RNA id: XM_036948527.1


Basic Information

Item Value
RNA id XM_036948527.1
length 2650
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110489853
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41694437 ~ 41710790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTCGTAAATGGTGCAGTGCCAGTGTGCCACATCAGGATGCCTTGGACAGAAATACATCTCACCGTTACTTTTCTCACAGATCCAAAGGGGAAAACACAGCGTTAAGCACAATGGGACCATTCCAGGAATATGAGGAAAAGAAGTCATCAGGGAAGGAAAGCCCCCGCAGCCGCATCCCACGCTTGATCCTTCATCCTTTCCACCCTAATGGGAAAGGGTCACCCTTGTCCGAATCACCCATTTCAGAGGAGGAGGGTAAGGACTGTGACATCAGCTCGGACAACTCCAAACGGACCATCAGCTTTTGCTCAGATGACACTGGCTGCCCCAGTAGTCAGTCTGTGTCCCCCTCCAAAACCCTGTCAGGGTCAGACAACAGTCCACATGGCTCCCCCACGCCCACTGCAGAGTGCAAGACCAAGGTGAAGAGGGTGAGGTTGATGGCAGAGTGGCACGCACCACCGCCGAGGCACAAGAGGGAGCAGCGATCGTCCACATTGCCCAGAGGTAGCGAAGCAGACTTCAGCTCCTCCAGCAGCACGGGCAGCCTAAAGAGAGGGGAGAGCCTGGCCCACAACGCCACAGGGAAGAAGATCTCCTCACGCAGTCGTGGTGCCCACATCAGGAGCCTCCCGATGTTCAAGCTGGCAGGGAGCCCGTCAGCATCCCATGATGCAGAGCTCTATGCCCCATACAGGACAGTCCCCTCATCcaccaacagcagcagcaactcCAGCCCCAAAATACCCTCCAGGATGCCCCCCGGACGTTACcactcctgtggggacagccATGGGCTCAGACCCCCCAATCCAGAGCAGTATCTCACCCCCCTGCAGCAGAAGGAGGTGGCCATTCGCCACCTGAGAAGCAAGCTGAGGGAAGCGGAGAACATCGTCCATGACAGGGAGTCCGAGATCGAGGAGCTCAAGTCCCAGCTGGGCAGGATGAGGGAGGACTGGATCGAGGAGGAGTGCCACCGTGTAGAGGCGCAGCTGGCCCTGAAGGAGGCACGCAAGGAGATCAAGCAGCTCCGGCAGGTTGTGGAGACCATGAAGAGCAGTCTGATGGAGAAGGACAAGGGCATCCAGAAGTACTTTGTCGACATCAACATCCAGAACCGCAAGCTGGAGTGCCTGCTGCACAGCATGGAGATGGCCCAGAGTGGCTCCACGCTGCAAGACGAGCCAACCATGGACTTCATCTGTGGTGACTCCCCTGTCAATGATAAGCAGGGGGAGGTGGGTGACCAGGCGGTGGAGGAGATGGCAGACTGTGGGCTGCTGGTCAACGACAACCTGGCACACATGCTCATGTCCACAGAAGTGGACTCTAGCGGTAAGCTACGCTGCCACCCAGAGGCTGGTCCTGGGGTGTCCACTCTACTCCACAgtctggaggaggagaagatcGCACCACTGCCTCCACCACCCTCCAACACGTTCTGTTGCAGCACACTCCCCTTCCCTGCTCCAGAGGAGAAGGCCGTTCAGACCGAGATGGTATCCTTCCCTCCTGACCTGCACACCCTCCTGCTGCAGCTGCTGAAGTTCCATGGTGGTGCAGTTGGAGATGCTCTCCTTCCAGCTTCTACCAGCCTCCTAGAAATCCCAGCACAGCAGGGCCCAGACTTGGCCCCTATCCCGTCCACCTTAAGCCTGCCTAGCTCCTGCCAGCCCATTCCAGTTCTGCCAGTGAGCCCTTATATGTTAAGTAATTCAGGGTTGTGTTGCTCAGACCCTGAGGTGGTCTCCATGCGCTTCATGGAGGAGCTGGATTTTGAGGTGAGCAGTGAGGAGCCCTGCAAGGCCCTCGGGGTGGCTGTGGTCAACAAAAGCTATTGGAGCAGCAGCTTCCTTGTTGATCTTGTTGCTGTGGCCGTACCAGTGTTGCCCACAGTGGCCTGGCTGTATTCCCGGCATGGCGTGGATGGGGCGGCGCCAGTCTACAACATCGCAGCATTGATCCGGGGCTGTTGCATCATGGGATTGCACTCTCTCCGTCATGTCACTCATCATGGGGCAGATGTGTAACGGTCTACGACCCCTGCGTGCACAGCCCGTCCCCTCCAATTAAAGCACTTCAACATTCGTTAATCAAAGAGTATTTGAATATTTAGTTTTTCTACACTTGTGAATATTAATGCTACAGTTATTACTTTAGGTTCCCACGTGGTTACTTTGCACTGTGTACAGTTGTTGCGGTGAGTTAAGTCTTTGTTTATGGTGAAAGGATtttgttaattgtatttatttttcctctgttctcttGTGTATAATCTGAGTAGGTGGTTATGCATCATTGATGTCCTGGGCTGGCACTAGTTACCCCTACTTAAAGCAGCCATGTTTTTTTTCTGAAAGTATTAGGATTTCTGAGGGTGGGGATGAAATAGAATGTTCGTTTGAACGAGTGTTTGTAGTGGTTTATGTTCCAAAATAATCTTAAACCTGCAGCCAAAGCTTTATTAATGAACGTTCACTCTTTATTTTTCTACCTGGGAGTAGAGCGTACATGTGTAACAAATTGATAGGTGTCAGACCAACGCTTCAAGACAACTCATACTTGTTTGTGCCTGAGCTACTGTGTGTAATACTCATAACATCAAATGTCCTAATATATTTACTATTAAAGCATGATAATCCCA

