RNA id: TU162746


Basic Information

Item Value
RNA id TU162746
length 1862
lncRNA type read_through
GC content 0.46
exon number 4
gene id LOC110489640
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40115958 ~ 40292372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATGATTTTTAaatgctttatttattttttctaggTAAGTGGCTGGTCGtacatcatttttttttattacagatACAACAATGAGGGTCTCAAGAGTTTAATTTACATTCATTCACAGGACCCATACAAAAATGCGCGCACACTTTAAGACATGGGGGAGGGGCGACGGGGGCAGGCAGAGTAATGCTACAGATGACACGTTTGTTTTTAAACAAATTGAGGAAAGACactggtgtggggggggggggtattggacAGTAATAAGCAGTTTATGCAACTCGTCGCTCGTGCCTTGGTCGACAAACTCCACGTCCTCTATatccatcttttttttttaataacgTTTATGCTTTTACACGGTTAAATAACGAGCACCTTTATGACAGTGTTGGTCTTTTAATATCCACACAGAGTAAACACACCACATTGTTTTTGGCAGTCAGAAATGGCATTGCTTAGCTAGCTGTTTTTGTATTCATATTGTGTGCAGTGCTTTGATAGATATATAAAGCAAGAGATACTGAAGACTACAGAATCTAGTCTACACTAATGGGGGAAGGGTCTGAATCTGTCCCCCCGTTGGAAATGCCATGCTTGTAGCAGGTCCAGCGTGAGCTTGGTTTCAGAGCAGTCAGTGTCTGGCTTTTCAACGGTCAAAACAGTGCACTTTAGACGAATCCCAGTTGTGTCTGGATGGGGAAACTCCCATTAGTGTCATAATCAATCTACATGTACTGGAAATCAAATGAAAACAACATTAGAAATGATTGACGTCTACAATTCAGTGGATACTACAGACAAGAGACTTTTAGTAGGTTAACAGCTTTCAGTAGCTCGATGTCATTTTACCACCGAAGATCACAGCAAGCCCTAATGTAAAAACATGGAAAGACAGCAACACTTAAGACAGGACACTTACACTGATGATACAGGAGGGGAGACATACAAACACATGACCAACTGAGTAAGACGATGCTTAGCTATGAATTCATGTCAGGGTGTACAGAAATGGGAGAGTGTGTGGggtttgggggtgggggtgggggtgggcaaAGACGAGCATGACAAGACAGATAATCACTCGTTTctgaaccagaaccagacctggTCATACTTTCACAACCACAAGCGGTCAGGGCCAGGTCAATTGGACCTAAGCTACTTCAGCCAGGTCTGGTCCAGTTAGCCAGCCTTGTTAAACgactatacagacagacagagaaatataaaTGAAGACACAGATACTGTAAAGCTATGACAGGGGTCCTTTAGGCTGTAAGAGGGGGTCCGGATGACTTCAGCAACAGTTCACATCCAAGATGGTTGCACAGGAGGGTGGAGCAGGGTGCGGGGTGGGGGGGAGGCACAGATTGTGTCGCTATATCTACCAGCCGGGTGCGGTGGGGGAGGCATTTGAGTTATAAAATGAAAGTGTTAGAAAAGCAGGGAGAAGAGGCGTACAACAGCGTTCTCCCCTCCCTTAGGGGCTGCCTTGGCAGGTCtggcaggagaggaggacaggccaCGGAAGGAACCCTGCTCTTCCTCTTCTTGTCCCCTCCAAAGAAGTTCCCAATTTGATCCATAAGGCCAGGGGCCTTCTTTTTCCTTCCCAGGCTAGACAGTCCAGAGGAGCTTGCAGTTGCCATGTCAGTGGTTTGGGTTGGGTAGTGCAGCTAGTATCTCTGTAAGTGGGGTTCTGTCTCTCAGGTAAGAGCGAAGGGGGTattaagagagagaaaggagagcaaAGAAACAAACTTAGTCTAGATCCTGATCCTCTGAACCGCACTCTGATCCCGCTCCGCTGTGCTCTTGGATGgtctggggaacgggcgggccagtccatagcatcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162754 lncRNA upstream 1638 40216794 ~ 40223435 (+) False LOC110489640
TU162655 lncRNA upstream 217796 40004230 ~ 40007277 (+) True G141522
TU162640 lncRNA upstream 240531 39976639 ~ 39984542 (+) True G141507
TU162636 lncRNA upstream 256703 39968068 ~ 39968370 (+) True G141503
TU162619 lncRNA upstream 282701 39942149 ~ 39942372 (+) True G141486
TU162960 lncRNA downstream 156646 40405494 ~ 40406246 (+) True G141799
TU163380 lncRNA downstream 183500 40432348 ~ 40432598 (+) True G142202
TU163382 lncRNA downstream 184681 40433529 ~ 40433864 (+) True G142204
TU163490 lncRNA downstream 256874 40505722 ~ 40505961 (+) True G142312
TU163492 lncRNA downstream 257171 40506019 ~ 40506222 (+) True G142314
XR_005036684.1 mRNA upstream 2431 40115958 ~ 40222642 (+) False LOC110489640
XM_021562345.2 mRNA upstream 362553 39821880 ~ 39862520 (+) True LOC110489609
XM_036948220.1 mRNA upstream 458695 39569485 ~ 39766378 (+) False znf407
XM_021562443.2 mRNA downstream 60330 40309178 ~ 40319263 (+) True galr1a
XM_021562456.2 mRNA downstream 387251 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 532178 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 534513 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 632326 40881174 ~ 40885140 (+) True LOC110489783
TU160072 other upstream 2173329 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2281061 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2284359 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2303003 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1290447 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1719526 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1719526 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2261482 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3482024 43730872 ~ 43731218 (+) True G146054

Expression Profile