RNA id: XM_021562883.2


Basic Information

Item Value
RNA id XM_021562883.2
length 2037
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110489902
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42037500 ~ 42039843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACCCATTGTAATGGAACATGGTATAGCCTAAGCCTTGCAGTGGTTTGGCCGTCGCGGACTAATTTTTTCGCATACCCCACTTGGAGAAGGGTCTATTCTTTTGATTCGAGGGAAGCATCGTTGGACCAAGTGTGCTCAGATACTTTTGTTCGAACATTATATCGTGTTTTCTGTGCTTTATTGGACTCCTCGAAATCTAATGGCTGTTTACGCACTTCACGTCAAAGGCTGACTCGAACGTGTGCGAATACATTTTAGTGAGAACTGCGATAAAACGAACGTCAACCGGATTTGAAAGCCCCACTAACACGATGAGCATGGTGAGAGACTGGTTGGCAAAAAAAACTTTTATCTTCGGAAATGTATGCGAGGATGCTGTTTAGCTAATGAATGTAATCGTTGCCACCCAGTTTAAATCGGAAGTGAAGCTATTTCCTTCAGGAAAAAGGTTGAAAAGTAGCATTTTGCATGTGGAGGACAGGAACTTGAAGGTGGATTGTGTGACtcgggggggaaaaaaacatttgtacACGTTCTACGCGTTGTGCTTCGTTTAATCTATCAGACTCATTGGAACCACGGGTGAGAAAATGCGTTTTTTGAGCTCATTGTTATGTTGTAAACTTGAAGAAACCCGAGAGAATACGACTCTACTTCGTTTGTGGTTTTTCTTTGCTGTCCTTGTTTCAAATTCAGCCTGTCCTGACAAATGCGTCTGTTTCACATCCACGGTCAAATGTTTGAACCAGGGCTTATTCGCGGTTCCACAGCCATTGCCAGCAAACACTAAAACCCTGTTCATTACAGGGAACAACATTTCCCATCTCACAGCTGTGTCTTTCCCTGTGCCCCTTGAGCAGTTAACAGACTTGTATCTCACAGGAAACCAGGTGGAGCTGGTGGACCACAATGTATTCAACAACTTGCCAAATCTCAGGCTGCTAGACTTGAGTAACAACAGGATTCTGCATTTTAGTGCTCAAGCTTTCTCTGATTACAACAAACTGCTGGACCTTAACCTCAGCAGGGCTTTTTACAACCATACTTCCATGAGTGAGCTCTTCAGTCTGCTACGGAGTGGCGGAGCCCTTCAACTTACCCGCTTAGACCTGTCCAACAATGACCTGGTGGTCCTCCCTGAGGACATGTTCTCCCGCCTCTCCAACCTCACCATCCTCAACCTACAAAACAACTCCCTCATTTTCATCCAGAATGGGACGCTGAGTGTTCCTCGGCTTCGTGAGTTAGACTTGAGGGACAATGCCCTGAGGGAACTACCCAACACTACACTGATGGACTTCAGCCTCAAGCCTGGGCTTCAGGTGCATCTGGCAGGAAACCCTTGGCTCTGTGACTGCAATATCGAGGACCTTGTGGCCTGGCTGAAAAGCTCTGAGCAGGTCACAGACAAGCAGAATATGACCTGTTCTGACCCTGAGGTTCTGAGGCAGTTACCGTTGCTCCAGATAAAAGAGTTGGAGTGTACCTTTTCAGGTGAAATGAAAGGTGTGCTGGAGACCTCGTATGTCTTTCTGGGCATGGTGCTGGCCTTGATTGGAGTGATCTTTCTGTTGGTCCTCTACCTCAACAGGAAGGGGATCAAGCGGTGGATATACAATATTCGGGACGCATGCAGGGACCACATGGAGGGCTACCATTACAGTTCCATGGATTGAGAATCATGACTCAGATGGGGTTTGTGAGCGGGCTCTCTGTAATATAAAATGTTCCCTCCCTTGAGCAAAAAAGGATGGTACGTAAAACTCTAACAGACTTATTTTGACTTGTagtaactaggctatatacacacacatctatatcCTTTCTGCTGGTTATATTTGAATCACATTTTTGTTTCCACTTTCCTCCCACTGTACAGTGTTGCTATGCTTGTTTAGATGTCTTCATTCCTTTTTAATATAATGTGATTATTAAAGCACTTGCTAATTTATCTCACTAGTATTACACTTGTTCGGTGGACATTATCAACATTTTTCATGATGTACAGCTGAATAAAATGTATTGCGTTACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165230 lncRNA upstream 34257 42002451 ~ 42003243 (+) True G143953
TU165226 lncRNA upstream 41454 41994942 ~ 41996046 (+) False G143950
TU165227 lncRNA upstream 41454 41994942 ~ 41996046 (+) True G143950
TU165216 lncRNA upstream 65313 41971925 ~ 41972187 (+) True G143940
TU165132 lncRNA upstream 193156 41843975 ~ 41844344 (+) True G143860
TU165258 lncRNA downstream 32972 42072815 ~ 42073988 (+) True G143977
TU165316 lncRNA downstream 43778 42083621 ~ 42084114 (+) True G144012
TU165320 lncRNA downstream 49447 42089290 ~ 42089530 (+) True G144016
TU165321 lncRNA downstream 50769 42090612 ~ 42090915 (+) True G144017
TU165338 lncRNA downstream 98917 42138760 ~ 42139014 (+) True G144034
XM_021562836.2 mRNA upstream 210667 41750039 ~ 41826833 (+) True LOC110489877
XM_021562824.2 mRNA upstream 295590 41730685 ~ 41741910 (+) True LOC110489869
XM_021562800.2 mRNA upstream 326710 41694437 ~ 41710790 (+) False LOC110489853
XM_036948527.1 mRNA upstream 326710 41699259 ~ 41710790 (+) True LOC110489853
XM_021562780.2 mRNA upstream 495846 41539240 ~ 41541654 (+) False LOC110489834
XR_005036748.1 mRNA downstream 27161 42067004 ~ 42071284 (+) False LOC110489918
XR_005036747.1 mRNA downstream 27161 42067004 ~ 42092073 (+) True LOC110489918
XM_036948609.1 mRNA downstream 60447 42100290 ~ 42141745 (+) False LOC110489908
XM_036948603.1 mRNA downstream 60481 42100324 ~ 42141745 (+) False LOC110489908
XM_036948594.1 mRNA downstream 60490 42100333 ~ 42141745 (+) False LOC110489908
TU165213 other upstream 68183 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 68278 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 495909 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 3985756 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4093488 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 470487 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1691029 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1728864 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1759561 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1846753 43886596 ~ 43889609 (+) False G146165

Expression Profile