RNA id: XM_036948623.1


Basic Information

Item Value
RNA id XM_036948623.1
length 8377
RNA type mRNA
GC content 0.57
exon number 39
gene id LOC110489908
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42100290 ~ 42141745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAAATGAAGTAGACGTGCAACAATCTGCAATGCAGTCTGGGACAGCTGTAAACGGGATTGTTTGGGCTTTGTGAACCTGAAAGTAGGGCAGGTGTGGTTTTGATGGTAGTTTGTTATTCAATAATAAAGGTAAAGACATCGCTATCTCAGAATATGTAGGATACACGTTATTATCTGACCCGTGAGCGTTGTGTGCTTACTTGACAAGTGCCACGGTTTAACTGATTCGACGACAGGGGCCCGGCAACAGCAACACGGGCATTGCTATCACATACCGTTAGCTAGCAAGGATACATTTCCCACTGTGCCAATAGCGCagactgatttttttttcttccattcgTCAAGCTGGATAAATAATTTAGTGATAGAGGTTTTCAAATATCCTACTAACGGtgtgatgtgtgtatgtgagcTTGGTGTTGACAAGTAGCAGAATAACCACCCAGGAGGATGAATGCAGAGGAAGTGGAGCTGCTCAGTGACTCCAAGTACAGGAATTATGTGGCGGCGGTTGACAAGGCCCTCAAGAACTTTGAGTACTCTAGCGAATGGGCGGACCTCATCTCTGCACTGGGCAAACTCAACAAGGTTTTGCAAAGCAATGCCAAGTACCAGGTGGTGCCCAAGAAGCTGACGATAGGCAAGCGTCTGGCTCAATGCCTCCACCCAGCTCTGCCCAGCGGGGTGCATCGCAAGGCCCTGGAGACCTACGAGATCATCTTCAAGATCATAGGGCCCAAGAGGCTGGCCAAAGACCTCTTCCTCTACAGCTCTGGGCTGTTCCCTCTACTCTCAAATGCTGCTATGTCTGTGAAGCCGGTGCTGCTGGGCCTGTATGAGACATACTACCTGCCCCTGGGAAAGACCCTCAAACCTGGCCTGCAGGGGCTGCTGACTGGGGTCCTACCGGGCCTGGAGGAGGGCTCTGAATACTATGATAGGACCAACATGTTGCTGGAGAAGGTGGCTGCGGCAGTGGAGCAGTCGGCCTTCTACAGCGCCCTGTGGGGCAGCATCCTGACCAGCCCCGCCGTGCGCCTGCCCGGGGTCACCTTTGTCCTGCTGCACCTCAACCGCAAACTCTCCATGGAGGACCAGCTCTATGTCATGGGCAGCGACATTGAACTCATGGTGGAGGCAGTCAGCACGTCAGTGCAGGACTCCAGTGTTCTGGTCCAGAGGAGCACCCTGGACCTGATCCTCTTCTGCTTCCCATTTCACATGAGTCAGGCCACCCGTCCAGACATGATTCGGATCCTCTCTGCAGCACTGCATGTGGTTTTGAGGAGGGACATGTCACTCAACCGCAGACTGTACGCCTGGCTGCTGGGCCCTCGCAGCTCGCGACAGAGCAACCCTGAGGACCATGCTACCCAGTATTTCAATACCTACTCCAAGGACATGCTAGTCCAGGCAATGGTGGGGATCCTGCAAGGGAAGGCCCGAGGCGGGGAGGAGGAGAGCGTCCTGATGCATGACCTCAAGCCTTTCCGCATTCTCATCAGTCTGCTGGACAAACCTGAACTCGgacCAGCCATCCTGGAGGACGTTTTGATCGAGGTCTTCAGGACATTACACACACAGTGCCGAGCAGAGTTGGACCTGCAGAACCACAACCAATTCAGCAAGGACCATGCTCATCTCAGCAGCAAACTGCGAGAAAACAAGAAAACTGCAGAGCTTATCAAGACGGCCAATCTCCTGTTCAACTCTTTTGAGCCGTACTACATGTGGGACTATATCGCTCACTGGTTCGAGGACTGCTGCAGCAAGGCAAAGAATGGACCAGGGAATGCTGGGAGCACAGAGTCCTCAGGGCTCTCATTGGTGGAGTTCTGTCAGCTGGTGGACTTCCTACTGGACATTGTGTCcttgCCTACTAGAAGCATGAGGGTTATCTGCCAGGAGACCTACATAGAGATCCAGACGGAGCACCTTCCCCAGCTTCTGCTGCGCATGGTTTCTgccctgacctctcacctcccGGCCCTGGGCCTTGGGGAGCTCACCCACTGCCTGCGCCTCTGCTCTAAGATCCTCAGCAAGGTGCAGCCCCCCCTGGTGTCCCCCCTGTCCCTGCCCACGGGCCCCCTCGCCTCCACAGTCTCTGCTAAGGAGGAGAAACGGTCCCTGCCCTCTACTCTGGAGCTCCCCAGCGGCCAGGTGTTTGAGAACGGGGAGAACCCCAACAGCAGTCGCTCCTCCGAGAGTGGCTTCACCGATTTTGTCCAGTACCAGGCCTCTGAGGAACCAGCACTACCCACTCAGCCTTCCCTCAAGACGGGCTGCAGCGgctccctcccagtctcccagAACAAGCCGCAGGACAAGCCTGTCATGCAGTGCTGCCTGGAGCATTTCCAGCACTTCCTCTCCTGCCTGGTCACCCTTTACATCACCCCGGGGATGGTAGAAGGATCTGGGGGTGAGAGGAGCGAAGTTGTACGAACGGAACCATTGGGCGGCGCCCACCAGAACGGGAGTGATGTGGTTGAGGTGCCGGGGCAAAGGGAGTGTCTGGCGGCCTTTACTGCCGCCTGCCAGCTCTTCCTGGAGTGCTCCAGCTTCCCCGTCTACATCGCCGAGGGCAACCTCAAGTCCACGCCCCCGCCTAAGGAGCAGACTGACAGCGAGCAAGTGTGTCCTGCCGTGTGGTTGCAGACCTTGATGGACGCCTGCTGCCTGGCCAGTGACTTCAGCGTCCAGGGCGTGGCCATCTCCCTGGTCATGGACCTGGTGGGCCTCACCCAGTCTGTCGCCATGGTCACTGCCGAGGGCAGCATTGCTGGTGGCAACCCAGACTCCACCCAGCCCATGAGCCCTAGCCAGGGCCGTGTTGCTGTGGTGATCAGGCCACCACTCACACAGGGAATCCTGAAGTACATCGCAGAGAAGACCGACTTCTTCAAGaGTGTGGCCCTTATCCTGTGGGGACAGTTGGGGGAGGGGACCCCTCAGCACCACCAGCGCAGTGTGGAGCTCTTCTACCAGCTCCACAACCTGGTGCCCTCCTCCAGCATCTGTGAGGACGTCATCAGCCAGCAGCTCATGCACAGAGACAAGaaAATCCGTCTTGAGGCCCATGTGAAGTTCTCTGTGCTTTGGCATCTGACCAGAGACTTGAACATCACCAAGTCTTCCCCTTTCAACCGCACCTTTGACAGgtctctgTTCATCATGCTGGACAGTCTAAGTTACTGGGATGCGTCAGCCAGCGCAGTGGGCCGGGCCTGGCTCAACCAGGTGCTCCAGAGGCACGACATCGCCCGGGTCCTGGAGcccctcctgctgctgctgttgcacCCCAAGACCCACCGTGTGTCCATCCAGCGCGTCCAGGCCCAGCGCCACTGGGCCCAGGCATTCCCTAACCACAACCCCCAGGCCGAACAGGACCCCTCAGAACCCATCTACATGAGAGACTCGGGAATCTCTGACAACTTCAACCAGATGCCTTTGAAGTCAGGGCTCCGAGGGCTGCCGTTGAGCGACATGGAGCCCTTCTGCCTGACAGTCAACCCTCTGAGTGACAGCCTGTCCCTGCTCAGCCTGAGCAGTGAGAACCTGGCGCTGAGCGGTGATTACCATCCTCCTGACCAGCAGGGGGAACCCCACCTCCACGGCTCTGAGTCCAGCggctcccactcctcctccataGACAATGGCAGCTTCGAGGACCCAGACGGCACCTGCAGCACCGTGAACGGATTAGGATCTGACCAAGTCCCTGTCCTTATAGAGTCCGACAGTATGGTTCCTGATGAGGAGGATTCACTCGAAGAGGTTGTGTTGTCGGTGTTAAATGAGTTGATAGACAGGGTGGTGGGTATGGGAGAGGATGAGGGGCCACCTGAAACGCCGTCCCCCCCTGAAGCGTGGGTGCAAACGGACTCCGATAGCTCCTCATCAGACACGCAGGCCGGTCTTCGGCTCGATTCGGGCCCCCACGCCCCCTCCCACCGTCTCGAGATGTTAGCAGGAGGCACCCTGGGGTTCTTCCATGTCACCCCACCGGACCAGAcaggggaggagtgggagaggcaCCGCGAGGGCATCACTCGCCACAGCTCGTCCCCCTCCATCGTGACCCTGCCGGACAGCTCGGGCCCGGCCTCCCCTCACGACCAGAACCTCCGCTTGGACGTCGTGGACCTGCGGGCCCGTAAGCGCTCCCACAGTAGCACCCAGCTCAGCCTCAAGGGTAAGATCATGGAGCGTCTGCAAGACAAGTCCCCCGGCGCCAAGCCCAAGGTGAAGAAGAgcaagaggaaggaggaggagaggctgaggaAGGCCCTGCAGGCCGAGAAGCTCCGGCCGCCCAGGCTCTTCTTCGGAGACAGCCTGGATCTGGAGAATTGGTACAGCTGCGGAGAAGGTGAGGTGTCCGAGATCGAGAGTGACACCAGCTCGCCGAGTGGGGGCGGAGGGGTGAGCGGGGGAAATGGTCCCAACGGGAGAGTGGAGCGTAGAGCTTCCGCCTCGCCGCCTCAGTTCAACATCCACCCCCTCTACCAGCACGTGCTGCTCTACCTGCAGCTGTACGACTCATCCCGCACACTGCACGCCCTTTCGGCCATCGCCGCCATGCTGCGGGCAGCGCCATCGGACTTCGTGGACGCCATCTCCACCACCAGCATCAACAACACCTACACGCCCCAGCTGTCACTGCTGCAGAACCTGCTGGCACGCCACCGCGTCTCCGTCATGGGTAAGGACTTCTACTGCCCCATCTCCCAGGACAGCCACTCCCACTCGTTCCGCAGCGCCATGTTCCTAGAGATCATCATCTCCCTCTGCCTGTACTTCCTGCGCTCCTACTACTCTGCCCACGTGGGCACGGCCGCCACCGACCTGGCGGGCAACCGGGCCATGCAACTGACCAGCTTGGAGGTCCTCACCCTTCTCTTCAGCGAGCTGTCCAAGGTGACCGGCGGCTCGGCCAAAGGCTTCGCCAGCTTCATCAGCGATGTGCTGTCCAAGTGTAAGGTCCAGAAGGTGGTGCTCCACTGCCtgctctcctccatcttctcgGCCCAGAAATGGCACGAGCAGCGGGCGGCCGGCGTCAACGTGGCCTCCCAGGAGGAGGGTCTCTCAGAGGACAGCGTAATCAACCTCTCTGAAGATCAGATGGACGGCTGCAGCGCCGTTCAGTCCCAGCTGCTGAGGCTTCTCCAGAGCCTGGTGGTGCTGGAGCACAGGGTCCTAGTACCCGCCGAGGAGGGCGGCGACGGGGGGCCCGTGGTCGTCCCGGGGGGTGTAACATTAGGTGTTGTAACATTAGGGACGGGTAGCGGGGCAGGGACGGGCTTCGAACTGCTGGGAGGTGAGGTGGAGCACATGAACCCACAGCAGCCAATGACGTCGCTGCAGTACCTTCACGGGCAGCCTATCACGGCGCAGGGCATGTTCCTGTGTGCGGTGATCCGGGCGCTGCACCAGCACCATGCGTGTAAGATGCACCCGCAGTGGATCGGCCTGATCACGGCCACGCTGCCCTACATGGGCAAGGTACTGCGCAGGGTGGTGGCCTCAGTCACACTGCAGCTCTGTAGGAACCTGGACAACCTCATTCAGCAGTACCGCTATGAGACCGCCATCACAGACACCAGACCTCAGTGGATGGCCCTGTGCATCCCCCCAGATTTGATTCTAACAGTACTGGAAGGAGTGACCGCTATCATCCACTACTGTCTACTGGACCCATCCTCCCAGTACCACCAGCTGCAGGTGAGTGTGGACCAGAAGCACTTGGCGGAGGCTCGCTCAGGGATCCTGTCCATCCTCCACACCATCATGTCCTCCGTCACCCTGCTGTGGAGCGTCCTGTACCAGGCCGACAGCTCTGACCGGCCAGCTGCCGCCTCCGCTGCATCCACTTCCAACATCAACCTGGGATCCACCAAGaACTTGCGTCAGCAGATCCTGGAACTGCTAGGCCCCATCTCCATGAACCACGGAGCCCACTTCATGGCAGCTATCGCCTACGTGTGGAACGAGAGGAAGCAGGTCAAGACCACTGCCGCTTACAAGgtgatccCCACTGCCAGTgaggagcagttgttgttggtggAGCTGGTGCGGTCGGTCAGCGCCATGCGTACCGAGACCGTGATGCAGACGGTCAAAGAGGTCCTGAAGCAGCCGCCGGCCATCGCCAAAGAGAAGAAGCATCTGTCTCTGGAGGTGTGCATGCTGCAGTTCTTCTATGCCTACGTTCAGAGAATCCCTGTGTCCAGTCTGGTGGACAGTTGGCCGTCTCTGCTGGCACTGCTGAAGGACTCGATACAGCTGGGGCTGCCTGCTCCTGGACAGTTCCTCATACTGGGAGTTCTGAATGAGTTCATCCTCAAGAACCCAAACCTAGAGAGCAAAAAGGACCAGCGGGAGCTGCAGgatgtGACCCACAAGGTGGTGGAGGCCATCGGCACCATCGCAGGCTCCTCTCTGGAGCAGACCACCTGGCTGAGGAGGAACCTGGAGGTCAAGGCCTCACCACAGATCATGGTGGACGGGACTAGCCTGGAGCAAGACGTAGAGGatctAATGCTCACAGTGATGGAGGCGTCCAGCTTTACTCCATCTGTGTACAGCGTTCACGCCCTCACACTGCTAGCGGAGGTGCTGGCCCATCTCCTAGACATGGTGTTCTACAGTGACGAGAAGGAGAGGGTGATCCCTCTACTGGTGAACATTATGCACTATGTCGTGCCCTACCTCCGCAACCACAGTGCCCACAACGCCCCCAGCTACCGGGCGTGTATCCAGCTGCTGAGCAGCCTGAGTGGGTACCAGTACACCCGGCGGGCCTGGAAGAAAGAAGCCTTCGACCTTTTCATGGACCACACCTTTTTCCAGATGGATTCGTCCTGTGTCAGCCATTGGAGAGCCATCATTGATCATCTTATGACCCACGACAAGACCACGTTTAGAGATCTTATGACTCGTGTGGCGGTGGCTCAGAGCAGCTCTCTGAATCTGTTCTCTAACCGAGACGCAGAGCTGGAGCAGAGAGCAATGCTGCTCAAACGCCTAGCCTTCACCATCTACAGCAGCGAGGTGGACCAGTACCAGAAATACCTACCTGACATACAGGAGCGGCTGGTGGAGAGTCTGCGTCTGCCCCAGGTGCCCATCCTCCATGCCCAGGTGTTCCTGTTCTTCAGAGTTCTACTGCTGCGCATGTCTCCTCAACACCTCACCTCACTGTGGCCCACCATGATCACTGAACTGGTTCAGGTCTTTTTACTCATGGAGCAGGAGCTTACTGCAGACGAGGACATGTCAAGGACGTCAGGTCCATCGGTGGCTGGCCTGGAGACCACCTACTCTGGAGGGAACGGTTTCTCCACCTCCTACAACAGCCAGCGCTGGCTCAatctctacctgtctgcctgcaAACTGCTGGACCTGGCCCTGGCACTGCCCTCAGAGAGCCTGCCCCAGTTCCAGATGTACCGCTGGGCCTTTATCCCCGAGGCATCTGATGACTCGGGTCTGGAGGTGAGACGACAGGGGACCCACCAGCGAGAGTTCAAACCCTATGTTGTCCGACTAGCCAAGCTGCTGAGGAAACGAGCCAAGAAGAACCCAGAGGAGGACTGTTCCCTGCGTACTCTGTCCTGGGAACGGGGCCACCTCACCCTGACACTCTACATGATCCGCAGCATGGAGCAGCTCCTCCCTTTCTTCAACCTGCTCAGTCAGGTGTTCAACAGTAAGGCCAGCAGCCGCAATGGCCCCACCCACACCACCGCCCCTAGCCACTCTGGCAACTCCTTCCCCAACAAGGAGGGCAAGCTGGAGAGCCAGAAAGTGTTCTGGAGCCGGGCACGGCAGAACATTGAGGAGATGGTGGAGAAAGACTTTCTAGAGGGCCTTATCAAGACGTGAATATGAGGGACAGAGGGAAATGTATTTTCCCAAGCGATATATATTAATAAAACTAATCTTGTATATAATGGAACATATTAGGGACATAAACCATGGGAACTAAAAATGAATGAAGtttgtacattttttttctcttttttgtaTTTATGACTGTATTTTACTTTTCAAAGGCTTTTAATTATTTGTATATACAGGGCAGCTGTGAAGACTGTCTTTGGCAGTTTGTGTATGCCCTCTGGGACAATGTGAAGATGCTGTGCAATTCTATATTGTTGTGACTTACTGAATTAAAGGCATCATGAGATCCACATGCCCTGTGTGTCTCGGTCTCACCATCACCATGGACAGACATGTTATTTGAAATGTTTAAAGCATCATAGAGTGGAAAGCTCTTAAAAGTCcagtgcagctgtttttatctcaatatcacaTTTCTGTTtagcaattaagtaccttactgtgattgttttcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165321 lncRNA upstream 9418 42090612 ~ 42090915 (+) True G144017
