RNA id: XM_036948253.1


Basic Information

Item Value
RNA id XM_036948253.1
length 8210
RNA type mRNA
GC content 0.52
exon number 32
gene id LOC110489640
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40115958 ~ 40292372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGGGCATTTGGCTAGAGGGTATATCTGGAGCCAAGCAGGACAACAGCCATGGGGATTCCAAGGACAACAAGTGCACTGTCTGCTCCCAGAGCTTCACCACTGAGAGCCAGCTACAGAGGCACCAGCGTGACCATGAGGCCAACGACAAGCTTCACCGGTGCGACCAGTGTGCTCAGACGTTTAACGTGGAGTTCAACCTCATGCTCCACAAGTCCACACACGCCACCTCGAACCCCACCTGCCCAGTGTGCCACAAGAAGTTCTCCCGCGTGGCCAGTCTCAAGTCCCATATCATGCTGCATGAGAAGGAGGAGAATCTGATCTGTACAGAGTGTGGCGACGAGTTCATTCTCCACAGTCAGCTCATGCTGCATCTGGAGGAGCATCGCAAAGAGCTGTCTGGGGCCAAGGTGTACACCTGCAAGACCTGCAGCAAGGAGTTCAAGATGGCGGGCCAGCTCAAGGAGCACACCAAGACCCACGTCAAGATGAGGCCACTCAGTTCGAATTCCAGAAACTACAAGAAGAATATCGATCGGAGTGGATTCACCAACAGCTGTCAGCACTGTGGCAAGACGTTTAAAAAGCCCAGCCAGCTTGTTCGACACACACGAATACACACAGgCGAGCGGCCGTACAAGTGCAGCCACTGTAGCAAGGCCTTCAACCAGAAAGTGGTGCTGCAGACCCATATGGTGAGgcacacgggagagaagcccCACCTCTGCATCTTTTGCCCCGCTTCCTTCTCGCAGAAGGGCAACCTGCACTCGCACGTCCAGAGAGTGCACTCTGAGCTTACGGGAGTGCCACTGTTCCCATGCATGGACTGTAGCTGTGTGTTCAAAAAGCTGGGCAGTCTCAATGCCCACATCAGCAAGATGCACATCTTGCTCATCGAGGAATCGGCCAACACACAGGAGGTGGAGGAGTCGGGTCAGGGAGTGGCGGGGTCAGAGGGCAGCGAGGTGGTGACTGACGTGATCCAGCAGCTCCTAGAGCTGTCAGAGCAGGTGACAGGGGAGGGGACCCAGTCACAGCCCCAAGAACAGACCATCACCTTGGAGACAGCCATCAACCAGGACATCCTACAGCAAGCCCTGGAGAACAGTGGGTTGAGCGTGGTTCAGTCCCAGACCAACGGAGTGGCCAGACAGACTCAGAGCCATGCCGCCGAGGGGGCTTTACCTGACAGTAAGAAGTTACCAGGCCAGGACAAAACCACCAAGAAGGAGAAGAAAAGTATCTTCAGAAAACCTGTACAGATGCCAGGCTCCATCAGGGAGGAGAACGGCGTGCGGTGGCACAGCTGCCCTTACTGCAACAAGGAGTTCAAGAAGCCCAGCGACCTGGTGCGCCACATCCGCATCCATACACACGAGAAGCCCTTCAAGTGCAAGCAGTGCTTTCGCGCCTTTGCCGTCAAGAGCACCCTTACTGCCCACATGAAGACGCACACAGGCATCAAGGCCTTCGAGTGCCAGTGCTGCATGAAGTGCTTCTCCACGTCGGGAAGCAGGAAAGTCCACATGCGCCTACATACAGGTGTGCGTCCGTTCCCGTGCCCTCACTGTGACAAGATCTTCCGTACATCgggccacagaaaaacacacatcGCCTCCCACTTCAAGAGCCTGCAGCAGAAGAAGCACAAGTTCCCACGCAAATCCCATAAAACCAAGGTGTCCAAGAGCAACATACCTCTGCCTGATATCCCCCTGCAAGAGCCCATACTTATCACGGACCTTGGTCTCATCCAATCCCAGAACCCTCGCCTGGCCTTTCAGACGTACCTGGAGATGGTGGACAATGATCGGCCATACAAGTGTCCCTGCTGTAACAAGGCCTATAAGAAATCCAGCCACCTCAAGCAGCACGTTAGGTCTCACACGGGAGAGAGGCCGTACAAGTGTGTCCAGTGCAGTAAGGGCTTTGCCTCCTCGGGGGTGCTGAAGGCTCACATCCGGACCCACTCGGGCCTCAAGGCCTACAAGTGCCTGATTTGTGACACCACATTCACCACCAGCGGCAGCCTGCGCCGCCATATGACCACCCACAGCGACATGCGGCCCTACATGTGCCCTTACTGCCAGAAGACCTTCAAGTCCTCACCCAACTGCAGGAAGCACATGAAGACCCACAGGTATGAGTTGGCCCAGCAGCTCCACCAACAGCTGAACCCGGAGCCCTCGACGCTGGACGACCCCATGAACGGCACCACCGTGACCCACAACCTGCAGGTGGAGCTGGAGGACGGCACCCTACAGCAGGAGGCTCCTCCCACGGTGGGCTCAGAGCAGCAGGGCATGCTGGGACTGGACCAGGCGCAGGTGGTGGACGGCGGCCAACAGGTGTCGCTGGAGACCCAGCTAAGTGACCAGCCCCTGGGACAGGAAGAGGACACCTTTGTGACTACCCAGCATGCTCTGCCTCAGAATATTAGCCACTTTGAGACGCAGACACTCCCACAGCCTGGCTTTGACCAGCAAGCACTTACTCAAGGTTTCACCATCACCGCAGAGGGCTATCCCCAGGCCCAGTTCTCTACTGTGCAGCAGCTACAGGACTCCAGCACACTGGAGTCTCAGGCCCTCTCCTCCAGCTACCACCCCCAGAACCTGCTCCATGTGCCTAGCCAAGAGACAAGTGGCCTGCTCCAGGAGACTAGCCAAGGAGACCTCCAGCTGTCTGACCAGACGCAAGACTACCAAGACCCAGAAGACAGCGAGGACAACAGCAAGAGGgcttacagGTGCACCATGTGTAATAAACCTTTTAAGAAGTCCAGCCATCTGAAGCAACACGTGCGCtcccacacaggagagaaaccctaCTGCTGCAACATTTGTGGCCGATGCTTCGTCTCAGCAGGGGTCCTCAAGTcccacctcaacacacacacagGAGTGAAGGCCTATAAGTGTAACATGTGTGACACATCCTTCACCACCAACGGCAGTCTGAACCGCCACATGGTTGTCCACCTGAAGCCCTACAAGTGTCACATGTGTGAGGAAAGCTTCCGCAACAACGTGCTGTATAGGAAGCACTTGAAGAAGGACCACGCCGAAGTGGACAGAGGGCTGGAGGATGAGGATggcgaggaggaagaggagggtgagcAGACCGTGATGAAAAGGAACCGGGCCAACATCATAACCTTCACCGAGGAGCAGGCGGAGGAGCTGGCCAAGAATGACCCTGGTGACGAGGCGTCAGTGTCGGAGAAGGTGCTGGCCCAGTCGGCGGCGGAGCGCGACCGCATCAGCGAGATCAAGGACAAGGCGGTGGAGCTGGAGACGGAGCCCAAGTTCGCCAACTGCTGTAACTTCTGCCCCAAGAGCTTCAAGAAGCCCAGCGACCTCGTCAGACATATCCGGATCCACACAGGAGAGCGTCCTTACAAGTGTGACGAGTGTGGGAAGAACTTCACCGTGAAGTCCACCCTGGACTGCCACATAAAGACCCACACAGGTCAGAAGCTGTTCAACTGTCACATGTGCAACACATCCTTTTCCACCAAAGGGAGTCTGAAAGTCCACATGCGTCTCCACACGGGCTCCAAGCCCTTCAAATGCCCCTTCTGCGAGCTCCGCTTTCGCACCTCAGGCCACCGCAAGACCCACATCCAGTGTCACTACCGGCCCAGCTCAGAGGGTCGGAAGGCCAAGCGAGCGGCATCATCCAGAAGTAACCAGAACCAGCAGCACCCGGCTAACCCAGAGACCCTCCACCCTGTGGGCCTGCTCCAGGCTACCACCACAGACCATAACATCTACCTCCCAGCCAACCAGGTCCTCGCAGGCCAGTTTGACCAGAACCTGCTGCAGCAAGGCCTGGTGGGCCAGGCTATCCTGCCTACCTCCATGTCCGCGGGTGGTGACCTGACAGTGTCTCTGTCGGAGGGTCTGGCTACTCTGGAGGGCATCCACCTCCAGCTCACCTCTGCCAACCTAGTGTGTCCCAACGTCCAGATCTCTGGCATTGACTCCagcaacatcaacaacatcacaCTGCAGATTGACCCAGCCATCCTCCAGCAGGGAGGTCTCCTCTCCCACGCCCTGACAGGAGACGGAAGCCTGACCAGCCACCCTGGTGCCCACCTCATGGCCACGGGAGACCCCTCGGCGTCCAGCTCCAATGTGGTCCTGCACCCGCTTACCAGCCTGGCTCTGCACCCCCCCGCTATCGGCCCCGGCCACGTCACCATGGGCAGCCTTGGCGAGCACGACATCACAGGTTCTCATCAGGACCTGAGCCATGTGATGAATGCTCCAGGCCTGGTGTCCAGTGGGGCTCATGGTGCTCAGGAGATCACCCTGACCATCAACAACTCCAGCCTCACCCAGGCTCTAGCTCATGTCCAGGCCCAGGCCAACGCTGCTGCTGGGGGCAACACTGCTGCAGGCAACCACCCCCAGGAGATCACACTCACCATAtcagGTCAAGACCTCCTCCAGCAGCACGGCACCCATGGTGGCGGAGAGATGATTGGCGGGATCAGGCTGGCATCCCACCAAACCACAGGTGCCACCCTCACCATTGGCAATGACCACCTTCTACCTCAGAGCAACGCGGGCATGACTGtCACCAGCCTGCCGTCTAGCACCTCCCTATCGCAGACGGCTGGCTCCCAGAGCCTGGTGATGTCATCATCGAGCATGGCCAGCGACGGCAGCGTGACTCTCACACTGGCAGACACACAGGGTATGCTGGACGCTCAACCTCAATTCACGCTCAACTTCAACGCACAGAGTCAGCAGTACCAAACTGTGCTCAGTGACCAGGATCTCTCAGGACAACATGCCGGCTCCACCCAGCAGGTCATACTGATCAGTCATCACCCCCAGGCCACTGAGGGACAACCTGACAAtgtatacaggCTATCAGAGGAGGGCCAGGCGGTGGGGAAGGAGGACCAGGGGCATAACCAGAAGCAGAACCAGTGTTTCTACTGCGATCAGGTGTGCCAGAGTGCCAACACGCTGCGACGCCACTGCAGGCAGGCCCACGGCAAGGACCGGTGCCACGTCTGCAGAGTGTGTGGCAAGGCCTTCAAAAGAGCTACTCACTTAAAGGAGCACGAGCGTGTCCACCAGCGAGGACCCTCACTGGGCTCCCAAAGGCCCAAGTTCTTCAAATGCTCCTCCTGTGATAAAGCCTTTGCCAAGCCCAGCCAACTAGAGAGACACAAccgcacacacacagGTGAGCGTCCCTTTAAGTGTTCCCAGTGTGACAAGGCCTTCAACCAAAAGAGTGCCCTACAGGTACACACGGTcaaacacacaggggagaagccctaCAAGTGTGAAATCTGCAGCATCAGCTTCACACAGAAGAGCAACATGAAGCTGCACATGAAGAGGTCGCACGGCTACGGTCTCGATCGGACCCAGGAGATGACTTTGGAGCAGGGGACAGAGACGGAAGTGGATGTCCCTCCTGAGTTGAATGACATGGAAGAGGTTGTCCAGGAGTCTTCTGGAGACTGGCACTGTGGCATTCCCAACGTCTTCCCTTAGATCCCAACTCAGAATTGAATTTACTATCCCGGTTCATCCCAGCATAGCCTCTTTACCAGGAGTCTGTGCACTGATGATACAAAGCACTGATTTTACTACTAAGTAGGTGTGGAAAAACATAGCACTcagatcaccccccccccccccaccaccaccaccaccaacagctTTTTAATTGAGTTGGACAGTTCTGCACTTTTTCTAAAGCATACCCACGGTGATGTTGCCAATCAAATACTGAAAACAGAAAGCGTGTGCGGCTGTACCTACACACATTGGCTTAGCAGCAGCTATTTCTGCCCTTTTCTATTATCCTCAGATAtgcattaaaggggcaatctgtgactgctacaaaaataacattaaaaTAAGCATTTTATAgtctcaacatggttaaaactccTTTTAATATCATGGTTGTTTAGTCctggcatccatagctctgtctcaTGAATTTGAGAATGGTTAAATTTTTCCTGCCCCCATCCCTCAGCTATTTACCAAATCAGTGGCGGATTGTCCCTTTAAAGGCAGAGAACTGGTACTTAAATTGCTGAATCAGCCTGCGCTCTGAATCTCATTAGTACGAGTCCCTTATGAGACGTTTTAGTCAATAAGCCATTTGGTAATCAAGACGCTGACCTCCCAGTACAGTTCACCGGTCGGGGCTGTAGCAAGCTGAGGTAGGCTACCGGCGGTTTGTTCCTAGACTGTTGTTTACTCTGTTTGCCAATAAGAGGAGCAAACACTATAGATCTGCATGGCTGCACTGTCAGTCCTGCGGTACTGGTTCATGTCTCCCTGTAGAGTAGTACAACCACTCACAAGCCCCATCCACAAACAGATCCTACCCTCTCTAGGCACCCCTGTAGATCCGCAGTCCATAAGTCAATCAATATAATGTCTTTTTTTAAAGCCTTTTTTTTACGTCAGCAGTAGTCAGTCACAAACTGCTTCATATTACCTATTACGGACTAGGTATAAGCAAGTGTGAGAACTTCACCTTGCCCGCTGAAAGGCTGGATGAAACGTTAGCCTTATTGCTTATTCCTATCCAATCATTTCAGATCTACACTTAGCATATAACGGGCTGGGTGCAGGGGTTGTTTCTAGACGGGGAACTCCATCTCCCCCGTGCTCCTGGGGCTGCCCACTATTAACTTTTTGACAATTGAGCTGTGCTTTAACAGGCACACACATTGGAGTGCAGTTCACCAGAAAAATACATTTCTTTTTAAAATCACATTATTTTTTTTGCATATTTCTCCTATACCCTTTTCTAAAAGGCAAGCTAAAGGTTTTGTTTTTGGTGATTTTTTTGGGCCATAAAGTTAAAGGTAGCCTTGAATGGTGAGACTATAAAGTGCTAAGGGTCATTCATAtggatcagacctgggttcaaatacgcTACTCTTTGAAATCATTCgctttagtctgcctggagtgccagatgggtgggTTTGCAGAATGCAATTTTGCACATGACTACTCTATAGGTTTCATTGTGCCTGGCAAGCTCGATCAAGCATAATGATTTTGAATAGTATTTAAACCTTGGTTTTGGTGTGGATTTGATCCCTCTCTTCTTCAATGTTATGCCTGTAATTTTGACAATGATGATGACCTGTGATACCACTGTTATTGGCTGCTGTATGAGGGCTTCAGGGGTTGACTCTCCACATTCACAATGTGTTGCATGAAATTGTAATTTAGTTGTAAGCTTATGCACAGCCATTTTGTAATCTGATATTTTATTTTGCAATGTAAATAGTGTATGAAAGATTGCATATATTTTTGGATTCCGTATCAAATTGGTTGTGAACAAGAATTCATTTTTTGTCAATTGCTGAACCAGTTTACAGACTATAAGCTGTtaagtgtttttgtttttttgtcaggAATGTATTTTGTAATGTTGAAAAGTATTTAATTAATAAAACCATTCATTTTTTTACAGATTTAATGTGTGCCAATTGTTTTAGAAATCATGTGTGAAGTTGATTGCATTTCATCTGTTTGATTTTCTGTAATACTTGAAGATCTCAGTATGTCTCTGCATCAATACCTTGTATCTAGCACATGAAAAATCTATTGTCAAAACCCATTTCTGTCCCTCAATCTTTCATTAGTCCCAGAGTTATTAAACTTTCACAGCATATGGAAAAAGCATGACTTCTTTCAACTTCTATAAATTAAAATGTCGCTTCCCCCACATTGAGGCATTATTACATTCCTTTCCTTGATTATGCAAACACAATTACTCTCGGGAACCAGGAGTGAGATGCAGCTCTGTTATGAGTCTGCTTCAAATGACCTGACCTTAATAAAGATAGTGTTGAATGTTTCATCACTTCTTGTACCTTGCATCTGTGTACACTACTTTTAAACTTCTATCAAACAACCGGAGACCCATAACGGTTTTATGATTTTTAaatgctttatttattttttctaggTAAGTGGCTGGTCGtacatcatttttttttattacagatACAACAATGAGGGTCTCAAGAGTTTAATTTACATTCATTCACAGGACCCATACAAAAATGCGCGCACACTTTAAGACATGGGGGAGGGGCGACGGGGGCAGGCAGAGTAATGCTACAGATGACACGTTTGTTTTTAAACAAATTGAGGAAAGACactggtgtggggggggggggtattggacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162655 lncRNA upstream 109155 40004230 ~ 40007277 (+) True G141522
