RNA id: TU165295


Basic Information

Item Value
RNA id TU165295
length 1791
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110489919
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42139048 ~ 42220203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagttggaggccccgctgcacaactgagcaagaggacaagtacattagtgtctagtttgagaaacagacgcctcacaagtccttaactggcagcttcattaaatagtacccacaaaacacttgtctcaacgtcaacagtgaagaggcgactctgggatgctgtccttttagtttccagctacaatagtgatttacaacattaacaatgtctacactgtatttctgatcaatttggtattttaatggaccaaaaatatttgcttttctttcaaaatcaaggccatttctaagtgaccccaacttttgaactgtagtgtaaatataatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaataccttTTTCTTTAcacagttgaatgtgctgacaacaaaatcacacacaaattatcaatggaaatcaaatttatcaacccatggaggtctggatttggagtcacactcaaaattaaagtggaaaaccacactacaggctgatcaactttgatgtaatgtccttaaaacaagtcaaaatgaggttcagtagtgtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctgatgagCCAGATGTTGCCAGTACCTCATATCTCAATACAGAGGACAACAGTCTTTTGTTAAACCACTAAAACAAGTTGTGTACAGTTAGTCTACTTCCTGGTATCAGCGGCACTCTCCCTATGGACCTATCACTGTCCTCCTCATCAGTGGTCTGTTGTTTGATTTTCATAATTGCTCATactttattattatcattattactatAACTAGACCACGGTTAGGTACTGGATATGtagtgttatttttgtatttgagaAGAAACATACATCCTTGTCTCCCTATTCCCCCACCCCAGAATTTGTTACATATTTCTGTTCCGTTTCCTCCCCCATTGTTAATGAATCAGTAATATTGTACATGGTAGCATGGGCGGAGAGGAGAGCCTGTGTATACCCAGTCAAAAGAGGACACTGTTGAACAGTGTGGCTTCCATGTATATCTAGGCAGCTGTTTAGAACCAGTGAAACCAGTCCTGTGCTGTACAGCCCCAGATATAACAGATCATTTGTTGTGTCATTGCAAGACTGTTTCGACAATTGTTGTGGGAAAAAATATGGATTGAAAAATGGGAAAACATGCTTTTTTTCATTATtgagttacatttttttttaaatatcttattattattatttactatgCCCCTCCCCAGTGCATGTAAGCCCTTTGAGATGCAATAAACTCAATGATGGAAAGAATCGCCCATTAATGATCGCCAATCCTTTTCTCATGTTGATAGACCAGATCATGGACACATTGCATTTTTAATCTGGTGCACTAATTGTCATGACATTGTAAGGCCTTTCTTGGGTTGTGTTCGTTAGGGCGCACAactgaaaacattttaaaatgtaaatgactgtttcttattggacaggtCCAAGTAGTCCCTccatgtttcagtctgttttcttccatttgttgCCTAATGATCATGACCCTGGCTACAGGCATAGATGTGtcatagatacatacatacatcactTCTCCTCACGGGAAAATGAAAACACACATACAAGTTGTAATCTTGGTTTAATTGTTGTTTTTTCAATCATGGTGAAATGTTATTCATTTAATGTATTTTGTCATCAATGGCAAACTCGTATAAATTGTGGCACATAATAAACCAGATTCATCAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165338 lncRNA upstream 34 42138760 ~ 42139014 (+) True G144034
TU165321 lncRNA upstream 48133 42090612 ~ 42090915 (+) True G144017
TU165320 lncRNA upstream 49518 42089290 ~ 42089530 (+) True G144016
TU165316 lncRNA upstream 54934 42083621 ~ 42084114 (+) True G144012
TU165258 lncRNA upstream 65060 42072815 ~ 42073988 (+) True G143977
TU165482 lncRNA downstream 167423 42385198 ~ 42385672 (+) True G144176
TU165972 lncRNA downstream 184123 42401898 ~ 42402244 (+) True G144629
TU165977 lncRNA downstream 187102 42404877 ~ 42405121 (+) True G144634
TU166062 lncRNA downstream 266066 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA downstream 266066 42483841 ~ 42486432 (+) True G144706
XR_005036747.1 mRNA upstream 46975 42067004 ~ 42092073 (+) True LOC110489918
XR_005036748.1 mRNA upstream 67764 42067004 ~ 42071284 (+) False LOC110489918
XM_021562883.2 mRNA upstream 99205 42037500 ~ 42039843 (+) True LOC110489902
XM_021562836.2 mRNA upstream 312215 41750039 ~ 41826833 (+) True LOC110489877
XM_021562824.2 mRNA upstream 397138 41730685 ~ 41741910 (+) True LOC110489869
XM_021563003.2 mRNA downstream 34162 42251937 ~ 42383957 (+) True LOC110489963
XM_021563049.2 mRNA downstream 311306 42529081 ~ 42572673 (+) False LOC110489991
XM_021563058.2 mRNA downstream 311306 42529081 ~ 42572673 (+) True LOC110489991
XM_036948784.1 mRNA downstream 364584 42582359 ~ 42592552 (+) False LOC110489996
XM_036948800.1 mRNA downstream 364584 42582359 ~ 42592552 (+) False LOC110489996
TU165213 other upstream 169731 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 169826 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 597457 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4087304 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4195036 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 292555 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1513097 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1550932 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1581629 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1668821 43886596 ~ 43889609 (+) False G146165

Expression Profile