RNA id: XM_021563013.2


Basic Information

Item Value
RNA id XM_021563013.2
length 2804
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110489971
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42495466 ~ 42501897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCGCCCTTGCGCGTTAATGTGTCGAGGGGGTACCTTGCTGCTCCATTAGAAAAGCCGGATCACATACGCCACCGCATCACTTTGCGGGCGGAGATTGGCCTGTCCTCATCTCTCTGACTCCTTCTTGTCTCAATCAGTCACTGCGTGGTCTTCATGGTTCTCAAACCACTGAACGCAGAGCCAGCCATGCAAGCAACTCGGGCACCCACTATCAGTGTGTTTGCAGACTGCAGCATCCCGGCCGGCCTGCGGATAGGACCGGTGCAGGGTATCTTCAAACTAGGGAAATACGTTACTGATCGCAAAGAGGTGGTAACCAAGAAAAAGATTCGGCTGCTGAGGGGGGAAATCGTGGATGAATCAGGTTGCCATGTGCCAGACTGGATTGGGTGTATCCGGGCAGCCAGAAACAGTCAAGAACAGAACTTGGAGGCTGTCTCAGATCTACCTGGTGGGCAGATTTTCTATCGTGTGCTGACGGAGATCCCAGCCGGCGAGGAGCTGAGTGTGTGGTACTCCAACACTCTGGCCCAGTGGTACGACATCCCTACCACTGCCACTCCAACACACGACGAGAAAGgTGAAGAACGCTACATTTGCTGGTACTGCTGGAGAATATTTAAATATCCCAACACACTCAAGGCCCACGTCCATTTCCACTGCGCTTTGAGCAACGGGCGGGGCTTTGTGAACAGCGAGCAGGCCAGGAGCACAGACAGCTTCAGCAGGTCACCCAAATCCGGGGACATTCCCAACACCTCGGCCTCGCCCAGGAACGGCCACAACACCTCCATCTCAGACTCTGTCAGACGGACCGTGTCTTCCTCACCCTTCCTCAACAAAGCGGGGGTAGCAAAGAAACCCAGCTCtgaggagcaggacagagcacTTGACATGAGCGTTACCTCAGTCAGAAACCACGGACATCTCATGGGCCTTGGCGCAACGTCTTCAATGTTGAGCAACATGGGGTTCCACCCAGGCGTGCGCTCTGCATTCAAGCCAATGGGCCAATCCAAGGTCCCCGCGGCTGACGTCTACAGAGAGGAAACTAATGGGAAGCATAATGGACTAGGCTTCAGCAAACTCATGGGGAACATGAAATCGACGCGAGCCTTGAATGAACCTTTAACCGGAAGCCATTCCTCCAAGTGCGTCCATCCATTAGATTCTACATCTCCCGTGGTCCCGTGCGCAAACGCCATCAGGGGTTTTCCGTTAATACCTAATTTCGATGAGACATCGGCTTTCAAGCACGTGGAGAGCCGGATGCACTCTGGACTGTCCCCCTCGCGTTACTCTCAGATGTCCTCTGGATTCCAAATTGAGAGGTTTTCTCTGCCTCAGTTCGATGGCGTCAAGCCATATAATGGAGATTGCAATATCCCCCTCATGCCATTCACCGTGTACAATGGCGAGCTGCTTTATAGTTCACCCTACTACCCACTGAAATTCCATTTTAGCAATCTCCTAAAATACCCGGAGTCTATGTCCTACTTTGGCGCACCTGCACTCAACCAAGACCTGGGTTCAATAACCAACATTGACAGGGAGATAGCCATGCACACTCAACAGTTGTCTGAAATAGCCGTCGAAAAGAACCGAGTCAGGCTCGACTCTATGCCCACTGCTAACACAGGCTCAGGGAAGCCCAAAAAGGGACACTTATGTCTTTACTGTGGTAAACTGTACTCTCGGAAATACGGACTCAAGATCCACATGAGAACTCACACAGGGTACAAACCACTGAAGTGCAAAGTTTGTTTTCGGCCCTTCGGTGACCCCAGCAACCTGAATAAGCACATCCGTCTGCACGCGGAGGGGAACACCCCGTACAGGTGCGAGTTCTGTGGCAAGGTACTGGTGCGCCGGAGGGATTTGGAGCGTCATGTCAAATCAAGGCACCCTGGACAAACAATAAAAAAAGCTGAGGACAAAACCGAGGGCATATTCGAGGATCAAGAGCAAAAGAGCGACAATGACAGCGACGTAGATGTATGCTTCACCGATGATCAGAGCGACCAAGAATCCAGTAAAATAGATGATTAATTGAGATTTTGACACAAATAGGGGCTATGGCAAAGACGGCACAATGTTTTGTGAAATGGTTACAGGTTACCTGTACAGATTTCCGTGTAATTTATGTTTCTCCCAAGGAACGAAAGTTATTTATGTATGTTTTAAAGCTATTgaaaatgtaattgttttttatttaaaaaatcagATTAGGACTAGACAAGTTTCAAATTACAGCCTTTTCTTTTACAACAATGTCTATTCGTTTCAGATGGAACAAAGTATAGGCAGTATGATTTCAGAATTGTATAATATCACAGCTGATGATAATGCATTTCTTTTTTATATGCTAATTGGTAGCCAATATGTTCCCCAAATAGAGGTCGGCTGCACTTTAAAACAGTTATGAACAATTCATTATCAAGCCATGTAGGTCAAGTGTTTATTAAACACTGAATATCACACTTACTGCTATTTTTTAATTCATTTGAAGTACAATAACTTAAATGTTGCACTTTCTTGCGAGGGCATTTAATTGTTTTAGGACAAAGTTGAGAAGGACAGCAAATATTTATAGCAGTTAGTACCAATCCATTATTTAAGGATCTTGTTTATAGTAGAAAATAACATCTGATTTAAAAAGCATCATGTACAAATGTAAGAATATGATATTTCACTGTTCAGTGAAAAAGTGTTGTACGTTTGTTCATAAGTGATATTGTATATTGACAATATTTCCCTCTTGTTCACTGAGTTGTTCCTTTTTAATAAATGTAATTTAAAACT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24645 PRDM13; PR domain zinc finger protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165997 lncRNA downstream 81464 42413717 ~ 42414002 (-) True G144654
TU165964 lncRNA downstream 97316 42397901 ~ 42398150 (-) True G144621
TU165952 lncRNA downstream 106629 42388636 ~ 42388837 (-) True G144609
TU165947 lncRNA downstream 108892 42386343 ~ 42386574 (-) True G144604
TU165833 lncRNA downstream 245438 42247891 ~ 42250028 (-) True G144496
TU166344 lncRNA upstream 86661 42588558 ~ 42592604 (-) True G144941
TU166417 lncRNA upstream 138602 42640499 ~ 42642693 (-) True G144968
TU166453 lncRNA upstream 179511 42681408 ~ 42683345 (-) True G144995
TU166473 lncRNA upstream 215837 42717734 ~ 42717959 (-) True G145015
TU166477 lncRNA upstream 218823 42720720 ~ 42720929 (-) True G145019
XR_005036768.1 mRNA downstream 154993 42314091 ~ 42340473 (-) False LOC118940237
XR_005036767.1 mRNA downstream 154993 42322365 ~ 42340473 (-) False LOC118940237
XR_005036769.1 mRNA downstream 154993 42339204 ~ 42340473 (-) True LOC118940237
XM_021562991.2 mRNA downstream 271708 42217647 ~ 42223758 (-) True LOC110489954
XM_036948656.1 mRNA downstream 395171 42085411 ~ 42100295 (-) True LOC110501561
XM_021563025.2 mRNA upstream 8425 42510322 ~ 42517281 (-) False LOC110489980
XM_021563035.2 mRNA upstream 8425 42510322 ~ 42517281 (-) True LOC110489980
LOC118936750 mRNA upstream 184242 42686139 ~ 42687000 (-) True LOC118936750
XM_021563153.2 mRNA upstream 222181 42724078 ~ 42727549 (-) False LOC110490045
XR_005036801.1 mRNA upstream 277513 42779410 ~ 42792775 (-) False LOC110490051
TU165059 other downstream 765044 41714546 ~ 41730422 (-) True LOC110489860
TU164135 other downstream 1631745 40863214 ~ 40863721 (-) True G142918
TU163223 other downstream 2254062 40224622 ~ 40241404 (-) False LOC110489653
TU166468 other upstream 204921 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 768820 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 870943 43372840 ~ 43392129 (-) True LOC110490183
TU168015 other upstream 1274166 43776063 ~ 43783719 (-) True LOC110490298
TU168885 other upstream 1932893 44434790 ~ 44436117 (-) True LOC110490352

Expression Profile