RNA id: XM_021562938.2


Basic Information

Item Value
RNA id XM_021562938.2
length 5408
RNA type mRNA
GC content 0.50
exon number 30
gene id LOC110489919
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42139048 ~ 42220203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TgagataataaataaataaatgaacaaacaAGGCAAATCCACCGAAACGCCACCATCCTCTTCCTCAGTTTCAAGCATCGTCGGTGGTGATCAGTGGATCACTGGGAGGAAGAACGACACTGTTATTTAATGGCCCATAAATTGAGAAGCGAAATAGTTGGCTGAAAAACTGGGGGCCTTAACGAGGAATATAGTCCTTCGCTGGAAGAGAGAAGGACGCGTTGTTGGTCGAGCATCATCCACAGCGAACCATCATTTTATAAGGAGGAGACCATCCAAACCGTTACATGGATTTTTAAGGGCAGTCTGGAATACCACGACTGGTTGTGCTTTGGGGGGGACCATTTTTGACGTTTGATTCGTGAGGTTTGACGCCACGGAGAGAAGATGTCGGGGCAGACGCTGACGGACCGCATCGCCGCGGCGCAATACAGCTTAACGGGATCGGAGGTTGCTCGAGCTGTTTGCAAAGCCACCACTCATGAGCAGACAGCACCCAAGAAAAAACACCTGGAATACCTGATTGAGGCCACCAAGGAGTCTAATGTGAACATCCCACAGATGGCGGACACGTTGTTTGAGAGGGCCACCAATGCCAGCTGGGTGGTGGTGTTCAAGGCCCTGATCACTACACATCACATGATGGTCGCTGGCAATGAGagGTTCCTCCAGTTCCTTGCCTCCAGGAACACCCTCTTCAACCTCAGTAACTTTCTGGACAAAACTGGCTCCCATGGCTACGACATGTCCACGTTTATCAGACGCTACAGCCGGTACCTCAACGAGAAGGCGTTCGCCTACAGACAGATGTCCTTCGACTTTGGCAGAGTGAAGAAGGGagctgaGGGGGTGATGAGGACGATGCCCGTAGAGAAGCTGTTGAAAGGAATGCCCACTCTGCAGAGCCAGATAGACGCCCTGCTGGAGTTTGATGTCCATCCCAATGAATTGACCAATGGGGTGATCAACGCGTGCTTCCTCCTGATGTTCAAAGACCTGATCAAGTTATATGCCTGCTACAATGACGGGATCATCAATGTATTAGAGAAATTTTTCCAGATGAAGAGAGGACAGTGCAAAGACGGGCTGGAGATCTACAAGAGATTCTTGACACGGATGACCAGGGTTTCTGAGGTCTTCAAAATTGCTGAGACCATAGGAATTGACAAAAATGATATCCCGGAGCTCACTCAGGCCCCTGAGAGTCTCCTGCAGTCCCTGGAGACTCACCTGAACACTCTGGAGGGGAAGAAGCCAGAGGATGTTCACAGAGACGATGTGTCACCAACCAAGGAGTGTGAAGCAAATGGCTCCCCGGCCGCAGCCGCCACGCCTACAAAAGCTCAAGCGGCccctgcagctgctgctgctcctgttgcTCCTGCCCGCCCTGGACCACCTGCCAGACCCACGGCGGCACCCACCTTCAAGGGCTCCAACAATGCTCTGCTAGACTTGGATCCATTGTCAGCCTCCCCATCAGCAGGTGGAGCAGCAGCCTCTATCTCGTCATGGGGAGATCTGCTTGGTGGCGGTTTAGATACCCCCCCTGATCCCACTAGCACCTCTGAGCCAgccgctgttgctgctgctgatgCTGCAGCTGGTCCAGCTTCCACGCCCACAGTGGCCCATACGGATGGCCCCGCCGCGCCCTCTGTGGTCCCTGTGGTGGTGCTGCCCGTGCCCGCCACTACCGCCTCAGACATGGATCTGTTCGGAGATGCGTTTGCACCCTCCCCAGGTGACGGCCCGCCCAGCAGGGCGCCTGCTGCTGATGCATGTGCCGGATCTGACCCCTTCGCTCCATCGGAGGGGAGTGCGAACTTGGCTCCAGAGATGGACCTCTTTGCTATGAAGTTCGATAACACGCTGGCTGCCCCAGAAGCAGCCAGCCCCACCTCTAGCGCAGTGCCGATCATCGTCGCCCCCATCGAGCCCCCTGCTGCCGCCCCCgctccctccactaccaccactgAGTCTGCAGCCGCCCCCGCCCCTGCCGTCCCCACTCTAGACCTCTTTGGTGATTCTATGTTTGATTCTATTCCTGAGAAAAGCCCTACCGCAGAAAAAGATGATGCTGCTGTTACTCCTAGCGTAGACCTATTTGGGGCAGATCTCCCTACTATCTCTCGCGGGCCCTCTCCTTTGCCTCCCGAGGCCAATGCTGATGAAGACCTCTTGTCTGGTGTGACTGATGCATTCTCTGCTATGGCTCCAGCACCAGCAGTGGCTCCAACTCCAGCTCAAGCCCCGGCACCAGCTCCAGCTCCTGCACCAGCTCCAGCTCCTGCCCCTGCAACGGTCTCTCCTCCCAAACCTGAGCCCTCTGCACCTGCACCTGTCATTGATCTGCTGGACACATTCAGTTGTCCTGCTCTGTTGGACGCTACGCCCGCTGCCCCCGGGGGACCAGGAGAGGATCTGTTGGgtgGACTGATGTCTCCTAGCCTGGCTCCCACGGCAGCCCCTGCTCCTTTGGCCCCCGCTTTGGCCCCGGCCCTCGCCCCTACGCTGGCTCCTGTCTCAGCCCAGAATGACTTGCTGGAGTGTGGCTTCGACACCCTCGGCTCCCTACCCCCACTAATGCCCGCCACACCAGCAGCTGCAGACACAGTGCCGGCCTCAGCAGCACCCTCTGGTGGCTTTGATGCATCAGTGTTTGGCGGATTAGGGGACATACTGATGCCAGCCATAACACCCCAGTCCACTGGGGGTAGTGTGGGCAGCACTGGCAGTGGTGGGGTCAGTACCAAGTTTACACCCGCGGTCGGGGTTGCCATGACAGGCGCCACAGCTATTAAACGGCCATCCATCGGGGGCGACTTGGACTCCTCCCTGGCAAACCTGGTTGGAGATCTGGGGATTCAGAAAAAGGACCATCAGTGGAATGAGAAGAAGCTGACAGGAGGATCTAACTGGACCCCCCAGGTAGCCCCTCCCAGCTGGGGCGCTCCTGGACCTATGATGGGTGGCCCCGCCCCTGGAGCCCCTGGTGCCCCTGGAGCCATCCCTCCGCCCATGGGAGCACATCCTGGCTTTAGCATGGCCTCAGCAGCTGGATCTGGAGTTCCCATGATGCCTCCCATGATGATGGGACAGCCAATGATGGGTCAACCCATGAGACCACCCCTGCCAGGAGCTGCAGCACCAGGGGCACTGCTGTCTTCAGGACCTGCTGCCACCCAGAGCAAAAAGCCCAAGGACCCACTGGCAGACCTCAACCTCAAGGACTTAATGTAAATCCCCCAGCCCAGCTCTTGTTTTTCTGGAGCTGGGCCCTCTGGCCGCCTGTCTTATTTCGGCGTTCTCTACAACCTGGGACACCAGAGACCCTCCTCAGCTACTCACCCATAGGAGACCCCCTTCCTCCACCCCATCCCAGCCCCCTGTGTAATGTTGTAGCACAAACTGTGAAAGTGACACCTTAAGTGAGGAAAAAACAAGTGTGTGCTTAACTAGATGTAACCTTTTGTCTAAACAAAACCacacaaaacatatttaaaaaaaaatgtctatcAAAGCAAGCCAGAAACCCGAGCGGAAGCTGAAGGCGTATGTGCTGTATGTATTTAGATCATTTTTTCCAGTAGTGTTGGCGTGTTGAGTTGAATGATGGATGCGTGTTTGTTTGATGCCCTCAACTCCACCTTCGGCCCTGCACTGGCCTTCTGATCACTCAAGAGAGGAGGGGGTTCCACCCTGCCTCACCCTGATTGGATAAGAAGGGTAAGCAAAGCAGCCCTGTCATTTTTGGATGAAACGTGCAATGTGTCGTTTGCAGAAGTTCTTCTTTGTTGTTGTATATACATTACGCATCTTTAAGGATTCTGTCTACTCTGTATGTCTGTGGAAGAGCATATTGATGTGAATCTGATATCAAATTGTAAGAAGTCATGTGACCATTATCTTATTTCCCGTCATCTTTTGAACGTATTTAGAAACAAATATGATATGAGTATATGATTAATATGAATAAGCAACATGTACGGGCTCCTGAATCCTAAATGACCATCcaatgattttttaaaattatatttattAGTTTTTTTGTCAGCGcttatttttctatttatttattttttagattttGCGCATCGTGTCCAGCTTTATttgtattttctctctctgttgacATTGTTTGCGAATCTGCTATAAAACATTGTCGGATATTTTTTACCAACAGATCGTATCTTATCGCTTATTTACAGAGAAAATGTGTTTTCCTAATCCTATTCAAGATAAAGGTCAAAGAGTGTATATCAGGAGCCAGATGTTGCCAGTACCTCATATCTCAATACAGAGGACAACAGTCTTTTGTTAAACCACTAAAACAAGTTGTGTACAGTTAGTCTACTTCCTGGTATCAGCGGCACTCTCCCTATGGACCTATCACTGTCCTCCTCATCAGTGGTCTGTTGTTTGATTTTCATAATTGCTCATactttattattatcattattactatAACTAGACCACGGTTAGGTACTGGATATGtagtgttatttttgtatttgagaAGAAACATACATCCTTGTCTCCCTATTCCCCCACCCCAGAATTTGTTACATATTTCTGTTCCGTTTCCTCCCCCATTGTTAATGAATCAGTAATATTGTACATGGTAGCATGGGCGGAGAGGAGAGCCTGTGTATACCCAGTCAAAAGAGGACACTGTTGAACAGTGTGGCTTCCATGTATATCTAGGCAGCTGTTTAGAACCAGTGAAACCAGTCCTGTGCTGTACAGCCCCAGATATAACAGATCATTTGTTGTGTCATTGCAAGACTGTTTCGACAATTGTTGTGGGAAAAAATATGGATTGAAAAATGGGAAAACATGCTTTTTTTCATTATtgagttacatttttttttaaatatcttattattattatttactatgCCCCTCCCCAGTGCATGTAAGCCCTTTGAGATGCAATAAACTCAATGATGGAAAGAATCGCCCATTAATGATCGCCAATCCTTTTCTCATGTTGATAGACCAGATCATGGACACATTGCATTTTTAATCTGGTGCACTAATTGTCATGACATTGTAAGGCCTTTCTTGGGTTGTGTTCGTTAGGGCGCACAactgaaaacattttaaaatgtaaatgactgtttcttattggacaggtCCAAGTAGTCCCTccatgtttcagtctgttttcttccatttgttgCCTAATGATCATGACCCTGGCTACAGGCATAGATGTGtcatagatacatacatacatcactTCTCCTCACGGGAAAATGAAAACACACATACAAGTTGTAATCTTGGTTTAATTGTTGTTTTTTCAATCATGGTGAAATGTTATTCATTTAATGTATTTTGTCATCAATGGCAAACTCGTATAAATTGTGGCACATAATAAACCAGATTCATCAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165338 lncRNA upstream 11317 42138760 ~ 42139014 (+) True G144034
TU165321 lncRNA upstream 59416 42090612 ~ 42090915 (+) True G144017
TU165320 lncRNA upstream 60801 42089290 ~ 42089530 (+) True G144016
TU165316 lncRNA upstream 66217 42083621 ~ 42084114 (+) True G144012
TU165258 lncRNA upstream 76343 42072815 ~ 42073988 (+) True G143977
TU165482 lncRNA downstream 167423 42385198 ~ 42385672 (+) True G144176
TU165972 lncRNA downstream 184123 42401898 ~ 42402244 (+) True G144629
TU165977 lncRNA downstream 187102 42404877 ~ 42405121 (+) True G144634
TU166062 lncRNA downstream 266066 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA downstream 266066 42483841 ~ 42486432 (+) True G144706
XM_036948623.1 mRNA upstream 8586 42100333 ~ 42141745 (+) False LOC110489908
XM_021563003.2 mRNA downstream 34162 42251937 ~ 42383957 (+) True LOC110489963
XM_021563049.2 mRNA downstream 311306 42529081 ~ 42572673 (+) False LOC110489991
XM_021563058.2 mRNA downstream 311306 42529081 ~ 42572673 (+) True LOC110489991
XM_036948784.1 mRNA downstream 364584 42582359 ~ 42592552 (+) False LOC110489996
XM_036948800.1 mRNA downstream 364584 42582359 ~ 42592552 (+) False LOC110489996
TU165213 other upstream 181014 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 181109 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 608740 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4098587 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4206319 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 292555 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1513097 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1550932 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1581629 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1668821 43886596 ~ 43889609 (+) False G146165

Expression Profile