RNA id: XM_021562824.2


Basic Information

Item Value
RNA id XM_021562824.2
length 4364
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110489869
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41730685 ~ 41741910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAATattgcagggatcatcaactatatTCAGGTCCGCACGATTTCTAATTGAACCCTTGGAACGGATGGTCAGATGGCCGGAGTCCCGGAGCATAATTTCAAATCATTTTCATCGAAGTGGGAGGAGTATTTCGAATATTTGGGGGCGTAGTCAACCATATAAACTGACCAATGAGCTTACGAAGTAATTGGAAGTGGTGATTTTTAAACTAAGTGTGTTATGAACAAACATACGTTTTTTTGTAATGAAGTATAATTCTTTCACGTGAAAGTACATTTGTAGAAAATGTGAGATTCGTTTTAATCTAATGTACGGtgtaaaaaaaaagtgatttGGATTGCTTTTTAGCTTTGCACGTCTTTGTGCTCCGCAACGACCCGTAGCTAACGTTATTAGCTAAGCTAGCTTTGCTTTGGCCAGACAATATGCAGATGGTTAGATACCTAAAGGCGTTAACTTAGCTACACATATCCCAACCAGCTGGTTATTTACACCAGGGTCCGTTTTCTGCTTGTTAATTCACACATCAGAAGTATATATCGCACTATAGCGTAATGTCATATTTGTGTGTATAGATAGCTAGGCTCACAGTAACGTTAGCTGCCTCAACATATTAGCTACATTCTGCAGAGATGTTGGAGGAggagcatacagacagacagcaccaacTTGCCATGTTATGTCAGAAGCTCGACCGAATTAAAACAAGATATTTAATCGAAGATGAAACTGATAATATCAACCAGGCCATTGGCTCAAATTCCCCTGAAACGTGTCTCGCATATCTGATGGATTTGGAGAAGAAAGGAGACCCTCACTTGGATCCTAGTCATCTCACAAAGCTTACAGACTTCTATTCCCGTGTATTCTCAACTATGCCACTGGGAAAACACTGCAAAAATGAGAGCTATGCCAGAATGCTGGTCAGATTTGCAGAGCTGTATGTAATCCAAGACACCAAGGGGGCAGAGGACAACTTCAATGTTGCGACTACACACTGCCAGGATTTTGCTTTTGTCCACATTGCACATGCTCAGTTTGAACTGTCTCAAGGCAACACAAAGAAAAGTACTTGGATACTTCAGAGGGCCATTGAACTGAGTGCCAAACCCAACGACATGCTAGAGGCTGCTATGCAGAACTTGACTTTGGGCAAAGCAGAACTTCTTTCCTCTGAGGATAAGGAAAATGTACCAGTCTCAACTTATAATACACATGGTTCTGCGAAAAATGGAACAGAATTTCGCAAAGTCTCGAGAAACTCCGACTGTACAGGCGACTTGCAGCTTTCCAGTATTTTTTCTTCAGGAACAATGGAACCACGGAATGGACCCCGAGAGGACAAGGTTCCAGCTTGGAGGTCTGGTTCTCAACGAAAGAGAGCCGTTGGCATGgcagggagagagagcagtagactacAGGCAATCTCAGAAATGGATGATGATGACAGTGATGGAAGACAAGTGAAGATGGAGGCTCTCATCTCAAGTAGCTTGTCCAGGCAAACTTCTGGTTCAAGTGCGATGTTATCCTTGTCCTCGGCCAAGAAGCGTGTTGAAGATGGGGATTTCCTCAATCTAAAGACACCTATCATTAGCCCTGAGCCATGCCCATGGAAGGACATGAGAATTGTGGACTCCACCACTACACTGCTGCACAGGCAAGATAGGAGAGATGACACTAGGATGGAAGATACCACTGACAATATAAACCAGATAATTGGTTCCAACTCCCCTGAGGCTTGCCGGATGTATCTGACCAAGCTGGAGAAGAGGGGCAATCCTCAGACAGACACCAACCTTCTCCTAAAGCTGAAGGACAGCTATTCCAGAGTCTTCTCCAGACTGCCATTGGGAATGTACAGCAACAGTGAGAGCTATGCCAAGATGCTGGTCCGATATGCTGAACTCAAAGGCATTGATGACCCAGATGATGCTCGGGACAACTTCATCGTTGCGAGATCCAACTGCAAAAGCTTTGCCTTTGTGCACATAGCACATGCTCAGTTTGAGGTTGCTCGAGCTCAGGTCAAGAAAGGCACGTCAATACTACAGAAAGGCCTCCAGGTGAACGCAAAGCCCACTGAACTAATTGAGACTGCAATGCAGAAACTAAAAGCTGGGAATTATCAGTTTCTCCCCGCAGAAGACCGAGAGAGTCTCCCAGAGCCACTGTCTCACGGGTCATTGAGTCTGTCAAACTAtggtagagagagggagctggagattcccacccgtttacctctgaGCCAGACACAGCCCAAACCCTCTAGCATGGAGCTGTCTTCAGGGTGGAAAATACCAGCCCATGTAAGCAGAGTCGTGTCTCCAGAGGAGAAGCACACCCCTCCTGATTTCACGCCCATTCCACGTCTGGTGGACTCTCTACCCACCCCATCACTTCCTCTCCCGTCCAGACTCAACCCACCCGTCGCCTGCCAGATGCCCAACTACAAAGACACCAGGGCCAACAGTTACTTTACCCCTGGGGTCAAGAGGAACTCCCCATATGCGGGCCCTCTCTCAGCAGCCCATAAAGCCGGCCCTGCCCAGCAGCAGCCGTGCACCCCCCTCAGCCAGGTGTCCTATGCCCAACAGACCCACCAGGGTTCTGCCGTTGCTCTCTCAAACGAGTCCATTGTGATAAAGGGCAAACGGTTCCTCGTCCTGAAGATGATTGGCCGAGGTGGATCCAGTAAGGTGTACCAGGTTCTGGACCAACGTAATCAGCTGTTTGCTGTGAAGTATGTGAACCTGGAGGAGGCCGATGCCCAGACAGTGGAGAGCTACAAGAACGAGATAGAGCATCTCAATCGCCTGCAGCAGTACAGTGATCAGATCATCAAGCTGTATGATTATGAAATAACCAACAGCTACATCTACATGCTGATGGAATGTGGTAACCTGGACCTCAGCACCTGGCTACGCAACCGTAAAACTATCAACCCGCTGGAGAGGAAGTTATACTGGAAGAATATGCTGGAGGCAGTCCAGACCATCCACAAACATGGTATTGTCCATTGTGACTTGAAGCCAGCCAATTTTGTGATTGTGAATGCCTCGCTGAAATTGATTGACTTTGGCATTGCAAACAGCATCCAGCCTGATGTGACAAGCATTATGAAAGATTCTCAGGTTGGGACCTTGAACTACATGCCCCCTGAAGCCATCAAAGACACTTCATCCCAGCCAGGGAAGGCAAGCTCTAAGATTAGTACTAAAGGTGATGTGTGGTCCCTTGGTTGCATCATGTACTGCATGACCTATGGGAAGACTCCATTCCAGACCATCACCAACCAGATCACCAAGCTACACGCCATCATTGACCCGACCCATGAGATGGAGTTCCCTGACATTGCAGAGAAGGATCTGCTGGATGTGTTGAAGAGGTGCTTGGTACGAAACCCAAGAGAGCGGATTTCCATCGCGGAGCTGCTGGAGCATTCATACCTAAAGCTTCAGTCTCAGCAACAGTCACCTGTGCCAGCACCTCCTGACAATAATGATCTGAAGAGGATCCTCAACGAGCTCGCTGCCTTACAGTCTCCCAACAGCATTGCCAGGGCTGCTAATAACTTGGCGAAAATGTGCAACAGTGGTCGGAAACTGGACGCTGCAGGGTGTGTAAAGTCATCCAGCCATCTCAACTGGAAGATGTAGATGCTCCACTGATGGCCTAAAAAAAAACAAAGGGGTCAGCAGATGGGACTCCATTCCTAGCCTAAGTCGAGCTTTACCCAATAGATACACTGCCGATTCCATGCTTCAGCACAACCGGAAAAATACATGCTGTTTGGCAGTACACTGGCCCTGTTTGAATACTTTGAAAATGTTTCCTTCCCCTTTTTAAAGTAATCACTGATCTGTCATGTCTGGAATGGTGAAAGCTATGAAGTGGAACCTTTGCTTTTATTCTATCCAAGTATGTTAGATCAGTGATAACACAGAGGATGGGAGGAAAGAAGGAAGCATTTGAACTGTTTTTAAGCAGGGTCCATAAATGCCCTTGAGAGCTCTACCATCTCCATGTTTTATTCTCTCATGTCTTCATGACTTCCCCTTGCTCGCATCTTGAAGGATACGGATctacacttttttttctttttaagaTGGACACTTTTTTTTGTGTTTCCTTACTTTGCACATTTTACTGTACTCTCAAACATGTAACTACAAAAAAAAATGCTCAACAAATGAACTAGCTAACTGTATTattgatgtttatttatttcagctgtcAATTTCATCTGTAGTTATTTataggtgtgtgtatatacagttgaattcggaagtttacatacatgttagccaaatacatttacactcagtttttcacaattcctgacatttaatcctagtaaa

Function

GO: NA

KEGG:

id description
K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164993 lncRNA upstream 60378 41669792 ~ 41670307 (+) True G143739
TU164476 lncRNA upstream 333048 41397300 ~ 41397637 (+) True G143237
TU164475 lncRNA upstream 335578 41394853 ~ 41395107 (+) True G143236
TU164474 lncRNA upstream 338040 41392430 ~ 41392645 (+) True G143235
TU164464 lncRNA upstream 353998 41376316 ~ 41376687 (+) True G143225
TU165046 lncRNA downstream 463 41742373 ~ 41742549 (+) True G143778
TU165047 lncRNA downstream 1609 41743519 ~ 41743788 (+) True G143779
TU165110 lncRNA downstream 50803 41792713 ~ 41838218 (+) True G143840
TU165132 lncRNA downstream 102065 41843975 ~ 41844344 (+) True G143860
TU165216 lncRNA downstream 230015 41971925 ~ 41972187 (+) True G143940
XM_021562800.2 mRNA upstream 19895 41694437 ~ 41710790 (+) False LOC110489853
XM_036948527.1 mRNA upstream 19895 41699259 ~ 41710790 (+) True LOC110489853
XM_021562780.2 mRNA upstream 189031 41539240 ~ 41541654 (+) False LOC110489834
XM_021562771.2 mRNA upstream 269777 41454259 ~ 41460908 (+) True LOC110489825
XM_036948451.1 mRNA upstream 375485 41294681 ~ 41355200 (+) False LOC110489815
XM_021562836.2 mRNA downstream 8129 41750039 ~ 41826833 (+) True LOC110489877
XM_021562883.2 mRNA downstream 295590 42037500 ~ 42039843 (+) True LOC110489902
XR_005036748.1 mRNA downstream 325094 42067004 ~ 42071284 (+) False LOC110489918
XR_005036747.1 mRNA downstream 325094 42067004 ~ 42092073 (+) True LOC110489918
XM_036948609.1 mRNA downstream 358380 42100290 ~ 42141745 (+) False LOC110489908
TU164559 other upstream 189094 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 3678941 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 3786673 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 3789971 37920391 ~ 37940714 (+) True G139089
TU159974 other upstream 3808615 37920391 ~ 37922070 (+) False G139089
TU165213 other downstream 226464 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 226464 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 768420 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1988962 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 2026797 43768707 ~ 43769162 (+) True G146091

Expression Profile