RNA id: TU162754


Basic Information

Item Value
RNA id TU162754
length 1257
lncRNA type sense_over
GC content 0.49
exon number 3
gene id LOC110489640
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40115958 ~ 40292372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGACCTCTGACCTCTTTCTCCTACAGGAGCACGAGCGTGTCCACCAGCGAGGACCCTCACTGGGCTCCCAAAGGCCCAAGTTCTTCAAATGCTCCTCCTGTGATAAAGCCTTTGCCAAGCCCAGCCAACTAGAGAGACACAAccgcacacacacagGTGAGCGTCCCTTTAAGTGTTCCCAGTGTGACAAGGCCTTCAACCAAAAGAGTGCCCTACAGGTACACACGGTcaaacacacaggggagaagccctaCAAGTGTGAAATCTGCAGCATCAGCTTCACACAGAAGAGCAACATGAAGCTGCACATGAAGAGGTCGCACGGCTACGGTCTCGATCGGACCCAGGAGATGACTTTGGAGCAGGGGACAGAGACGGAAGTGGATGTCCCTCCTGAGTTGAATGACATGGAAGAGGTTGTCCAGGAGTCTTCTGGAGACTGGCACTGTGGCATTCCCAACGTCTTCCCTTAGATCCCAACTCAGAATTGAATTTACTATCCCGGTTCATCCCAGCATAGCCTCTTTACCAGGAGTCTGTGCACTGATGATACAAAGCACTGATTTTACTACTAAGTAGGTGTGGAAAAACATAGCACTcagatcaccccccccccccccaccaccaccaccaccaacagctTTTTAATTGAGTTGGACAGTTCTGCACTTTTTCTAAAGCATACCCACGGTGATGTTGCCAATCAAATACTGAAAACAGAAAGCGTGTGCGGCTGTACCTACACACATTGGCTTAGCAGCAGCTATTTCTGCCCTTTTCTATTATCCTCAGATAtgcattaaaggggcaatctgtgactgctacaaaaataacattaaaaTAAGCATTTTATAgtctcaacatggttaaaactccTTTTAATATCATGGTTGTTTAGTCctggcatccatagctctgtctcaTGAATTTGAGAATGGTTAAATTTTTCCTGCCCCCATCCCTCAGCTATTTACCAAATCAGTGGCGGATTGTCCCTTTAAAGGCAGAGAACTGGTACTTAAATTGCTGAATCAGCCTGCGCTCTGAATCTCATTAGTACGAGTCCCTTATGAGACGTTTTAGTCAATAAGCCATTTGGTAATCAAGACGCTGACCTCCCAGTACAGTTCACCGGTCGGGGCTGTAGCAAGCTGAGGTAGGCTACCGGCGGTTTGTTCCTAGACTGTTGTTTACTCTGTTTGCCAATAAGAGGAGCAAACACTATAGATCTGCATGGCTGCACTGTCAGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162655 lncRNA upstream 209517 40004230 ~ 40007277 (+) True G141522
TU162640 lncRNA upstream 232252 39976639 ~ 39984542 (+) True G141507
TU162636 lncRNA upstream 248424 39968068 ~ 39968370 (+) True G141503
TU162619 lncRNA upstream 274422 39942149 ~ 39942372 (+) True G141486
TU162561 lncRNA upstream 301742 39833539 ~ 39915052 (+) True G141429
TU162744 lncRNA downstream 1638 40225073 ~ 40241388 (+) False LOC110489640
TU162746 lncRNA downstream 1638 40225073 ~ 40248848 (+) False LOC110489640
TU162747 lncRNA downstream 1638 40225073 ~ 40275255 (+) False LOC110489640
TU162748 lncRNA downstream 1638 40225073 ~ 40292372 (+) False LOC110489640
TU162750 lncRNA downstream 1638 40225073 ~ 40247154 (+) False LOC110489640
XM_021562345.2 mRNA upstream 354274 39821880 ~ 39862520 (+) True LOC110489609
XM_036948220.1 mRNA upstream 450416 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 450416 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 450416 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 669431 39540706 ~ 39547363 (+) True LOC110489590
XM_021562443.2 mRNA downstream 85743 40309178 ~ 40319263 (+) True galr1a
XM_021562456.2 mRNA downstream 412664 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 557591 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 559926 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 657739 40881174 ~ 40885140 (+) True LOC110489783
TU160072 other upstream 2165050 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2272782 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2276080 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2294724 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1315860 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1744939 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1744939 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2286895 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3507437 43730872 ~ 43731218 (+) True G146054

Expression Profile