TU165320 lncRNA upstream 10803 42089290 ~ 42089530 (+) True G144016
TU165316 lncRNA upstream 16219 42083621 ~ 42084114 (+) True G144012
TU165258 lncRNA upstream 26345 42072815 ~ 42073988 (+) True G143977
TU165230 lncRNA upstream 97090 42002451 ~ 42003243 (+) True G143953
TU165482 lncRNA downstream 243453 42385198 ~ 42385672 (+) True G144176
TU165972 lncRNA downstream 260153 42401898 ~ 42402244 (+) True G144629
TU165977 lncRNA downstream 263132 42404877 ~ 42405121 (+) True G144634
TU166062 lncRNA downstream 342096 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA downstream 342096 42483841 ~ 42486432 (+) True G144706
XR_005036747.1 mRNA upstream 8260 42067004 ~ 42092073 (+) True LOC110489918
XR_005036748.1 mRNA upstream 29049 42067004 ~ 42071284 (+) False LOC110489918
XM_021562883.2 mRNA upstream 60490 42037500 ~ 42039843 (+) True LOC110489902
XM_021562836.2 mRNA upstream 273500 41750039 ~ 41826833 (+) True LOC110489877
XM_021562824.2 mRNA upstream 358423 41730685 ~ 41741910 (+) True LOC110489869
XM_021562946.2 mRNA downstream 8585 42150330 ~ 42215814 (+) False LOC110489919
XM_021562952.2 mRNA downstream 8586 42150331 ~ 42215814 (+) False LOC110489919
XM_021562971.2 mRNA downstream 8586 42150331 ~ 42215814 (+) False LOC110489919
XM_021562938.2 mRNA downstream 8586 42150331 ~ 42217775 (+) False LOC110489919
XM_021562979.2 mRNA downstream 30601 42172346 ~ 42215814 (+) False LOC110489919
TU165213 other upstream 131016 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 131111 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 558742 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4048589 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4156321 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 368585 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1589127 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1626962 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1657659 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1744851 43886596 ~ 43889609 (+) False G146165

Expression Profile