RNA id: XM_021562443.2



Basic Information


Item Value
RNA id XM_021562443.2
length 2920
RNA type mRNA
GC content 0.41
exon number 3
gene id galr1a
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40309178 ~ 40319263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGACTGAGGACGCATCAGGTGGAGACAACAACTGCATTACGCACCAAGAATATATAGAACAGTACACTCTGGGCAGCTAACTTCAAACATATTGACAAAATGTCTCATAAAAAGTATCTTCACTTACATTGTATCGAAAAACAATGAGGAACATTGCAACGAATTGAGATACAATATTGTGTGATGGCTGCATTCAAGAGACTCAAGAGACTTTGAAACAAATTATACTTTAATTATCTGAATAGGCAAAAACGCCTGCCAGCTAGTGTCAAACGCCCCTGGAAGACATAAGAAGGCATTTGTGCCCCCTTCACTTACATTTGAAAATATTTCAGCACTAGAAAAAGTGATGAACTCGTCAGGTTTGGACAACCTAACCGAATTTGCACCATGGTATGTCAACAGAACGGATGTCGAGGAGGAAAATCCGAAACTTTTGTTCGGGATTGGCATGGACAACTTCATTACGCTTTTGGTTTTCGGACTCATCTTTACACTTGGAGTGTTGGGAAACTCCATGGTTATCACGGTGCTAGCCCATAGAAAACCCGGAAAACCACGGAGCACCACCAACATATTCATCCTCAACCTTAGCATCGCCGACCTGTCCTACCTGCTTTTCTGCATCCCCTTTCAGTCAACTATTTACATGATGCCGACATGGGTTCTAGGTGCCTTCATCTGCAAGTTTATTCATTATTTCTTCACCGTTTCTATGCTGGTCAGTATTTTCACCTTGTCCGCAATGTCGGTGGACCGCTACATTGCCATTGTTCACTCCAGAAAATCGTCCTCCATCCGTGTGTCAAAGCACGCTTTGATCGGAGTGGTGGTCATTTGGATACTCTCTTTGGCCATGGCAGCGCCAGTCGCGGTCATACACAACATATACCAGAGAGACGAGAATCACACCTATTGCTGGGAAGTGTGGCCGGATCAAAACCAAAAGAAAGTCTATGTTGTTTGCACGTTTGTTTTTGGTTATGTATTGCCCCTGTTGCTGATTTCGTTCTGCTACGCAAAGGTTTTAAATCACCTGCACAAAAAACTCAGAAACATGTCCAAAAAGTCAGAGGCGTCGAAAAAAAAGACTGCCCAGACGGTtcttgtagtggtggtggtgttctgCCTGTCATGGCTCCCTCACCATGTGGTCCACCTGTGGGTGGAGTTTGGCAACTTCCCCTTGACCCAGTGGTCCTTCTTGTTCCGGGTGGCGGCCCACTGCCTGGCCTATAGCAACTCCTCCGTCAACCCTGTCATCTATGCCTTCCTCTCGGAGAACTTCAGAAAGGCCTACAAGCAGGTGTTCAGGTGTCAGATTACCAACTCCCCTCTCAACGAACTCAAGGAGTTCCGCAGCAAGGTGGACAACACACCACCCTCCACCAACTGCACCAACGTCTGATTGGAGGACACCGGGTGCCAGCTCAACTACGGCCATGATGATTGGTTGTTTTCAAGGGGCCTTCTGAGACATATAATGCTATGAGATTCCATGTTTCGATTCAGAGATTGTATGAAGACAATATGAAGAAAACTGGATATGCACTCAAGGTCCACATAGGTCCACATCAGCGCTGTTCCATCATCAGAATGACGCCACACCAGACGATGTGCCATACTGGACATACGATCATATGTGTAGTGAGcatctctcttcctttccctttctctcttgctccctctctctccctctatcttgctttctctctcgttctctctgtcatTATCACAGGAAGATTGCTGAGTCTGACTCTCAGGAATGGAAAGAATGTGGACTTTGATATTTCACTGACCCTCTTCTTATAAATCAAAACTGTGAATGTTTGGTAATTTGCCTTCTTATATGTGCAGATATTTTGTGCATGTGCATATTGTTGGTCCTTCTTAACGCTCTATTTAGGCTGTCTGAAGTAGCTATTGAAATGAGCGTCTATAATATAGCTTCACTACACATTAAAGCCTGAGGTTACTGCTGTATATTGTACATAGTATCCTATCATGGAGTagttttgaattgttaaaaaaataTTAGCTATTGCTCTATTAGATATTGCTCAGAATATAAAAAATGCACACAGTGTAATTTTCTCTTTAAAGTTGAATATTTTTTGAAGAGAAAGCATTTTGTTGTTTGATTGTAATGGCCAATTCTCTTGTTGCGAGTTGCCAATATGTATACAAGGGACATGTTGTCCGTATAACTTAAACCTGTCTTGCCATCTGTAATACAGAGTTTTCAATGGAGAAAAAAACACATGTTGGGACTTTTAATAATACTATTGTATAAACTATTTAAAAATACTATAATGTGTAGTCAATATAAGCCTACTTTATCTTATTTATTAAATTGGTGTATGATATGGAAAGCTTAAGTCCATGTTTTCTGGCGTATTGTTTTGTGATGACTTTGGCTTGTACATTACAACttgtacaggtacagtatgtgGTTTTATCTTAGTGCTAGATCACTGAGCAACCTTGCTTCAAAGGCATTGTGTGGGATCTCGTTACCCTTTGACTTCCATTTCCCCTCATCATTACAGAGTAAACGAAAGAAAAATCTTCAAAGATCAGAGACTGACAAGATTTTGTTTGTCGCTTACAATCAGAAGTAAAGAGAAAAAAACATAACTATTCTCCCAAAAGTACATCCTGCCCCTTTTCACAGCTAATACCACATCCATGTTTGATAGTTTAGTATATGTGAGAGAGATTTGAAAAAGTCACTTCTCATTTTATGTGTCGAAAGCTAGCTAATACTctttaaatatttaaatattttgtttgGTTAACATAATCCAATCAGGGATTGTCTactctatcaatcaatcaatcaaatgtatttataaagccctttttacatcagccgatgtcacaaagtactgtacagaaactcagcattaaaccccaaac

