RNA id: XM_021562345.2


Basic Information

Item Value
RNA id XM_021562345.2
length 5663
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110489609
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39821880 ~ 39862520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCGAGGGGAGGAGTAAAAATGAAGCAGGAAAAGCCACTCGATGCGTCTGTCTATCAGTTGAGACTGTCTGAAACGCTTCTCGATTCCCTGCGTTTTCATTTTTTTCCTCGGAGGAGCAGACGAGACCTCGGTTCACTCCCTGGAGTTTACAGAAGAAAAATTCTCTCCGCGAGGGTGGATGCCTGCACCTTGTTTGTTTCTCTTTAGTCGCAGGCTCCTCACCACTTCAACCACCTGCACATTCCTTGATCGGCGGCTGATAATAATTATTTTCCACGACTAGAAATATCTGAGCTTGAAGCGCAGCCTTCCACGGAAATACATTTCAAAGGTGTTCGCTCACACTGGACTTATTTGTTTACCATCAGAGTTTATTTATTTTGGAGTGAAGGCGGTACAAAGTAGCCCCAACACCGCCATATAGCCCCCTATGGCAGCAGGGGAGTGACTGAAACTTGGCTTCGATGTCTGCCTCTTTTTCTGACACACAGTGATGAGGAAAGATGTTATTTGATAGACATGTTCTCAGCTGGCGAAATTCGTGCATCGTTTTGATATCACAGAACCCCTTTTTTTTCGTTTGTCCTTTATCTTCAGTCATTTGTTTCTATTCGTAGGCCTAAAGGACATATTTAGTTATATTGTGGCCGTTTCAGGTTGTCTGGCATAAGCCCACAATTACAAAAGAAACAAACCATTCTAATAGAAAAAACTGTTGACAGTTATTtcccgaaaaaaaaaaaaaggttcggGATGGTTTTTCTCCACTGACAGACTAATTGTTTTGATTCCTGCATGAAAAGTACCGTGGAACGTGACGGTCACTATGCCGAGGAGAAAGCAGCAAGAGCCCAGGCGATCAGCAGCTTACTCACCAGAGGACGAGTTTAAGGCTGGAGCAGTCGATGAGGAACACCTGCAGGATGACGGGCTGTCACTGAACGGGGAGGACACTGCGTACCTTTGCAAcgaggaagaggatggaggaCAGCCGCCCAGCTACCGGGCCTCTCCACTCAGTAATGGCACCAACCCAGACGCTGGCTACGGCTCCCCGCTCAGCGATGCCAGTGACCGGCTCACAGActacaagagcacctcctccagggaTGGCCATGAGAGGGAGGAAGCCCCCCTCCCTTCTGGACTGAACAATGGCCTCTCACTGAGGGACAGCCTGGCTCAGATGAAAGCTGTCTATGCAAACCTGATCTCAGATGCCTCCTGGTCCAGCATTGCCATGGACATCATGAAAGCCACGCCTGCTACTGCTGGCGCCATCCCCATCCCCACCGCCACCAgccccaccactaccaccacacacaacaacaaccacagtgaGAACAGCAATGCTAGCAGCCACCACCACAATGGGAGAAGAAGTACGGCCACCGCCAACCACCAAACAAGCAGTGGCAGTGGCAGCTCTAACGGCACCGTGGCTACCTCCATCAGTAGCAACAGTGGCACCAGCAGTGGCGGTGGCAGTGCTAGTAACGGTGGGGCTGTGGCCTATGACTGGCACCAGGCAGCCTTGGCTAAGACCTTCCAGCATACCCCTTACCAACTGCTGCCTGAGCCCAGCCTGTTCAGCACGGTACAGCTCTACCGCCAGAACAACAAGCTCTACGGCTCAGTCTTCACCGGCGCCAGCAAGTTCCGCTGCAAAGACTGCAGCGGCGCCTACGACACGCTGGTGGGGCTCACGGTCCACATGAACGAGTCGGGCCACTACCGTGACGACAACAAGGACAAGGAGGAAGAGCGGGGCAAGCGCTGGTCCAAGCCCCGCAAGCGCTCCCTGATGGAGATGGAGGGCAAAGAGGACGCTCAGAAGGTGCTCAAGTGCATGTACTGCGGCCACTCCTTTGAGTCTCTGCAGGACCTGAGCGTCCACATGATCAAGACCAAGCATTACCAGAAAGTGCCCCTCAAAGAACCAGTGCCTGCCCTGGTCACTAAACCGATGCCCTCTGCCAAAAAAAGAGCCCTCCAGGACGCCCTAGTATCCCCATGCTCCCCAGACTCTGTCCATGGTAGCGGTGGCCACATGCCCCAAGGGGACGTTGGGAAAGACCCCAAGTCCACGACAAACCCCTATGTCACACCCAACAACCGCTACGGCTATCAGAACGGTGCCAGCTACACTTGGCAGTTTGAGGCTCGCAAGGCCCAGATCCTGAAGTGTATGGAGTGCGGGAGCTCCCACGATACACTGCAGCAGCTGACTGCCCACATGATGGTCACAGGCCACTTCCTCAAGGTCACCAACTCCGCCTCAAAAAAGGGCAAGCAGCTAGTGTTTGACTCAGTGGTGGAGGAGAAGATCCAATCCATCCCTctgccacccaccaccaccaggcttcCCGTCCCCAGCGTCAAATCTCAGCCTGTCTCCCCTGCACTCTCCTGCGGCTCTGACGAAAAGAGAGAACCGGAAGACGAGAGGATGGAGGCAAGTGAACCCAGGGAGAAAAAGatcaaagaggagaaggaagagccAGGTGAGAAGACTGAGGTGAACGCTGGGTCGTATAAATATCTGACAGAGGAGGACCTGGAGGAGGCTCCTAAAGGAGGTTTGGACATCCTCAAGTCCCTGGAGAACACTGTGTCCAGTGCCATCAGCAAGGCCCAGACGGGCACGCCCCAGTGGGGTGGTGGCTACCCCAGCATCCACGCTGCTTACCAGCTCCAGGGCCACATGAAACATGCAGCACTGCACTCCTCGGTCCAGAGTGTGCAGATCCAGCCGGTGTTCAACAGCGGGCTCCGCGGCCTGGTGAACCAGGACTCAGGCTCAGTGAGCCACTCCCCCAGGAGCCCTGCATCTCCGCCCTCTCTCAGGAGCAATGTTACTGCCATGGAAGAGCTGGTGGAGAAGGTCACAAGGaaagctgttgctgctgctgtgaagaaagagaaagaggagaagatggtCAGCTTGGACCGCCACAGGCATTCATCCTCCATCAAGTCGCCGTCTCCTGTACTGAAAGAGCAGAGGGACCACCAATCAGGGCCCAATGACCTCACTGTCGGGAAGCCCCTCGTGAGGAACAGCAGCCCTGGAAATTTAGAGTCGGAGCTGGTCTGCAAAAAGGAGCCCAAAGAGAGCCTGGTAGACAACCACCACAGCCATTCAAAGAACGGCCCAGAGACTCGCCAGTCACCCATCACCAACGGCACCAACAGCTTGGGCATCATCACCGATCACTCACCAGAGAGGCCTTTCATCAACCCCCTCAGCGCACTTCAGTCAATCATGAACAACCACCTGGGCAAGGCATCCAAGCCCGTCAGCCCCGCGGGCGACCCGCTGGCCATGCTCTACAAGATCAGCAACAGCGTGATGGAGAAACCGGCCTTCAACCAGACTCAAGCCAAGCAAGCCGAGCCCATCAACCGCTACTATCAGTACGAGAACAACGACCAGCCTATGGACCTGAGGAAGTCCaaaaacagcaacagcaacaacagcaacagcaacagcagcactggcatcaacagtaacagcagcataaATGGTAACAAACCCATAATGTCaagcctgtctctgtctgacatTTCTTCTCCTCTGAGAGAGAATGCTTTGATGGACATCTCAGACATGGTGAAGAACCTTACAGGCAGGCTGACACCCAAGTCCTCCGCCCCGTCATCCATCTCCGAGAAGTCGGACGCAGACGGCAGTGCGTTCGAGGATGCTCTGGAGGACCTCTCCCCGGTCCAGAAGAGGAAAGGGCGGCAGTCCAACTGGAACCCCCAgcacctcctcatcctccaggCTCAGTTCTGCTCTAGCCTGCGGGAGACCCCGGAGGGCCGCTACGCCATGACGGACCTCGGCCCCCAAGAGCGGGTTCACATCTGCAAGTTCACAGGCCTCTCCATGACCACCATCTCTCACTGGCTGGCCAACGTCAAGTACCAGCTCCGGCGGACTGGCGGGACCAAGTTCCTGAAGAACATGGACTCCTGCCAGCCTGTGTTCCTCTGCGGTGACTGTGCCTCGCAGTTCAGGACTGCGTCCGCCTACATCGGCCACCTGGAGTCTCACCTGGGCTTCAGCTTGAAGGACCTGTCCAAGCTGTCCAATGAGCACCTACGGGAGCAGCAGGCTGCCTCCAAGGTGATCACAGACAAAATTACTTTTGGCAGCACCCTGGCATCCCTGACCTCACCAGACGACGACACTGGCTCAGTTTACCAGTGCAGGCTTTGCAATCGGACATTCGTCAGCAAGCACGCAGTCAAACTGCACCTCAGCAAGACCCATGGCAAGTCACCAGAAGATCACCTGGTGTTCGTCACTGCTCTTGAGAAACTGGAGAAGTAGTAGAGAGGTCTGGagctgagggaagagacagataaacagacagaAAGACGGCTGTGTAACTGACCAGAATTTCATTGCACTAAGATAACATTGTTCACAGTTACTGCACTGGGCCGAACTGAGCCGCCAGAAATCAGTCTTATTTTATGTTGTGATACTGCCTGACTGGACcatgttttatttgattttcTTTTGCCAAGCTTTTTTTAACACTTATTTTGTAATGTATTTATATGCTATTTGTCTGATCTGTGCATGTATTTTAGTGAACCAAGGTTAAatacaagtttttttttaaaatcttttcATGACAAAAAAAAACTACTACTGTTTCAATGGTGACTAAAGTGGCGACCAGAAAATGAATTAGGGGGAAAAGAAAACTGTACAATACTTGATATGAAGAAGTTGAAAATTCATTGTTCACACCAAAAGAATGGACGAACCCCTTGAAAGACTGACGTAGCACCTTATAGacgttttaacattttatttgtaaagAGAACATGTTTTAAGATATTCTGCATTTTGTCCAAAATCTGTTTTAATTTGAAAGATAAATTATTTTCTTCTCTCGGTTCTTGTCACACTGCAACATCTTTGCTAAAGAATGGCCTGCTCAGAAATCTGTCAGTGTATGACAAAACGAAACAGATAATGTAAACATTCAGAGTAATTGAAATGCTGCTTCTGGTTACATATCAGTCAGTGAAAATGAATGGCCGTACAGTATGCAAGTTTgctcaaactttttttttttttatgtgaagTATCACTTATAGTAATTTTCCAATTGTATGGTTTGTTACAAGCTcctttaaaaaattaaaaaattggcGCTTTGAATTCAAGCATTTTAAAAGAACAGTCCTTTACATGTAAATGACTCACAGTGAAATGTCATACTCCATAAGACATATCTTGCCATTTGCAATAGCTCAACATTCTTTGTACTTAAAAGGTGTGTGCATTCTTTAACTTTTATATCGTCattttatataaaataaaataaaaaaaatacaaaaaatgtgtatatagatatatactgtagattcacaaaaatgtcattttttaagAAATAAGAATATAGCTTCTTTGGCTTGGTTTACAGAAATGATTTGAATTATACTTGCATCCAATTTGATGCATGATATGGTGTGAAAAAGAATTAAGCGATGCACAATGACTATACATTTCAATGTTTTATCGAtgatattgtaaaaaaaaaaaagaattattTCTAGCACCGATTAGTTTGTtttcatttagtttttttttctcaattgtAAAATAAATCTCAACGCAGTTCTTGTTAACAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162542 lncRNA upstream 8316 39813353 ~ 39813564 (+) True G141413
TU162541 lncRNA upstream 9453 39812120 ~ 39812427 (+) True G141412
TU162507 lncRNA upstream 45368 39776310 ~ 39776512 (+) True G141378
TU162506 lncRNA upstream 46164 39775494 ~ 39775716 (+) True G141377
TU162501 lncRNA upstream 49365 39772314 ~ 39772515 (+) True G141372
TU162619 lncRNA downstream 79629 39942149 ~ 39942372 (+) True G141486
TU162636 lncRNA downstream 105548 39968068 ~ 39968370 (+) True G141503
TU162640 lncRNA downstream 114119 39976639 ~ 39984542 (+) True G141507
TU162655 lncRNA downstream 141710 40004230 ~ 40007277 (+) True G141522
TU162754 lncRNA downstream 354274 40216794 ~ 40223435 (+) False LOC110489640
XM_036948220.1 mRNA upstream 55502 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 55502 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 55502 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 274517 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 291022 39527602 ~ 39530858 (+) True LOC110489581
XR_005036684.1 mRNA downstream 253438 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 253438 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 253912 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 254245 40116765 ~ 40225332 (+) False LOC110489640
XM_021562443.2 mRNA downstream 446658 40309178 ~ 40319263 (+) True galr1a
TU160072 other upstream 1770136 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1877868 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1881166 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1899810 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1676775 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2105854 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2105854 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2647810 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3868352 43730872 ~ 43731218 (+) True G146054

Expression Profile