RNA id: TCONS_00027711


Basic Information

Item Value
RNA id TCONS_00027711
length 1810
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_013861
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7954679 ~ 7957870 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGCTGAATTGATGACAGTTCTGTCCTGCAGACATTATCCTTCGAAACAAAAGgTTTTGGATGTGGCTTACTTGTAATCATGGATAACGAGATGCTGACTTTTATGACTTGGAATACCAATGGGCTTAAAACAAAGCCTAAGGATGTGAAAGCACAAATAGATAAGTTTAAATGTGACGTTGCCTTCATTCAAGAGACACATATTAGTCCAAATAACAGAAGTGTTTTTGATCTTTTTCAAGATTCAGAATCATTTTTTACAACTTACAAATCAAAGGAAAGAGGTGTGGCAATTTTGATAAAAAAGGATCTTTTAGGAAAATCAAAAACATATGACATGATGGATGATTCTGGCTGTTACATTGCAGTCAAATGTAACCTCAAAGGTCAGCTGTACACACTAGTGAGTGTATATGTTCACCAGGTGGATGCAAGACCCCTAAAAAAGCTCAGAATATTACTTGAGAACTTTGCAGAGGGCATCTTGCTGATTGGAGGAGACTTTAACATTCCTTTGAATCCCTACCTGGACAGGAAATCTTCAACAAAGAATGAAAGGCACTTCATGTTGAAACCAACTGTGGACAAATTTATGACATCCTTCCATCTTGTGGATGTGTGGAGAAGACTTCACCCAATAGACTGCCAGTATTCTACATCTCATAACTCGAGACTGGACTATGTTTTTGTGCCAGAAGAGTCAATGAGACATGTAAAAAGCTGTACAATTTCTATGGAAAAGTGTTGTTCTGATCATCAGCCAGtactgtttgaaataaaaaaaaactgtaaaaggaAAAGAGGACCACCAAATCACTTCGAtgacaacacacaaaaaaagaaacaaaagatcTTGAAGCAAATGGTGGGGGTGAACACGAAACAAAAGAAAAGGGAAATCTCTACTTTTGTGCCTGAGATTTCAAAGCAGTGGCTCAGTTGCAAACAGGAATATTGGGGTAAAGATTTTGATTTGACGTACAGTCAAAAGTCTATGGAAATGATTCCTGTTATGGTTGTTGAAAAAGCAATCCACTCCTTGGCAGTAAATGAAAATGAATCTAAACAACAAGATTGTAATTCACTCTCATTCTATAAGCGTTACTCTTTTGCTCTGATTCCTTATCTGTGTGTTTTTTATCACAAAATACTTCATAAACCAATGGCCACCCCAAAGTATTTCAACAAGGCCACAAAAGTCGGGCAACACTGCATATTCAATATTGATTATCTGATTTTAACCACAATCATGGCCAGGTGGCTCTGTGATCACTTGGATTTGCATTCATCAGATTAcagaaaagacaataaaaaaactgTCGTTTTGGCTTTTAAAAATGGACCAAAAATGATTCCATGGTCCTTCCTAGAGAGCTGCTTGGCAAAAGAGCAAAAGAGAAAACCCCCACTGATGGCTGAATTTAAGATTGACTTTCTTAAAAAGATTCTGAAAAACAGCAAGGACAACAGGTACAAAATGTTGTTCTGGGGTTGCCCTTTAACTCCTGTGTTGATGAGGCTGTGTCTCACACATGTGGCTGAAAGATTTATTGAAAGAGCAAATCAGCCAAATTCAGAAATCCAGATCTGCAAAGAAAATGTCATTGTGAGATTAAATGAGAATGTCAGAGAAGCTTTGCTGAAAAAAGCAGAGCATGAATTACCCACAGTGTACTGTAAATTTGTTGATGCTCTCAAGGAGGTAGAGTAAATAGCTGATTAATTTAAAAGTGATTGGTTtggtttgtatgtttgtgtgggtttccttctggtgctctggtttcccccacagtccaaagacatgcagc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150909

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027710 lncRNA upstream 4776 7941914 ~ 7949903 (+) True XLOC_013860
TCONS_00027704 lncRNA upstream 31408 7919150 ~ 7923271 (+) False XLOC_013858
TCONS_00027705 lncRNA upstream 32085 7920135 ~ 7922594 (+) True XLOC_013858
TCONS_00027702 lncRNA upstream 35665 7916790 ~ 7919014 (+) False XLOC_013858
TCONS_00027699 lncRNA upstream 68514 7881177 ~ 7886165 (+) False XLOC_013857
TCONS_00029695 lncRNA downstream 3651 7961521 ~ 7965420 (+) True XLOC_013862
TCONS_00027712 lncRNA downstream 8246 7966116 ~ 7968667 (+) True XLOC_013863
TCONS_00029872 lncRNA downstream 465042 8422912 ~ 8424378 (+) True XLOC_013866
TCONS_00029873 lncRNA downstream 715812 8673682 ~ 8677972 (+) True XLOC_013870
TCONS_00029874 lncRNA downstream 803002 8760872 ~ 8761674 (+) True XLOC_013871
TCONS_00027709 mRNA upstream 3726 7938211 ~ 7950953 (+) False XLOC_013860
TCONS_00027708 mRNA upstream 3963 7938121 ~ 7950716 (+) False XLOC_013860
TCONS_00027706 mRNA upstream 22756 7929704 ~ 7931923 (+) False XLOC_013859
TCONS_00027707 mRNA upstream 22756 7930004 ~ 7931923 (+) True XLOC_013859
TCONS_00027701 mRNA upstream 30769 7895086 ~ 7923910 (+) False XLOC_013858
TCONS_00027713 mRNA downstream 186686 8144556 ~ 8339860 (+) False XLOC_013864
TCONS_00027714 mRNA downstream 186703 8144573 ~ 8336736 (+) True XLOC_013864
TCONS_00027716 mRNA downstream 523932 8481802 ~ 8502321 (+) True XLOC_013867
TCONS_00027717 mRNA downstream 548308 8506178 ~ 8608414 (+) False XLOC_013868
TCONS_00027718 mRNA downstream 649013 8606883 ~ 8608273 (+) False XLOC_013868
TCONS_00027663 other upstream 470348 7484217 ~ 7484331 (+) True XLOC_013841
TCONS_00027658 other upstream 648116 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027653 other upstream 775014 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027648 other upstream 798980 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027637 other upstream 919359 7035206 ~ 7035320 (+) True XLOC_013824
TCONS_00027715 other downstream 341124 8298994 ~ 8299110 (+) True XLOC_013865
TCONS_00027731 other downstream 1134001 9091871 ~ 9096360 (+) False XLOC_013877
TCONS_00027739 other downstream 1192224 9150094 ~ 9169225 (+) False XLOC_013879
TCONS_00027757 other downstream 1471987 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027758 other downstream 1485902 9443772 ~ 9443878 (+) True XLOC_013889

Expression Profile

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