RNA id: XM_021562694.2


Basic Information

Item Value
RNA id XM_021562694.2
length 2546
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110489783
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40881174 ~ 40885140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCTTGGTAACTTGTGGGTGAGGTCCATTTCAACCAATGAGGAAAGAATAGCACAGACGATCCCTGTGTGTGAAAAAGAATGGCTGCCAGTTTGTCTCTCTTGGAGGAGCACCTCTCTTGTCCCGTTTGCGGTGACATCTTCAGGAACCCGGTGGTCCTCAAATGCAGCCACAGCTTCTGTGAGGAGTGTCTGCAGAAATACTGGAAGGAAATGGAGAATCCGCTGTGTCCCGTATGCAAAAAAGAGTGTTCATCTGAGGAGCAGAGTTTAAGCCTCGCCTTAAAGAGTCTGTGTGATTCCTTACAGAACGGGGGTGAAAACATCAGATCTGATAACAACTGCCAGCTGCATGGGGAGAAACTTAAAATCTTCTGTTTCGACGATAAACAGCTCATCTGTGTTGTCTGCTACACGTCAAAAAAACATAAAGGTCATGACTGTTATCCCGTTGAGGAGGCTGTGCCGGATTTGAAGAGTGAAATCCAGGCAGTCGTTTCCACTTTGAAGAACAAACTAGAAAACAAGAACACAGCCAAGATGTGTCATCAAAGCTGGGTGGAGCACATAAAGGGCCAGGCCCAATTTGCAGAGGAGCAGATCAGCAGGGAGTTTCAGAAACTCCACCAGTTCCTAGACGAGGAAGAGACGGCCAGGATCGCTACCCTGAGAGAGGAAGAACGGCAGAAATCTGAAGTGATGCAAGAAAAAGCTGAGACATTGGCCAGAGAGCTCACAACCCTTTCAGAGACGATTGTAGTACTAGATAAGGAAATGGAAGTTGACAATATCACATTCCTGCAGAACTACAAGGCCATACTTAAAAGAGCCAATTGCACATTCCCAGATACTGAAGATACTCAGGTAGTGTCAGGAGCACTGATTGACGTGGCCAAACATGTGGGATCTCTCAAGTTCAAAGTCTGGGAGAAGATGCATGAGTTTGTTGACTACACTCCTGTGACCATGGATCCAAACACAATGTCCACTAAGTTCACACTCTCTGATGACCTCACCACTATGACATACTGTGACGAGAGGCAGAGTCTCCCAGACAATCCCGAAAGGTTTCTTAACGTAGGAGTGTTGGGTTCTGAAGGGTACAGTAAAGGCATCCATTACTGGGATGTGGAGGTTGGAGATAATGATAACTGGATCTTAGGAGTAGCCAAAGAGTCCATTCCACGCAAGAAGCAAGTCAAAATGGAGCCTCAGAGTGGATTGTGGATCATCAAACACATCAGTGGCAAATACAAAGCATGTATAAAATCGCATGTTCAGATCAAAGTAGATGAGAGCCCACAAGTGATCCGAGTTCGACTGGACTGTGACAAAGGGGAGGTGACATTCTGCGACATCACCAAGAACACGACACTCTACACCTTCAAAGACAAATTCACTGAAAAGGTGTTCCCGTACTTTAATAGTGGAAGTAAGATTTGCCCACTGCGCCTTTTTGTAGCGGGAAAGGCGAAAACTAGCTAATTGCCAGGGTCAAGTGAGGACAAACATATGCAATTATGTAATGACTTTATGTACTGACATTAGCTGGAAGGTTGTGAAAATTGTTTGACTAAAACTCCATGTAATTAAGACtttcctttatttttatttatttgttattttaccaggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagttacaggggagaggagggggatgaatgagccaattgtaaactggggattatcagttgaccgtgatggtttgagggccagattgggaatttagccaggacaccggggtttccacccctactcttacgataagtgccatgggatctttaaatgacctcagagagtcagcacacccgtttaacgttccatccgaaagacggcaccctacacagggtagtgtaatcactgccctggggcattgggatagtttttagaccagaggaaagaagAAGACACTGCCATCTCAGAAGTAATGAACAAGTGTTTTAAGCAGttgatacagtatataaaaaatgtaatgtcAGTAATCAAAATAAATGATATGTACGTTTCAATTGCACCTTCCTAGTCATTCAATAACACTTGCATTTACACATTCACATAAAAAGTTTGACTGTACTGTCGTTAAAGACATCAACCACTAGATGGGGATATCCAGCTATATAGACATCCCTATTGCTCAATGCCACACTGTAAAATGTGCGTACAGTCAGAGTAGGTTCCTCTGAGCTGAGACAAaaccttgaaaaaaaaaaatcatacaatgacaaTACATATTAGGTTTCAATGAGATCCAGGTGGATGGGTAAAGGGCTCTCACCCTATAGTACTATGAATCTCTGAACTTGGATTTCAGTTTTTGATCAGGGCACAGGACCGTTTGTGGGCAGCTACTAAATGGGTCcagtggcgacccatcattcagggcagttgagttttttttttgttttgttgcctgtttgcatgttattttggcattaatacagtatgtgtcatcagtttgcaaacaatgtaaattaAAAATGTCATACATTGAGTCagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163856 lncRNA upstream 77583 40803375 ~ 40803591 (+) True G142660
TU163841 lncRNA upstream 94996 40785940 ~ 40786178 (+) True LOC110489695
TU163839 lncRNA upstream 103767 40777198 ~ 40777407 (+) True G142643
TU163808 lncRNA upstream 127423 40753492 ~ 40753751 (+) True G142612
TU163552 lncRNA upstream 295648 40584675 ~ 40585526 (+) True G142372
TU163937 lncRNA downstream 39172 40924312 ~ 40924529 (+) True G142733
TU163939 lncRNA downstream 41188 40926328 ~ 40926634 (+) True G142735
TU163910 lncRNA downstream 43079 40928219 ~ 40928482 (+) True G142707
TU163908 lncRNA downstream 52212 40937352 ~ 40940688 (+) False G142706
TU163909 lncRNA downstream 52233 40937373 ~ 40940688 (+) True G142706
XM_036948320.1 mRNA upstream 33415 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA upstream 33415 40783361 ~ 40847759 (+) False LOC110489695
XM_021562456.2 mRNA upstream 227792 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 561911 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 655842 40115958 ~ 40225332 (+) False LOC110489640
XM_036948451.1 mRNA downstream 409541 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 411250 41296390 ~ 41355070 (+) True LOC110489815
XM_021562771.2 mRNA downstream 569119 41454259 ~ 41460908 (+) True LOC110489825
XM_021562780.2 mRNA downstream 654100 41539240 ~ 41541654 (+) False LOC110489834
XM_021562800.2 mRNA downstream 809297 41694437 ~ 41710790 (+) False LOC110489853
TU160072 other upstream 2829430 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2937162 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2940460 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2959104 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 654155 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1083234 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1083234 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1625190 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2845732 43730872 ~ 43731218 (+) True G146054

Expression Profile