TU162640 lncRNA upstream 131890 39976639 ~ 39984542 (+) True G141507
TU162636 lncRNA upstream 148062 39968068 ~ 39968370 (+) True G141503
TU162619 lncRNA upstream 174060 39942149 ~ 39942372 (+) True G141486
TU162570 lncRNA upstream 267084 39849073 ~ 39849348 (+) True G141438
TU162760 lncRNA downstream 11175 40236507 ~ 40294116 (+) True G141613
TU162960 lncRNA downstream 180162 40405494 ~ 40406246 (+) True G141799
TU163380 lncRNA downstream 207016 40432348 ~ 40432598 (+) True G142202
TU163382 lncRNA downstream 208197 40433529 ~ 40433864 (+) True G142204
TU163490 lncRNA downstream 280390 40505722 ~ 40505961 (+) True G142312
XM_021562345.2 mRNA upstream 253912 39821880 ~ 39862520 (+) True LOC110489609
XM_036948220.1 mRNA upstream 350054 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 350054 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 350054 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 569069 39540706 ~ 39547363 (+) True LOC110489590
XM_021562443.2 mRNA downstream 83846 40309178 ~ 40319263 (+) True galr1a
XM_021562456.2 mRNA downstream 410767 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 555694 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 558029 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 655842 40881174 ~ 40885140 (+) True LOC110489783
TU160072 other upstream 2064688 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2172420 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2175718 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2194362 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1313963 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1743042 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1743042 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2284998 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3505540 43730872 ~ 43731218 (+) True G146054

Expression Profile