RNA id: XM_036948220.1


Basic Information

Item Value
RNA id XM_036948220.1
length 7063
RNA type mRNA
GC content 0.52
exon number 9
gene id znf407
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39569485 ~ 39766378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATCTAAATCGGAACTTTCCGAGTTGTCCTGAACACCGCATTAGCTTGCTAGAGTGACGTATGGTACGTGCTACGGTACGCCACTTGTGACCAAGGGGGAAAAGCGCGGACATTGAGAATACTGGGGAAATTGTAGGAACAGGATCATAACTTAATTGATTGCTGGAACAGAGTCCAATTTCCTCTTCTCATGTAAAGGCATCAGGAGTTGTCTAACATGGACAGAGAATTAAGGTCAGGGAAGGAGATTAATGAGGACACGGTGCCTCATCATGGGGACACAGGACgtgtctccacagaggaaatggAAAGTGGAGGAATTCCTCCCCTAGCAAAGAGGCCCAGGCCTGATGATGTCACAGCTGACAGCACAGGAGAGATTGAGGAGGACACCGGCGGTAAGGTGGCTGATGGGAAGGAGTCAGACCAGACCCCTCGGGTTGAGGTGAACATTACCCCGGAGACAGGTTACGGCTGTGCCTGTCCCATCTGTGGCTTTGTGGCCAAAACTCCAACTGCCTTGAAGATTCACTCCAAGAGGAAGCACACCGGTCGAGGAAAGACCAGGGCTGTGAGCTCAGCTGAGGTACTTGTTGAAATAGATGGCTCCACAACCGGAGCAACAGCACCGACATTGAATTACAAGACAGGTGGAGACACTGAGGAGAAAGTGAGCAGCAGTGAGAGACAGCAGGATGCCACAGAGAGTCAGAGCCAGGGCACAGAGCCAGGGGGTTCTGAGGGGGAGGGGACTACAATAATAGCCCAAGACGAAATTGCTGAGAAACAAGGGACAGGGAGAGATACTTTTGATATGAAGGTGACTCCAATAGCTGCAGAAGAGGAGCAAGAAAAGACCCCCGGTAAGAAGATAGTAGGTAAACGGGGCCCCAAGCCCAAGACTATACATGCTTGCAGCTACTGTGGTCACGAGTTTAGGGACAAGCCAAGCCTAGATACACACATCAAGAGACGCCACACCAAAGAGATGAATTACTTCTGTGAATTCTGCTTGTACGCCTGTGTGGCAAAGTGCGACTACGAAAAGCACTGCCTTAGTAACAAGCACAACAAACGAGTCGCGGAAAGCAGGGAATCCTCTGGCCTCGCGTCACCCACGGACAAGAAGACAGCCGAACAGGCTCAAATCTTTGCCTCCACGACGACTCAGACCCGGGCGTCCAAGCGTGCGCTCGGTGCCAGGTTCCAGCTGCAGTGCGAGAGTTGCGAATTCAGGGTCAGCAACTCTGCTTTGCTGGAGAGCCACGCTCGGCTAAAGCACCATGGCGAGCATCGCTTCCTCTGTAACGTCTGCCACTACTACACCGCTACCTCCGAGTGGATGGACACGCACGTGTCCTCGGAGAGCCACCAGCGTGTGGCTGAGGAGAAAAACACAGGGTCCTCCTTTGAGGAGTGCGTTGAGAAGGTGAGCAGAGATTCGATCGGTGACGACATGCTGACAGATGACGTGGCAGTAGGGGTCACCGGACACGATGGAGAGCTGCAACCTGATGTTAATGAGGAAGCTGTTGAGGCTGCGAAAGTCGTGTTGGAGAACATGGAAGAGCACATGGACGAGAAAAGCCCCCccaagaggaggagaggcaggccaAAGGGGCCCGCTGCAACTACATGTGAACACTGTGGCCTTCTCGCCTCCAATAGTACCAATCTAAATGTGCACATTCGTCGTAAGCACAGCCGGCAGTACAGCTTCACCTGCAGGCTTTGTTCTTACAACTGTGTGACGAAAGGCGACATGGACCGACACTGTGTCACAAAGAAGCACCTTAAACGCGTGGAGGATGCTAGCAGCGATGGCCAAGTGGACCTGGATACATCAGTGCAGGTCGTGAGTACAGAGTCAGGCTCTCAGGCCAGCGAGGGTGAGGCTATACATCAGAATAGTCCAGTCAGAGAAGGGtccaaaggagaggagggggccaCGGACAAAACAGGGGAGCTGTCACAAGACGGCGTCAAAGCACAAGTGAGCAGCCCGAAAAAGAGCAAGTACGACTTGGTCAACTCCTGCAGCCATTGCAGCTTCGTAGCTCATTCGATTCCCTCCCTCGACCTCCACGTGAAGAGGAGACACACCCGGGACTTTGAGTTTGTGTGCCTGGCATGCAGCTACTACGCGGTCACGCGTCGGGAGATGTCTCGTCACGCCGCCACGGACAAGCATAAGCAGAAGAGTGAGGTCTACCTAGAGAACCTGGAGAGCTTTGTGGTGGAAGACCTGGCACACCCGGAGGAGGAGTCCATGGATCTGGGGAACAGAGCTGACCCTGATGCTGACAACAATGCTCACTCTGAGGATCCCTCCCCCTCAGTGCCCCCTGACACAGACATAGACCAGCCCACAGACACAACTACAGACCAACCCACAGAGACAGAGCAGCccaacaacacagacacagaccagcCCCCTATCATCGATACAGAACAACCCATAGACACAGATGCAGACCAACCCACAGAGACAGAGCAGCccaacaacacagacacagaccagcCCCCTATCACCGATACAGAGCAACCCACAGACACAGCTACAGACCAACCCACAGACACAGCTACAGACCAGCCCACAGACACAGCTACAGACCAGCCCACAGACCAGCCCACAGGCACAGCTATAGACCCGCCCACAGACACAGCTACAGACCAGCCCACAGACACAGCTACAGTCCATCCCACAGACACAGCTACAGACCAGCCCACAGCTACAGACCCGCCCACAGACACAGCTACAGACCAGCCAACAGACACAGCTACAGACCATCCCACAGACACAGCTACAGACCAGCCCACAGCTACAGACCAGCCCACAGACACAGCTACAGACCAGCCCACAGACACAGAGCATATTACCACTAACCCCACACAGACTTCTGACGTTTGGAGCAATGAGCATGCAGCTACAATAGTGGAAGTTAGTGGCACTGTTGTTGAGGAAAACACGGAGATCCAGGTGGCTGGTGAGGCGTCTGGTGGTGGCTCGGAACAAACCAGCAACGAAGCTCCAGGTACGATTGAGCCTCAGGAAGCACCAGCAGAAATCACCATAACACCGCCTGAGGAAGGCCAGAAGGAAGGGGCCGAACCCGAGGCAGAACCAGAGCTATTCTGTTCAGACGACGACGTTGAGATGGCTGATGAGAAACCTGACATCTCTTCCCCAGAGAAACAGCTCACCAGGGCGCTGCCGTTCGACGCTTGCATCATACCTCTCAAGTCCTTGACTGAAGCCGAGCTGGCTTTGCATGAAGAACGCATGGCTCACTCTGTTGAGGGCCACTCTGGCCTGGCTGTAAGTGGCCTGGCCGGGGCGGGCAGTTTTCAGAAGATCAAAAGAACCAAACCTGTAGGGTCTTCAGGTCTGTCCAAGGGGTTAACTCCCAACCCCCGCATCCGCTGCGAGGACTGTGGCTTCGTGGCGGACGGCATGAGCGGCCTCAATGTGCACATCTCCATGAAGCACCCGTCCAAGGAGAAGCACTTCCACTGCATGCTGTGTGGCAAGTCCTTCTACACAGAGAGCAACCTGCACCAGCACCTGACCAGCGCCGCCCACCTGCGCAACGAGCAGGCCAGCATCGAGGAGCTTCCGGAGGGCGGCGCCACCTTCAAGTGCGTGAAGTGCACGGACCCGTTCGAGACGGAGCAGGAGCTGTTCGTGCACATCAAGGAGAAGCACGAGGAGCTGTTGCGCGAGGTCAACAAGTACGTCCTGGAGGACACGGAGCAGATCAACCGCGAGCGCGAGGAGAACCAGGGCAGCGTGTGCAAGCACTGCGGCAAGGTGTGCAAGAGCAGCAACTCCATGGCCTTCCTGGCTCACATccgcacacacacagGATCGAAGCCATTCAAGTGCAAAATCTGCAACTTTGCCACCGCCCAGCTGGGTGACGCCAGGAACCACGTGAAGAGACATCTGGGCATGAGAGAGTACAAGTGCCACATCTGTGGgtgGGCCTTTGTGATGAAGAAGCACCTGAGCACTCACCTGTTGGGGAAACATGGACTGGGCCAGCCCAAAGAGAGgAAGTTTGAGTGTGATCTGTGCGACCGGTCGTTCAGTGAGAAGTGGGCTTTGAACAACCACATGAAGCTGCATACGGGGGACAAGCCCCATAAGTGTGCCTGGCCTGCCTGCCACTACGCCTTCCTCACCCTGTCTGCCATGAAAGACCACTACAGGACACACACGGGAGAGAAGTCCTTCCTGTGTGATCTCTGTGGTTTTGCGGGTGGCACGCGACACGCCCTCACCAAACATCGCCGCCAACACACAGgAGAACGGCCTTTCAAGTGTCAGCTGTGCGGCTTCGCCTCCACCACCCAGTCCCACTTGACCCGCCACAAGCGggtgcacacaggggagaagccctaCCGATGCCCCTGGTGCGACTACAGATCCAACTGTGCGGAGAACATCCGAAAGCACATCCTGCACACGGGGAAGCACGAGGGAGTGAAGATGTACAACTGCCCCAAGTGTGACTACGGCACCAACGGCCCCATGGACTTCAGGAACCATCTGAAGGAGCATCACCCTGACATCGAGAACCCTGACCTGGCCTACCTGCACGCAGGTATCGTGTCCAAGTCGTTCGAGTGTCGTCTAAAGGGCCAGGGAGCCACGTTCGTGGAGGTTGACACAGCGTTTGACGGGGCCTTCCCGGTGCGGAGGGTGGGCTCCATGGAGGGGCTGGAGGGCCAGGAGAGTGTCCAGCAGGTGATTATCATCCAGGGTTACGGCGATGGGGAGATGGCCTTCGACCAGGCCCTGGAAGAGTCAGCCGCTGCCACCCTGCGGGACCTGGCCATGGCGGGCCAGGTGGCCGAGGTGCTCCACATCACCGAGGATGGCCAGGTCATCTCCTCAGGGAGGGAGGTGTCTGCAGGCGGGGCACATCACCTGGCCGGAGGCACCACCCAGTACGTCCTGCTGGAGTCCGGCGGGTCTGCAGCCGGAGGTGGAGGTCACGGGGGAAGGGCGATGCACCACCACATGGTGTCGGAGTCATCCACGGCTCTGGATGCCCTCCTCAGTGCCGTCAGCGAGATGGGCCAGCAGGAAGAAGACAGCCAAGAGGTCATGACCCAGGAAGTTGTGTCAGAGGTCATGGAgcgagtggaggaggaggagatggaggtggaggtgaagacggaggaggaggtgtgcgAGGAGCAGCAGGTGCAGGAGGAGCAGGTGGTCCAGGAGGTGCTGCAGTTTGCAGCCAGCCAGCTGATGATGAAGGAGGGGCTGACCCAGGTGATCGTCAACGATGAGGGGACCCACTACATCGTGACAGAGCTGGATGATAACACCCTCCAGGTGGAGGGGACCATGTACACCCAGCACCAGGGAGGGGAGGACGACCAGCAGAGTGAAGGCGTTTCAGAGGGCCAGGCTGGGGAGAGGATGGTCTACTACCTGGATGGAGCTCCACACAACGTGGTTCTAGAGAAGGTGGAGGTGGACTAGTCAGTGACTGTGGCAAGTTTCCTTGATTCCTCGAGTCCTCTTTCCTCACCTTCTCAAAAGCAGTTGGATAAGAAGTTATAGGGGagtgacctctgaccttttcATCCattgggttttgagaaggaggagagaggatgcaagaaatcaaggaaatgcaattgagacTCTCCCTGTGTGATGAACAAATGTCCAGCTTAAAGCCCTTAAgagtctttctctgtctctttcatggaaaatgtcattattttttttacatagctTTATCTCCATTTTGTAACGATTTACTCAGGATAACCTTGACATCTATGGAGTTATAGTGAGGGGCGAAGTTTATTGCTAACATTATTTAACATATGCATAATTTTACAGCCAATGGCAGAATTACCACTTGTTTTTGGAGTCATGACTGGAAATACATAGGCTATTTTCACATGGttctatttttttaaatgtgttcaattacaaaaataataattttaagaTGACATTTCCAGCAGGACATTTTCCCATTACCTAGAAAGACTTACAGTCTTTAAGTTGCATGGTTTGGTTTTATTGAAAGTTAGAGAATAATAACAGCTTTATTTTCAAGGACATTTTCACCCCAAAAAatgatattttggtatttgtttaatTAGTCCATTATTGATACAGTCCCACAAGGTTTTGCATGTCATCAATCACTTTTTGAAGATATATAACTTTcgaaatatagaaatacagccGGTGTGATGCATTTTGCGTCATGATGCAAAATGCAGCATCATGTGGTGTCAAATGCAGCATCATGTGGTGTCAAATGCAGCATCATGTGGTGTAAAATGCAGCATCATGTGGTGTAAAATGCAGCATCATGTGGTGTCAAATGCAGCATCATGTGGTGTCAAATGCAGCATCATGTGGTGTAAAATACAGCATCATGTGGTGTAAAATGCATCATCATGTGGTGTAAAATGCATCATCATGTGGTGTAAAATGCATCATACCTGCTGTacttctgtattttgaaagttacatctCTTGAAGACTTGATTGcggacatgcaaaacatttctgtactatatcaacaatggactaataaaacaaataccaaaatatcgttttttgggtggagttttcctttaagtaGTGAATTAATTTGCAATTAAAAAtgtaattctttttttttttgctcatttAAAAAGGTACATTAATAGGTCATGTTTTGATAAGACCGGCTATTACAACTTACCTTGCTGAATCTAGGACCAATAGTATTTTGGACATCGAAAATATCCAGGAGGCTGATTGGTCTAAATCCAGGGGCAGTCCAATGATTGGCTTTTCTTTCAGCAATTGCTCAATATGGTCAGGATGCTGATTGGTCTGAATCCATGGGCAGTCCATCTGTTTTTCAGGATGTTCTCAAAATGTGTTTCTGATAATCATAATTCAATTCAAGTtgacaagtattttttttttcattggcTTTACTGCTCTCAGTCAATGTAAATATATGTTTCTGTAAATGAAATTGTAATGATACTGGCATTTGAGTAATGACAATAAAGCTCAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162241 lncRNA upstream 6748 39562435 ~ 39562737 (+) True G141148
TU162239 lncRNA upstream 8291 39560879 ~ 39561194 (+) True G141146
TU161831 lncRNA upstream 18712 39516493 ~ 39550773 (+) True G140804
TU161865 lncRNA upstream 67175 39502087 ~ 39502310 (+) True G140834
TU161836 lncRNA upstream 130901 39437955 ~ 39438584 (+) True G140809
TU162496 lncRNA downstream 2743 39769121 ~ 39769405 (+) True G141367
TU162499 lncRNA downstream 4801 39771179 ~ 39771552 (+) True G141370
TU162501 lncRNA downstream 5936 39772314 ~ 39772515 (+) True G141372
TU162506 lncRNA downstream 9116 39775494 ~ 39775716 (+) True G141377
TU162507 lncRNA downstream 9932 39776310 ~ 39776512 (+) True G141378
XM_021562327.2 mRNA upstream 22122 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 38627 39527602 ~ 39530858 (+) True LOC110489581
XM_021562306.2 mRNA upstream 44554 39521563 ~ 39524931 (+) True LOC110489572
XM_036948160.1 mRNA upstream 48863 39503341 ~ 39520622 (+) False LOC110489537
XM_021562345.2 mRNA downstream 55502 39821880 ~ 39862520 (+) True LOC110489609
XR_005036684.1 mRNA downstream 349580 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 349580 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 350054 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 350387 40116765 ~ 40225332 (+) False LOC110489640
TU160072 other upstream 1517741 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1625473 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1628771 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1647415 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1772917 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2201996 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2201996 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2743952 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3964494 43730872 ~ 43731218 (+) True G146054

Expression Profile