RNA id: XM_021562771.2


Basic Information

Item Value
RNA id XM_021562771.2
length 3226
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110489825
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41454259 ~ 41460908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGAATGTTACTTCAATTCCAGATAACCAGACGCTTGGTCCATGGACTGATTATAGCATGGAATACAAAGTGGTCAGCATATTTTTTGTGATTCTCATCTGTGGGATAGGAATAGTTGGAAACGTTATGGTGATTCTAGTTGTTCTTACAACCAAACACATGCGGACACCCACCAACTGTTACCTGGTGAGTTTGGCGGTGGCCGACCTGATGGTTCTGACGGCGGCGGGACTGCCGAATATTACACAGAGTTTGTATGGAGGAGGCTGGGTGTACGGATACGTCGGGTGCCTTAGCATAACTTATTTCCAGTACTTGGGCATCAACGCGTCTTCATGCTCTATCACCGCTTTCACTATTGAGCGGTACATAGCCATCTGCCACCCAATAAAAGCGCAGTTTATGTGCACTCTGTCAAGAGCAAAGAAAATCATAGTGGTCGTTTGGGCTTTTACCTCGCTCTACTGCGCCATGTGGTTTTATCTGTCTGACATGAACGAGTTGATTTACGACAATATTACCGTGGTCTCATGCGAATACAAAGTGTCAAGAAATCTTTACCTGCCATTTATCTACTTCACGGACTTTGCCATGTTCTACGTGGTGCCCCTCATGCTAGCCACGGTTCTGTATGGATTTATCGCTAGAATTCTTTTCCTCAACCCATTGCCGGCTGACCCCAAGGAAAACACAAAGTGGAAAAAAGAATCATGCCAAGGAAATAGAATGATGAGCACCAACAATTCATCCTGTAGCACAACCATCCGCTCTCGCAGGCAGGTGACTAAGATGTTAGCTGTGGTGGTGGTGCTCTTTGCCCTCCTCTGGATGCCCTACCGGACGCTGGTGGTGGTAAACTCCTTCCTGGACAAGCCTTACCTGGACCTCTGGTTCCTACTCTTCTGCCGCATCTGCATCTACCTGAACAGCGCCGTCAACCCTGTCATCTACAACGCCATGTCTCAGAAGTTTCGCACCTCCTTCAAGAAGTTGTGTCACTGCGGTCCGCAGCGATTGGAGAAGCCGGCGTCTTACAGCTTGGCCCTGACCTACAGCGCCATCAAGGACACAACCAATGGAGAGAGCCCTGACCACTTCACTACCGAGATGGATGAGCTGGCCACACCCACACCCAGTGACCAGTTCCTGCCCAGCACCAAGAGGATATCATTTGAGGACACCTCTCTGTCAGGCAGGGTTGCCCTTTGCACTGCCTGACGGAAAAAATAACTCCATTCAGGCAACAATGATTACCTGCAAGGATCTTCTTATCCTTAAGCTCTAGTTTGTGAATTCAAAATGGTCTCCAGCAGCATACTTCCAATTCTATTCTATAACTCATTTTCTGTCGAGGAATTGATTTAATATTTGAGCAGTGCAACGGCAAACATTAAATGCCAAAAAATGTGTTGTTAACAGAGGAAGTACTACTTCATTTCTTTATCTATCATGGTGAAAATatattctcccctctctctgtagccATCTTAGCACAAAGCACCCAATTATAGGCATTGTTTAAATCCGTCCTAAACATTGTGTGACACAATGCAAGGTAATAATCATACTGCTTTCACATACTGAGCAACAGTTGCCATCTCTGTAAAGTGTTTTCCTACAAGGGAAATATAACAAGGGAAAGATGTTATCCCTCTTTTTATCTGGAGAGGTGTAGGCCAggaactcagtgtgtgtgtgtgtgtgttcgtgtgtgtgttttaaagatAAGCTCACTCTACAGGAAGAATCAAACTGTCTGGGCTGTTGTTAAAACCACCCTGCTACCTTCCATGTTTTAAAACAACACAGAGAGAATGTGATCACTGACCACATTTCAAAGGCAGAATTCAAAGGAGGCAGAGTATCAAAACCATCTCTGCTCAAGGGGTGTAAATATCACACATTGCTTTAAATTGAAACCTGCCTGTCAGAGAAATAGAGATGAGGTGGGATGAAGTTTATTTAAAGGTTACAGATGATGAAAAGGACTGATAACAAAGCAATGACACGCCGGATCTGTCATCCGTATGATTCCTCAATACCATTTGACTTTATAGTAACCTTATTGGCTAAAAGGTTCACCCGATATGAAACGTTCCGCAGGGGCTAGTGTCAAAAATGCAGCATGGTTAAACATCCTGCTGTACCTGTAATGGACTACTGTGGTGTGGATTCAATCAACAAGTGTTGGAGGGTCCAGAGTCCATAGCGAGAAAGATCTTTGATGACTCAGACACCTGGGTGGTTGATGGTTGTCTCTAGGTCAGGGGCCTGACATGACCAGACCAAACATTATGTTGACATCCTCAACAGCAGAGACTGATGGTAGCATTTCCCCATAATGGATCCCCCCAAGCACAACCCGGCGAGATTAGAGGATTCATCAATGCCAAAGTGTTCTACTTTGTAGATTTGAGGGAGGCTGGTGAGTCATGGTACAGCCATAAAGCACGGGCACAGTGTCaaaaaaacagaaagaaaaaGCATAAAAGGAATGAGCATTGATTTAATTTAGAATTCAAATAAGGAAAAAATAGAacgtttgttgttgtttattttatACTGATGAAACGCCCTCTCTGTCCCTTTTAGGATACTGTAAAAATGCTTGCAAATGATTGTGCGTTGCCGTGTGAAATTGATGTACGATGTACATTTTCGATGTACGTTTCAGACCTGTTTTCAATTCATACCTTTGTACCATTTACATTGTGTCTGCCAGTAGAGCTATTTTGTAATAACGTAGTTTGTTTTGTTCAGTTTTATTGTTTGTTCCCATCAATATACAGTATTTTACTATGGAgcgatcaatgtggagctacgcTCTTCTTCTTTGGCAACACTACAACTACAGTAGGTTTCAAAGAAGGTATGTGAAATAATGATCTGTCCCTCTTGCACTTTCATCTACTATCTCCGTTGCACAGTTTCCACCATTAGAGGGAGTGGTGCCTGGTAGCGAGTTTGCAGCATGGACACTGTAAaacaaatgatgttgtggtgtgATTTCAAAAAGAAAGACATCTATGTGCTGTATACAGTTATTCTTCAGTCAGCAATGTTGTGTATCCTGGTCTTTCTTTGCTGGCAGTTCTCTGCATTGTAAAAACTACCCTTGTTGTTGTTTGGatgttttgtgttttgtattttgtattgtcaTTTGTCTATAATAAAATGGTCATTGATCATGTACTCTGTCAAATATTGATAATTACTCTCAGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164476 lncRNA upstream 56622 41397300 ~ 41397637 (+) True G143237
TU164475 lncRNA upstream 59152 41394853 ~ 41395107 (+) True G143236
TU164474 lncRNA upstream 61614 41392430 ~ 41392645 (+) True G143235
TU164464 lncRNA upstream 77572 41376316 ~ 41376687 (+) True G143225
TU164356 lncRNA upstream 130041 41238892 ~ 41324218 (+) True G143121
TU164993 lncRNA downstream 208884 41669792 ~ 41670307 (+) True G143739
TU165046 lncRNA downstream 281465 41742373 ~ 41742549 (+) True G143778
TU165047 lncRNA downstream 282611 41743519 ~ 41743788 (+) True G143779
TU165110 lncRNA downstream 331805 41792713 ~ 41838218 (+) True G143840
TU165132 lncRNA downstream 383067 41843975 ~ 41844344 (+) True G143860
XM_036948451.1 mRNA upstream 99059 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA upstream 99189 41296390 ~ 41355070 (+) True LOC110489815
XM_021562694.2 mRNA upstream 569119 40881174 ~ 40885140 (+) True LOC110489783
XM_036948320.1 mRNA upstream 606500 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA upstream 606500 40783361 ~ 40847759 (+) False LOC110489695
XM_021562780.2 mRNA downstream 78332 41539240 ~ 41541654 (+) False LOC110489834
XM_021562800.2 mRNA downstream 233529 41694437 ~ 41710790 (+) False LOC110489853
XM_036948527.1 mRNA downstream 238351 41699259 ~ 41710790 (+) True LOC110489853
XM_021562824.2 mRNA downstream 269777 41730685 ~ 41741910 (+) True LOC110489869
XM_021562836.2 mRNA downstream 289131 41750039 ~ 41826833 (+) True LOC110489877
TU160072 other upstream 3402515 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 3510247 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 3513545 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 3532189 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 78387 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 507466 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 507466 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1049422 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2269964 43730872 ~ 43731218 (+) True G146054

Expression Profile