Function


GO:

id name namespace
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004966 galanin receptor activity molecular_function

KEGG:

id description
K04230 GALR1; galanin receptor 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162760 lncRNA upstream 15062 40236507 ~ 40294116 (+) True G141613
TU162748 lncRNA upstream 16806 40225073 ~ 40292372 (+) False LOC110489640
TU162747 lncRNA upstream 33923 40225073 ~ 40275255 (+) False LOC110489640
TU162746 lncRNA upstream 60330 40225073 ~ 40248848 (+) False LOC110489640
TU162750 lncRNA upstream 62024 40225073 ~ 40247154 (+) False LOC110489640
TU162960 lncRNA downstream 86231 40405494 ~ 40406246 (+) True G141799
TU163380 lncRNA downstream 113085 40432348 ~ 40432598 (+) True G142202
TU163382 lncRNA downstream 114266 40433529 ~ 40433864 (+) True G142204
TU163490 lncRNA downstream 186459 40505722 ~ 40505961 (+) True G142312
TU163492 lncRNA downstream 186756 40506019 ~ 40506222 (+) True G142314
XM_036948247.1 mRNA upstream 83846 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 83846 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 83846 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 86536 40115958 ~ 40222642 (+) False LOC110489640
XM_021562345.2 mRNA upstream 446658 39821880 ~ 39862520 (+) True LOC110489609
XM_021562456.2 mRNA downstream 316836 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 461763 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 464098 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 561911 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 975418 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2257434 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2365166 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2368464 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2387108 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1220032 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1649111 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1649111 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2191067 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3411609 43730872 ~ 43731218 (+) True G146054

Expression Profile