RNA id: XM_021562946.2


Basic Information

Item Value
RNA id XM_021562946.2
length 3433
RNA type mRNA
GC content 0.57
exon number 30
gene id LOC110489919
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42139048 ~ 42220203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTgagataataaataaataaatgaacaaacaAGGCAAATCCACCGAAACGCCACCATCCTCTTCCTCAGTTTCAAGCATCGTCGGTGGTGATCAGTGGATCACTGGGAGGAAGAACGACACTGTTATTTAATGGCCCATAAATTGAGAAGCGAAATAGTTGGCTGAAAAACTGGGGGCCTTAACGAGGAATATAGTCCTTCGCTGGAAGAGAGAAGGACGCGTTGTTGGTCGAGCATCATCCACAGCGAACCATCATTTTATAAGGAGGAGACCATCCAAACCGTTACATGGATTTTTAAGGGCAGTCTGGAATACCACGACTGGTTGTGCTTTGGGGGGGACCATTTTTGACGTTTGATTCGTGAGGTTTGACGCCACGGAGAGAAGATGTCGGGGCAGACGCTGACGGACCGCATCGCCGCGGCGCAATACAGCTTAACGGGATCGGAGGTTGCTCGAGCTGTTTGCAAAGCCACCACTCATGAGCAGACAGCACCCAAGAAAAAACACCTGGAATACCTGATTGAGGCCACCAAGGAGTCTAATGTGAACATCCCACAGATGGCGGACACGTTGTTTGAGAGGGCCACCAATGCCAGCTGGGTGGTGGTGTTCAAGGCCCTGATCACTACACATCACATGATGGTCGCTGGCAATGAGagGTTCCTCCAGTTCCTTGCCTCCAGGAACACCCTCTTCAACCTCAGTAACTTTCTGGACAAAACTGGCTCCCATGGCTACGACATGTCCACGTTTATCAGACGCTACAGCCGGTACCTCAACGAGAAGGCGTTCGCCTACAGACAGATGTCCTTCGACTTTGGCAGAGTGAAGAAGGGagctgaGGGGGTGATGAGGACGATGCCCGTAGAGAAGCTGTTGAAAGGAATGCCCACTCTGCAGAGCCAGATAGACGCCCTGCTGGAGTTTGATGTCCATCCCAATGAATTGACCAATGGGGTGATCAACGCGTGCTTCCTCCTGATGTTCAAAGACCTGATCAAGTTATATGCCTGCTACAATGACGGGATCATCAATGTATTAGAGAAATTTTTCCAGATGAAGAGAGGACAGTGCAAAGACGGGCTGGAGATCTACAAGAGATTCTTGACACGGATGACCAGGGTTTCTGAGGTCTTCAAAATTGCTGAGACCATAGGAATTGACAAAAATGATATCCCGGAGCTCACTCAGGCCCCTGAGAGTCTCCTGCAGTCCCTGGAGACTCACCTGAACACTCTGGAGGGGAAGAAGCCAGAGGATGTTCACAGAGACGATGTGTCACCAACCAAGGAGTGTGAAGCAAATGGCTCCCCGGCCGCAGCCGCCACGCCTACAAAAGCTCAAGCGGCccctgcagctgctgctgctcctgttgcTCCTGCCCGCCCTGGACCACCTGCCAGACCCACGGCGGCACCCACCTTCAAGGGCTCCAACAATGCTCTGCTAGACTTGGATCCATTGTCAGCCTCCCCATCAGCAGGTGGAGCAGCAGCCTCTATCTCGTCATGGGGAGATCTGCTTGGTGGCGGTTTAGATACCCCCCCTGATCCCACTAGCACCTCTGAGCCAgccgctgttgctgctgctgatgCTGCAGCTGGTCCAGCTTCCACGCCCACAGTGGCCCATACGGATGGCCCCGCCGCGCCCTCTGTGGTCCCTGTGGTGGTGCTGCCCGTGCCCGCCACTACCGCCTCAGACATGGATCTGTTCGGAGATGCGTTTGCACCCTCCCCAGGTGACGGCCCGCCCAGCAGGGCGCCTGCTGCTGATGCATGTGCCGGATCTGACCCCTTCGCTCCATCGGAGGGGAGTGCGAACTTGGCTCCAGAGATGGACCTCTTTGCTATGAAGTTCGATAACACGCTGGCTGCCCCAGAAGCAGCCAGCCCCACCTCTAGCGCAGTGCCGATCATCGTCGCCCCCATCGAGCCCCCTGCTGCCGCCCCCgctccctccactaccaccactgAGTCTGCAGCCGCCCCCGCCCCTGCCGTCCCCACTCTAGACCTCTTTGGTGATTCTATGTTTGATTCTATTCCTGAGAAAAGCCCTACCGCAGAAAAAGATGATGCTGCTGTTACTCCTAGCGTAGACCTATTTGGGGCAGATCTCCCTACTATCTCTCGCGGGCCCTCTCCTTTGCCTCCCGAGGCCAATGCTGATGAAGACCTCTTGTCTGGTGTGACTGATGCATTCTCTGCTATGGCTCCAGCACCAGCAGTGGCTCCAACTCCAGCTCAAGCCCCGGCACCAGCTCCAGCTCCTGCACCAGCTCCAGCTCCTGCCCCTGCAACGGTCTCTCCTCCCAAACCTGAGCCCTCTGCACCTGCACCTGTCATTGATCTGCTGGACACATTCAGTTGTCCTGCTCTGTTGGACGCTACGCCCGCTGCCCCCGGGGGACCAGGAGAGGATCTGTTGGgtgGACTGATGTCTCCTAGCCTGGCTCCCACGGCAGCCCCTGCTCCTTTGGCCCCCGCTTTGGCCCCGGCCCTCGCCCCTACGCTGGCTCCTGTCTCAGCCCAGAATGACTTGCTGGAGTGTGGCTTCGACACCCTCGGCTCCCTACCCCCACTAATGCCCGCCACACCAGCAGCTGCAGACACAGTGCCGGCCTCAGCAGCACCCTCTGGTGGCTTTGATGCATCAGGGGACATACTGATGCCAGCCATAACACCCCAGTCCACTGGGGGTAGTGTGGGCAGCACTGGCAGTGGTGGGGTCAGTACCAAGTTTACACCCGCGGTCGGGGTTGCCATGACAGGCGCCACAGCTATTAAACGGCCATCCATCGGGGGCGACTTGGACTCCTCCCTGGCAAACCTGGTTGGAGATCTGGGGATTCAGAAAAAGGACCATCAGTGGAATGAGAAGAAGCTGACAGGAGGATCTAACTGGACCCCCCAGGTAGCCCCTCCCAGCTGGGGCGCTCCTGGACCTATGATGGGTGGCCCCGCCCCTGGAGCCCCTGGTGCCCCTGGAGCCATCCCTCCGCCCATGGGAGCACATCCTGGCTTTAGCATGGCCTCAGCAGCTGGATCTGGAGTTCCCATGATGCCTCCCATGATGATGGGACAGCCAATGATGGGTCAACCCATGAGACCACCCCTGCCAGGAGCTGCAGCACCAGGGGCACTGCTGTCTTCAGGACCTGCTGCCACCCAGAGCAAAAAGCCCAAGGACCCACTGGCAGACCTCAACCTCAAGGACTTAATGTAAATCCCCCAGCCCAGCTCTTGTTTTTCTGGAGCTGGGCCCTCTGGCCGCCTGTCTTATTTCGGCGTTCTCTACAACCTGGGACACCAGAGACCCTCCTCAGCTACTCACCCATAGGAGACCCCCTTCCTCCACCCCATCCCAGCCCCCTGTGTAATGTTGTAGCACAAACTGTGAAAGTGACACCTTAAGTGAGGAAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165338 lncRNA upstream 11316 42138760 ~ 42139014 (+) True G144034
TU165321 lncRNA upstream 59415 42090612 ~ 42090915 (+) True G144017
TU165320 lncRNA upstream 60800 42089290 ~ 42089530 (+) True G144016
TU165316 lncRNA upstream 66216 42083621 ~ 42084114 (+) True G144012
TU165258 lncRNA upstream 76342 42072815 ~ 42073988 (+) True G143977
TU165482 lncRNA downstream 169384 42385198 ~ 42385672 (+) True G144176
TU165972 lncRNA downstream 186084 42401898 ~ 42402244 (+) True G144629
TU165977 lncRNA downstream 189063 42404877 ~ 42405121 (+) True G144634
TU166062 lncRNA downstream 268027 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA downstream 268027 42483841 ~ 42486432 (+) True G144706
XM_036948609.1 mRNA upstream 8585 42100290 ~ 42141745 (+) False LOC110489908
XM_036948603.1 mRNA upstream 8585 42100324 ~ 42141745 (+) False LOC110489908
XM_036948594.1 mRNA upstream 8585 42100333 ~ 42141745 (+) False LOC110489908
XM_036948623.1 mRNA upstream 8585 42100333 ~ 42141745 (+) False LOC110489908
XM_036948631.1 mRNA upstream 8585 42100333 ~ 42141745 (+) False LOC110489908
XM_021563003.2 mRNA downstream 36123 42251937 ~ 42383957 (+) True LOC110489963
XM_021563049.2 mRNA downstream 313267 42529081 ~ 42572673 (+) False LOC110489991
XM_021563058.2 mRNA downstream 313267 42529081 ~ 42572673 (+) True LOC110489991
XM_036948784.1 mRNA downstream 366545 42582359 ~ 42592552 (+) False LOC110489996
XM_036948800.1 mRNA downstream 366545 42582359 ~ 42592552 (+) False LOC110489996
TU165213 other upstream 181013 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 181108 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 608739 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4098586 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4206318 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 294516 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1515058 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1552893 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1583590 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1670782 43886596 ~ 43889609 (+) False G146165

Expression Profile