACGTTTAGGGGTTTGATTTAATTGATAGTCAGGTGTTGATTGGTCAGAAAATCTGTATAACTTTGTTGTACTAAAGGTTGCAAAATTCAGGTAATTTCCACAAGTTTCCCAGTTTTTCGAGATATCCCGGTCGGTAGATAACCGGGATTCGGATGGAATAAGCACAAAATCGGGAATCTTTCAACCAGTATTTCTAGAAAACCTGGGAATTATGGGAAAGTTAACCTATGTTGGACTGACGCtctgaacagagagagggaaagtgaagAAGAGAGAATGGTATTTCACTATCCTAGGGCAATACCACCAGTCCTAATATCATTCATGCATGGCATAGAGGCAATTTCATAGACACTATCCATTTGATGTCTTTTGGGGTTCAGGATCCCTACACGAGCACTTTCAGCTTTTCCCAGAAAGTTTTGGGGGAAGAATGGGATAGGGATTTTTCCCTTCCTGTAGCTTTGGAGCCAGCATGAGTCCTCTGCTGCAGTTGGAGTTTTGCTTATGAGGTTATATGAGATTTTGTCTAAAGGTAACATTGTAAAGGGCAAATTTGGACAATGAGCCTCTTGGTCCTCTGGCCAACCAGCAAACCTCCAGCTCACTGATGACGTGGATTCAAAGAAAACCTAAGGATGGAATCCTCTAACACTAGGCTTCCATGTATAATTTTTGTTAAAAAAGTCATTTAAGACATTTTTTTATCTGTTTGTTTTCTTTGGGAAAAATCCAATGACAAATTTTGCTGCAAGAGAAAAATAAAAGAGGTCTAATATTGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161865 lncRNA upstream 1126 39502087 ~ 39502310 (+) True G140834
TU161836 lncRNA upstream 64852 39437955 ~ 39438584 (+) True G140809
TU161818 lncRNA upstream 73127 39430099 ~ 39430309 (+) True G140794
TU161817 lncRNA upstream 80756 39422358 ~ 39422680 (+) True G140793
TU161761 lncRNA upstream 90695 39410233 ~ 39412741 (+) True LOC110501538
TU162239 lncRNA downstream 40257 39560879 ~ 39561194 (+) True G141146
TU162241 lncRNA downstream 41813 39562435 ~ 39562737 (+) True G141148
TU162331 lncRNA downstream 175739 39696361 ~ 39699522 (+) True G141226
TU162351 lncRNA downstream 204541 39725163 ~ 39725428 (+) True G141245
TU162354 lncRNA downstream 208138 39728760 ~ 39728997 (+) True G141248
XM_021562252.2 mRNA upstream 18042 39469654 ~ 39485394 (+) False ubxn11
XM_021562244.2 mRNA upstream 18042 39469655 ~ 39485394 (+) True ubxn11
XM_036948069.1 mRNA upstream 63010 39430606 ~ 39440426 (+) False LOC110489505
XM_021562306.2 mRNA downstream 941 39521563 ~ 39524931 (+) True LOC110489572
XM_021562317.2 mRNA downstream 6980 39527602 ~ 39530858 (+) True LOC110489581
XM_021562327.2 mRNA downstream 20084 39540706 ~ 39547363 (+) True LOC110489590
XM_036948220.1 mRNA downstream 48863 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA downstream 48899 39569521 ~ 39766378 (+) False znf407
TU160072 other upstream 1451692 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1559424 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1562722 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1581366 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2018673 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2447752 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2447752 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2989708 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4210250 43730872 ~ 43731218 (+) True G146054

Expression Profile