RNA id: XM_021563003.2


Basic Information

Item Value
RNA id XM_021563003.2
length 2089
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110489963
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42251937 ~ 42383957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTCATCGTTCTGTGTTGTCACTGGGAGAGCATTCACTGGCGCATCCACTTGTTGACCTGTGTTCACAACAGAGTTCAGGGTTACTGTTCGCTATTTAAAGAGGGAGGCAACATGGCACACGGTTTAGTCAAACGGGAATCAGTCGAGAGTGAGATGCATAAACCCGAAGACCAAAGTAAGATCTTTGTTTATACGAAGAAGAGGGGGTATGACGTTACACGTAACCCCTACCTGAACAAGggCATGGCCTTCTCCCTGGAGGAACGTCTCCAGCTGGGGATCCACGGCCTGCTGCCTCCCTGCTTCCTCAGCCAGGACGTTCAGCTCCTCCGGGTCCTCAAGAACTACGAGATGAAGAGGGACGACCTGGACAGATATGTGTTTCTGATGGGGCTCCAGGACAGGAATGAGAAGCTGTTCTACCGTGTGCTGACGTCCGACACGGAGAGGTTCATGCCTATTGTTTACACCCCCACCGTGGGCCTGGCCTGCCAGATGTATGGCCTTGCCTTCAGGAGACCCagGGGGCTTTTTATCACCATCCATGACCTCACTCACATCTCCACCGTGCTCCAGAGCTGGCCAGAGAAGGACATACGCGCGGTGTGTGTGACAGACGGAGAGAGGATCCTGGGCCTGGGGGACCTGGGCTGCTACGGCATGGGCATCCCTGTGGGCAAGCTGGCACTCTACACGGCCTGTGGAGGCATGCCACCCCAGCAGTGTCTGCCAGTCATGCTGGATGTGGGCACAGACAATGAGGAGCTGCTGAAGGACCCTCTATACATTGGGCTGAGACACAAGAGGATTCGAGGCCAGGCCTATGATGACCTGCTGGAGGAGTTTATGAAGGCAGTTTCGGACAGGTATGGAATGGATTGTCTCATCCAGTTTGAGGACTTTGCCAATACCAATGCCTTCCGTCTGCTGAGCAAGTACCGCGACCAGTACTGCACGTTCAACGATGACATCCAAGGTACCGCTGCAGTGGCGGTGGCCGGCCTACTCGCTGCCCTTCGTGTCACCAAGTGCAAGATGTCAGACCATACCATTGTATTCCAGGGTGCAGGGGAGGCTGCGATGGGGATAGCTGACCTCATCACGATGGCGATGGAGAAGGAGGGACTCTCCGAAGATGAGGCTCTGAGGAAGATCTGGATGGTTGACTCCAAGGGTCTCATCGTCAAGGGAAGAGACCACCTGACCCATGAGAAGGAGAGGTTTGCCCACGAACACAAGCAGATGAGGAACCTGGTAGATGTGGTACATGAGCTCAAACCCACAGCCATCATAGGTGTGGCAGCCATCTCTGGAGCTTTCACGGAGGAAATCATCAGGGACATGGCCTCGTTTAACGAGAGGCCGATCATCTTCGCCCTTAGCAACCCCACCAGCAAGGCAGAGTGCACTGCCGAGCAGTGCTACACCATCACAGAGGGGCGGGGCATCTTTGCCAGTGGCAGTCCATTTGACCCCGTGACCCTCCCTGATGGGCGGACGTTCTTCCCTGGCCAGGGCAACAATGCGTACGTGTTCCCAGGAGTCGGCCTGGGCGTCACCGCCTGTGCAATCCGACACATCACAGATGAGATCTTCCTCACCACCGCAGAgACCATTGCTGACCTGGTGACAGAGAAGGATCTGTCAGAGGGAAGACTGTACCCTCCCCTGAACACCATCAGAGATGTCTCTCTCAAGCTGGCCGTGAAGATCGTGGAGTTTGCCTATGAGCACAAGTTGGCGACGCTGTACCCGGAGCCTGAGGATAAGGAGGCTTTTGTGCGCTCCCTGATCTACAGCCCTGACTATGACGAGTTTGCTGTGGACTCTTACCGCTGGCCAGAGGACGCCATGACCATCCAGTCATGCAAACTGTGACGTGGTGGAGAGACTGAGGGCTAGGGACATGGGGCACAAAGGAGAAGTGATCCAGGATGGGAGTGAAGGAGACTACAAAAGTGCAATTTCATTAAGACAATGGTGATTGTAATTTTAATGTGAAAGAGAAAATATCTTAATGAATGTGATAGATACGAGCCGAAATAGACATGATCAAATAAAATGGTTTAAATGATTGTTTACTTCA

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165303 lncRNA upstream 31734 42139048 ~ 42220203 (+) True LOC110489919
TU165295 lncRNA upstream 34162 42139048 ~ 42217775 (+) False LOC110489919
TU165338 lncRNA upstream 112923 42138760 ~ 42139014 (+) True G144034
TU165321 lncRNA upstream 161022 42090612 ~ 42090915 (+) True G144017
TU165320 lncRNA upstream 162407 42089290 ~ 42089530 (+) True G144016
TU165482 lncRNA downstream 1241 42385198 ~ 42385672 (+) True G144176
TU165972 lncRNA downstream 17941 42401898 ~ 42402244 (+) True G144629
TU165977 lncRNA downstream 20920 42404877 ~ 42405121 (+) True G144634
TU166062 lncRNA downstream 99884 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA downstream 99884 42483841 ~ 42486432 (+) True G144706
XM_021562938.2 mRNA upstream 34162 42150331 ~ 42217775 (+) False LOC110489919
XM_021562946.2 mRNA upstream 36123 42150330 ~ 42215814 (+) False LOC110489919
XM_021562952.2 mRNA upstream 36123 42150331 ~ 42215814 (+) False LOC110489919
XM_021562971.2 mRNA upstream 36123 42150331 ~ 42215814 (+) False LOC110489919
XM_021562979.2 mRNA upstream 36123 42172346 ~ 42215814 (+) False LOC110489919
XM_021563049.2 mRNA downstream 145124 42529081 ~ 42572673 (+) False LOC110489991
XM_021563058.2 mRNA downstream 145124 42529081 ~ 42572673 (+) True LOC110489991
XM_036948784.1 mRNA downstream 198402 42582359 ~ 42592552 (+) False LOC110489996
XM_036948800.1 mRNA downstream 198402 42582359 ~ 42592552 (+) False LOC110489996
XM_036948791.1 mRNA downstream 198568 42582525 ~ 42592552 (+) True LOC110489996
TU165213 other upstream 282620 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 282715 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 710346 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4200193 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4307925 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 126373 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1346915 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1384750 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1415447 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1502639 43886596 ~ 43889609 (+) False G146165

Expression Profile