RNA id: XR_005036688.1


Basic Information

Item Value
RNA id XR_005036688.1
length 2218
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110489653
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40224622 ~ 40298333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGCATCAACATTCCGCCCCACCCCGAAGAAACAACCATCACTGTACGTAAAACAGGAAGCAAACGAGCCGTACATGTTTACGAAGAAGGTGAAAACAACGCCGAACCGTGGAAGATAAAACGTTATGGTCCACGAAAAGAGAAACGTCACATCAAAATCACAGCCTCTTATGGTGGATGCATTTGATTCGATCTAAACGGAGAAGGTCTCTGTTGACAACATGGGACAGCATCTAGGTAAACACGAGCCACAGCCGCAGAGCAAGCCTTTGTCCGCAGAAGCAGAACAGACCATAGAACCAGCACCCATTGGTGAGACCATGGCAGAAGCCGAATCACAAGACGAGGTCTTTGGCCTGGATGAGGCAGATGTGAACCCGAACAATGGCTGCCCCTCTGAGAAGGCGGCGGCGGTGACTGACTCCACGGGCACTGAGGGGCCCAGCAGCTCCTGGAACGAGACCAGCACAGCTGATGCTGACGATAGTGCCGTGCCACGCCCCCACCTGGTCCGCCTCTTCTCCCGAGATGCCCCGGGCCGCGAGGACAACACCTTCAAAGACCGCCCTTCTGAATCAGATGAGCTACAGACCATCCAAGAGCACAGCGGAGCGGGATCAGAGTGCGGTTCAGAGGATCAGGATCTAGACTAAGTTTGTTTCTttgctctcctttctctctcttaatACCCCCTTCGCTCTTACCTGAGAGACAGAACCCCACTTACAGAGATACTAGCTGCACTACCCAACCCAAACCACTGACATGGCAACTGCAAGCTCCTCTGGACTGTCTAGCCTGGGAAGGAAAAAGAAGGCCCCTGGCCTTATGGATCAAATTGGGAACTTCTTTGGAGGGGACAAGAAGAGGAAGAGCAagGGTTCCTTCCGtggcctgtcctcctctcctgccaGACCTGCCAAGGCAGCCCCTAAGGGAGGGGAGAACGCTGTTGTACGCCTCTTCAGAACGATCGTGTCCCCTGCCCCTCCTAAGTCTAGGAAGTCAACAGGATCCGCTAAGGCAAAGAAGGCCGGTGCAGGAGACAGCGGAACCCTGTCCAAGATCTTCAAAATGGGCACAAGCCGGACTGGGTCTCTACCCAAAAAATGAGGTCCCCTTTCAAGAGCACAAAGGCAGATGTCAAGAAAAGGGACGCAAGTGGGGGGAAACAAAGAAGATACAAGAACAGATCTTTGTCGACTCACACACCTCTTCTCCCTGCTTTTCTAACACTTTCATTTTATAACTCAAATGCCTCCCCCACCGCACCCGGCTGGTAGATATAGCGACACAATCTGTGCCTCCCCCCCACCCCGCACCCTGCTCCACCCTCCTGTGCAACCATCTTGGATGTGAACTGTTGCTGAAGTCATCCGGACCCCCTCTTACAGCCTAAAGGACCCCTGTCATAGCTTTACAGTATCTGTGTCTTCAtttatatttctctgtctgtctgtatagtcGTTTAACAAGGCTGGCTAACTGGACCAGACCTGGCTGAAGTAGCTTAGGTCCAATTGACCTGGCCCTGACCGCTTGTGGTTGTGAAAGTATGAccaggtctggttctggttcagAAACGAGTGATTATCTGTCTTGTCATGCTCGTCTttgcccacccccacccccacccccaaaccCCACACACTCTCCCATTTCTGTACACCCTGACATGAATTCATAGCTAAGCATCGTCTTACTCAGTTGGTCATGTGTTTGTATGTCTCCCCTCCTGTATCATCAGTGTAAGTGTCCTGTCTTAAGTGTTGCTGTCTTTCCATGTTTTTACATTAGGGCTTGCTGTGATCTTCGGTGGTAAAATGACATCGAGCTACTGAAAGCTGTTAACCTACTAAAAGTCTCTTGTCTGTAGTATCCACTGAATTGTAGACGTCAATCATTTCTAATGTTGTTTTCATTTGATTTCCAGTACATGTAGATTGATTATGACACTAATGGGAGTTTCCCCATCCAGACACAACTGGGATTCGTCTAAAGTGCACTGTTTTGACCGTTGAAAAGCCAGACACTGACTGCTCTGAAACCAAGCTCACGCTGGACCTGCTACAAGCATGGCATTTCCAACGGGGGGACAGATTCAGACCCTTCCCCCATTAGTGTAGACTAGATTCTGTAGTCTTCAGTATCTCTTGCTTTATATATCTATCAAAGCACTGCACACAATATGAATACAAAAACAGCTAGCTAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163244 lncRNA downstream 8908 40216404 ~ 40216619 (-) True G142070
TU163243 lncRNA downstream 9205 40216066 ~ 40216322 (-) True G142069
TU163091 lncRNA downstream 211913 40008380 ~ 40013614 (-) True G141925
TU163089 lncRNA downstream 212219 40008380 ~ 40013308 (-) False G141925
TU163076 lncRNA downstream 234773 39990449 ~ 39990754 (-) True G141913
TU163513 lncRNA upstream 225713 40524046 ~ 40524255 (-) True G142334
TU163643 lncRNA upstream 231374 40529707 ~ 40633685 (-) True G142462
TU163705 lncRNA upstream 330576 40628909 ~ 40709425 (-) True G142523
TU163764 lncRNA upstream 403730 40702063 ~ 40715305 (-) True G142568
TU163785 lncRNA upstream 424811 40723144 ~ 40723382 (-) True G142589
XM_036948238.1 mRNA downstream 146528 40003770 ~ 40078999 (-) True LOC110489634
LOC110489623 mRNA downstream 403682 39814123 ~ 39821845 (-) True LOC110489623
XM_021562336.2 mRNA downstream 670094 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 724039 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 727966 39487555 ~ 39497561 (-) True LOC110501545
XM_021562506.2 mRNA upstream 555882 40854215 ~ 40859593 (-) False LOC110489712
XM_036948344.1 mRNA upstream 555882 40854215 ~ 40859666 (-) False LOC110489712
XM_021562497.2 mRNA upstream 555882 40854215 ~ 40861194 (-) True LOC110489712
XM_036948417.1 mRNA upstream 569556 40867889 ~ 40907134 (-) False LOC110489774
XM_036948420.1 mRNA upstream 569556 40867889 ~ 40907134 (-) False LOC110489774
TU162491 other downstream 460054 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 460104 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 460357 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 460357 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 1161109 39063862 ~ 39064418 (-) True G140879
TU164135 other upstream 564881 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1416213 41714546 ~ 41730422 (-) True LOC110489860
TU166468 other upstream 2408485 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 2972384 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 3074507 43372840 ~ 43392129 (-) True LOC110490183

Expression Profile