RNA id: XM_036948320.1


Basic Information

Item Value
RNA id XM_036948320.1
length 4923
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110489695
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40781026 ~ 40847759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACAGGAGGTGTTTTCCAGCTTTAAAAGGGATGGAGCCAGCCCCTTCTGACATGCCCTGTGTCACAGCTACCAGGAGTCTCAGGAAATCTTAATTAGGCTAAAGCATAACAAAACGACAGCAAAACTCATCTAACCATCAGACCAACCCCGAGTGTGTGAGAAGTGCTATGAAGATAACCCTTTCGCATACTCTACTCTCTTTTCCATCTCAGTTTCTCTTGGAGTGCTGTCACGTAGATGAAAGTGTTTGAATTAATCTCAAATCAGCATTCGAGTTTACTTTTTTATTGACAAATAAtgcgtttatttttgttttgattAATGCACATTTCTACAGCCTGAAATCGTTTTTTTTTCTCGCAGTTCTCATATGATACTGCCTGTGATATTATTGTCAACCGTCACCACCACAAAAGTAGACCAATCGCAAGTTGAATGCAGGATATCAGCTGTTTGAGATTCAGCTCCAAATTCAACTTTGGACCAGTCCTCCCAGCGGCTTTGGGAAAGGAACGAGGATTGCAGTTTCTCAACTCTCTCGCTACCGAGATGAAGTCTGCAGAAGAAGATGCATATAGCTACACTCCAAACGTCAGCCTGTCCCTGCCACTGGGCATGGGAAATCCCTGTCTGGCCACCCAGTACCACACACTGCAGTCCAGCCCCATTATCTCCGTGTCCTCCTGCCACCAGACAGGCTACGGTCTCCACGATCACAACAACCACAACCCAGCCCAGGGCTACTACATGTCCCACGGCCTGAGGCCTAACGGGGCCCCGGCCCTGGAGAGTCCTCGCATCGAGATCACAGCGTACCACCAGTACcctgaggaggaggtggaggagagcagCAGCATGGACCACATCGTCCACCACAAGCGGGGGGTCAACTCCATTGTGACCCTGACGCTACCAAACGGCGATGGCTACCGCGACCCCAGTTGCCTCAGCCCGGCCAGCAGCGTGTCATCACGTAGCTGCAACTCGGATGCGTCGTCCTACGAGTCTGGCTTTTACAACTATGACAACTCATCCCAGAACTCGCCATGGCAGTCTCCTTGTGTCTCTCCGAAAGgctcgtcctctctcctctcctgcccacACGCTCCTCTCGGCCCCCCCTCAACCTCCCCACGCCACTCGCCATCCACCTCCCCCCTGATCGGGGCTCAAGCTGAAGAGGGCTGGGTGGGACAGGCCTCCTGTGGAAGCTCCAGGCCCAACTCCCCGGCTTGCAGCGGAGGAGGTGGCAGTGTTGGCGTGGGGAAGAGAAAATACAGCTTCAACGGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACGCCTTCCCCGCGCGGTTCGCCCAGGGTCAGTGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCAGCCATCAACGCCCTCACCACCGACGGACTGGTCGACATGGGCGAGGGTGTCCCCGTCAAGGCCCGCAAGACCAACCTAGACCACAGCCCCACCATGAGCCTGAAGACGGAgccgggaggagaggagatgggccTTGGGAGCGAGCTCCTCCAGGAGGACTACATCTCCCGCCTGCCTTTCAAGAAGGAGAGCTACTGTGGGGGCTTCCTAGACGTGCCCCAGCACCCCTACTCCTGGTCCAAGCCAAAGCCCTACCTCAGCTCCCTGCCCGCCCTGGATTGGCAGCTGCCATCTTGCTCTGGCCCGTACAGTCTGCAGATCGAGGTGCAGCCCAAGTCCCACCACCGTGCCCACTACGAGACAGAGGGCAGCCGCGGGGCAGTCAAAGCTCCGTCCGGAGGTCATCCAGTCGTACAGCTTTACGGTTACATGGAGAGCGAGCCCCTTACCCTGCAGCTGTTCATCGGGACCGCAGACGACCGCCTCCTGCGACCGCACGCCTTCTACCAGGTCCACCGCATCACGGGCAAGACTGTCTCTACCGCCAGCCACGAGGCCCTGCAGTCCAACACCAAGGTGCTGGAGATCCCTCTGCTGCCCGAGAACAACATGAGAGCCATCATTGACTGTGCAGGGATTCTGAAGCTGCGGAACTCCGACATCGAGCTGCGCAAGGGCGAGACGGACATCGGGCGCAAAAACACACGCGTGAGGATGGTGTTCCGTGTGCACATCAACCAGCCCAATGGCAGGACCATCTCCCTACAGGCCTCCTCCAACCCCATCGAGTGCTCCCAGCGCTCGGCCCAGGAGCTTCCCCTGATTGAGAAGCAGAGCCTGGACAGCTACCCCGCCACGGGGGGAAAGAAGATCCTCCTGAGTGGACACAACTTTCTGCCAGACTCCAAGGTGGTGTTCGTGGAGAAGGCCCAAGATGGACACCACCTATGGGAGACAGAAGCCAAAGTTGACAAGGACTCCTTCAAGTCTACCGCGCTGGTGGTGGAGATCCCCCCCTACAGGAACCAGAGGATATCCAGCCCAGTGCAGGTCAACTTCTACGTCTGCAATGGCAAGAGAAAGAGGAGCCAGTACCAGCGCTTCACCTATCTCTCACCAAATGTCCCGATAATAAAGTCAGAACCGAATGATGAGTATGAGCCTCTGGGGGCTCAGGGGCTGTCTGTTCATTCCAAGCTCTACTATGGCCAACCCAGGCTCACTCCTATCATACCTGTGGGGGACGCTGACACATGCCTGGTCGGGGTTTATTCTCCCTGCCCGCCTTGCCATGGCAGCATTGGCAGCatgcccccctcctcccccaggtcCAGCCCAACACTGCACGACCTGTCCCCCGTGTCTTACCCCAAGTGCCTCTCCACCAGCCCTACGCACGCCCACAATGGCCCCTTGGCGTCCGCCATCCAAGAGACGCCAGGGCTGCGCCCAGCGCCGCTGGTCTGCCCTTCCTCACCCGACCAAGCTCCACTGGGCATGCTTCACTCCCAGGGCAACAGCCCGCATCACCTTGGTAACCCCAGTCCCCATGGCTTCCACCCGCTCTACCACAGCAGCAGCCCCTCCACCTCCCCAGGGTCCCACCCCTCCACTCCAGAGGGGGCAGCAGAGAGCGCGTTCGCCCAGGCACCAGATTACAGCCCCACCCAGGGACAGAGCCAGACTCAGGCCAGGAGCAGCCCTCCCAGCCTGCTGCCGGTGGACGCCAGCCCCCGCGACCTAGCCGTCACTGTCAAGCGGGAACCCCAGGATCTGGACCAGATGTACCTGGACGATGTCAATGAGATCATCCGAAACGACCTGTCCAGCATCTCAGTGCATCTCAGTACATAAACTCTCTGCAGATACAAAAAGGCACAGAGGCAAAGGAACCACAAACCAAAGCTCCTATATCCACATGAGGAACCCCTTAACAGAGAGCTTTCACATTACCACTTCCTCATTGCTACATTTCCCAGATGCCTGATTCGCTTGCCCCTCGTGACGCTGCAGAACGATTGGTCGACTGGTGGTCATTGACAGGAAACTGCAAAGCTCCATATGAACGAATGTTATAATATAATGTGAGACGGCCTTTGATATAATGGGAGGGACTGTGACAATTACTACACTTGCCTTAAATGACAACTCTTGCTCTTCCATGGACCAAACAGCTCAGTAAGACTGAATTACGTGTTTCTTTACTGATTGCCTCTTCATTATGTGTGTTGGACTCTAATATACGGACAAGCCAATGGGTGTGTCATATGTTGGTCAGAGCGTCCTGGCAAACCACAGCAACCCAGGCGGTGCCTTACAACATCACTCACTGACTAGAATGCAGTGTCACTTCGATCACGTCAATCATTTGTTTACAGGGAAACTAAAAATAGCTGGGAAATAAGAATGGGACGTGTATAGGTTAGTTTTGTgtatcagttttttattttttattatgtcCTTGTCCATTTATACCGAATGTTGTGTATGATATTCTTTGTATAAACATGTATTTGAAATGTACTTTGTGTATGCCTTAAATCTATTATGCAGTTTCGCCGTTTAGCTCCtcgttgttttgtttttttcagcGTCTTCCTTTTTCTGAAGATCCGATGTGTACCACCTCGTTGCTAGCGTCTGTCTTGACACCTAGTGCCTCTTCTATCCTTCCGCTCTGGcctacctctccctcttccctttaaaaaataaataaaaaatattcagaACTGCTTAGACCATCAGGAGAGAGCCTCCTACACATATCGAAGGAGAACAACTGGGTTGGCATGTACATACCATAGGATGATAAGGACAATCTAAGACTTCATCTTTATTCCCCTTGCCTGTATAATACAGCTGGAGAAGGGTTGGGCCTTCAGCCTTCAGCTTGGCAATAATTGGTTTCCTCATATCAAAGGATTTCTTACCTACTTATTGTTCGAGCTTCTTCTTTCTTTACTGTTAGAGACAGTGGCTCAGTAGGCTTCAGTCAGTATGTAATCTACTTTACCATAGTAGCAGCACGGCTTTCTCTTCCGTCACGACCAAATGTTATAGGATCTAGATTCACATGCTTAGTATGATAGGACAGACAGCCCTTACTGAGCCACGGGGTCTCTTCTTATAAAGGATGACAGATCCGCCATCGTTTTCTACGTCGTCTAGTGCAATGTCTTTCTTCAGCATGCAGAGAACACTAATGAGATATATGATTTAGCTTTACAATACCATTAAGTGGCTTCACGAATACATGTGGACCATATGATAGCATGGCTCTATGTAACAGATTGACGTATTGTGCCTTATTCGCTATTGTCTCTCTGCTACAACATGATTGTAACTCTTACTCATTTTCTATCCAGGCACAAAGGTGAAACATATTTCCTCCCTAATATGAAATATTTATGGAAATTGAAATGGTGTTTTATGTACACTCAATGTGttctataaaaaataaaaaaaatgaatcaaTAAATGACATAACGATGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163839 lncRNA upstream 3619 40777198 ~ 40777407 (+) True G142643
TU163808 lncRNA upstream 27275 40753492 ~ 40753751 (+) True G142612
TU163552 lncRNA upstream 195500 40584675 ~ 40585526 (+) True G142372
TU163492 lncRNA upstream 274804 40506019 ~ 40506222 (+) True G142314
TU163490 lncRNA upstream 275065 40505722 ~ 40505961 (+) True G142312
TU163937 lncRNA downstream 76553 40924312 ~ 40924529 (+) True G142733
TU163939 lncRNA downstream 78569 40926328 ~ 40926634 (+) True G142735
TU163910 lncRNA downstream 80460 40928219 ~ 40928482 (+) True G142707
TU163908 lncRNA downstream 89593 40937352 ~ 40940688 (+) False G142706
TU163909 lncRNA downstream 89614 40937373 ~ 40940688 (+) True G142706
XM_021562456.2 mRNA upstream 127644 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 461763 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 555694 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 555694 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 555694 40116765 ~ 40225332 (+) False LOC110489640
XM_021562694.2 mRNA downstream 33415 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 446922 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 448631 41296390 ~ 41355070 (+) True LOC110489815
XM_021562771.2 mRNA downstream 606500 41454259 ~ 41460908 (+) True LOC110489825
XM_021562780.2 mRNA downstream 691481 41539240 ~ 41541654 (+) False LOC110489834
TU160072 other upstream 2729282 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2837014 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2840312 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2858956 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 691536 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1120615 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1120615 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1662571 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2883113 43730872 ~ 43731218 (+) True G146054

Expression Profile