Function

GO:

id name namespace
GO:0017075 syntaxin-1 binding molecular_function
GO:0019894 kinesin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164993 lncRNA upstream 28952 41669792 ~ 41670307 (+) True G143739
TU164476 lncRNA upstream 301622 41397300 ~ 41397637 (+) True G143237
TU164475 lncRNA upstream 304152 41394853 ~ 41395107 (+) True G143236
TU164474 lncRNA upstream 306614 41392430 ~ 41392645 (+) True G143235
TU164464 lncRNA upstream 322572 41376316 ~ 41376687 (+) True G143225
TU165046 lncRNA downstream 31583 41742373 ~ 41742549 (+) True G143778
TU165047 lncRNA downstream 32729 41743519 ~ 41743788 (+) True G143779
TU165110 lncRNA downstream 81923 41792713 ~ 41838218 (+) True G143840
TU165132 lncRNA downstream 133185 41843975 ~ 41844344 (+) True G143860
TU165216 lncRNA downstream 261135 41971925 ~ 41972187 (+) True G143940
XM_021562780.2 mRNA upstream 157605 41539240 ~ 41541654 (+) False LOC110489834
XM_021562771.2 mRNA upstream 238351 41454259 ~ 41460908 (+) True LOC110489825
XM_036948451.1 mRNA upstream 344059 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA upstream 344189 41296390 ~ 41355070 (+) True LOC110489815
XM_021562694.2 mRNA upstream 814119 40881174 ~ 40885140 (+) True LOC110489783
XM_021562824.2 mRNA downstream 19895 41730685 ~ 41741910 (+) True LOC110489869
XM_021562836.2 mRNA downstream 39249 41750039 ~ 41826833 (+) True LOC110489877
XM_021562883.2 mRNA downstream 326710 42037500 ~ 42039843 (+) True LOC110489902
XR_005036748.1 mRNA downstream 356214 42067004 ~ 42071284 (+) False LOC110489918
XR_005036747.1 mRNA downstream 356214 42067004 ~ 42092073 (+) True LOC110489918
TU164559 other upstream 157668 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 3647515 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 3755247 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 3758545 37920391 ~ 37940714 (+) True G139089
TU159974 other upstream 3777189 37920391 ~ 37922070 (+) False G139089
TU165213 other downstream 257584 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 257584 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 799540 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2020082 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 2057917 43768707 ~ 43769162 (+) True G146091

Expression Profile