RNA id: XM_036948791.1


Basic Information

Item Value
RNA id XM_036948791.1
length 3635
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110489996
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42582359 ~ 42592552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGTTATGATGTTTAGTTTGTGTCCATTCTCCTGATGCTATAGTAGATGATGTTAGCTGCTGTTCTTTGAAGCAGTATTCCAAACTATAGCTAGCAATGTTTTTACTTTCCAACTCAAATCTTGAAAACAAGCAAACTGGCGCTAGCTAAGTGTTAGCCAGTTTAATTTCGCACCGAGCCCGGGGAATTTGGAAAACATTGACTGAAGAAGCAGACGAGCTCCAGGTGTAGGAACTACAGGGTGAAAGATGTGGGACCAGGGTGGACAGCCCTGGCCACAATGGCCAATGAACCAGCAGCAGTGGATGCAGTCCTTCCAGCACCAGCAAGATCCAAGCCAAGTGGACTGGGCAGCACTGGCCCAGGCCTGGATTGCTCAGAAAGAGTCTACAGGCCCTACAGTGGACCAGCAGAACATTCATCCTAATGGACAGGACATCCCTGGCATGGATCCTGTGATGCCTAATAACCATGGCTCCTTCCAGGGGGACACCAATTTTGGCAGAATGTGGCAACCTGaATGGGGGATGCATGGtcagccccctcctcctcccataGACCAGGCGTGGATCCCCCCAGGAACAGGACCCATGGGGACTGGGCCTATGGATGTGGTGGCTCCCTCTGAGGACAGCAACAGCCAGGACAGTCTAGAGTTCTCTGAAGGCCACCACAGGGTCTTCCCCCAGAACAGCCACGGCTTTGGGGGTCAGCCCGACAACTACGCCATGAACCCAATGGCCATAAACCAGTTTGATTatcagCATGGGGCGGCTGCCACCTACGGCCCCACTCCCACAGGGTTCCACCCTCCATACTGGCAGCAGGGTCACCCACAGAACAGACGGGACAGGCCCCCAGGCTTTAGGGACCGCCAGAGATCCCCCATCCAGATCCCCAAACAAGATGCTCCTGCTGCTGCCCTCGCTTTCCCAGGCACTCaggaaaacagacacacacacacagcatccaaTGACCTGGCACTCCTCTCAGATGCTGTGAAGAGGCGCACCCTGCCGGCCTGGATCCGAGAGGGCCTGGAGAAGAtggacagggagaaacagaagaaGCTGGAGAAGGAGCGCATGGAGAAACAGCGTGCTGAAATGGCTAAAGATGAAGACAAAGAGAGTGACACAGTGGACGAGGGAGGCGATGGGCCTCGTTTACCCCGCAAGAGTAAATTTGACAGTGATGATGAAGAGGgtgatgaagaggagagggaagatgaggACCGGGTCCTGACCAGGAAGCAGGAGCTGGCCAGCAGGAGCCCGTCTCCTCCACTGgaggaccagagcgaaccagagatgaccgaggaggagagagagttccAGCTGATGATTGTGACTAAAACTCTGCTGACGGAAATCCTGCTGGAGGTCACCAACGAAGAGATCCAAACTGTGGCCAAAGAGACACACCGCAAAGCCACCAAAGCTCCTGCCAAACAGCTGGCACAGTCAAGTGCACTGACTTCTCTGATCGGCATTGGTGGACTTGGTGACTATGGCTCGGACTTGAGTGAGAACGAGGAGGAGCACAGTGCCCAGGCGTCCGAGTCCTCTGACACGGACGAGGAGGAGCTGCACCACCGAATCCGGGAGAAGATAGACGCCTTCCGACGCAAGGAGAGGGAGCTGCAGGAGAGACAAGCGCAGGAGGCGCAGCACGCACGTGAAGAGATGGCGCTGGAcagagtgagcagagagaggggggattatGACGAGGGCCAGTTAGAGAGCCTccacaaacaggaagtgagagagagggaggcggaaCCCACAGCAGAGAGACGCAGATCCCGCAGTGAGACTGAGGTTATCAGCGAGGTCAGGCAGACGGGCCGGGGGAAGGAGCGTGGCGCAGGGCGGGGCACCAGTGGTTCCCCCAGCAACGGACGCAGCAGCAGCTCCCATTCCAGCTCCAGCAGCGCCAGCAGCCAATCGTCTTCCTTCTCCTCATCATCCTCGGCCTCCTCACGCTCCTCTTCGCGCTCCTCCTCGCCCCGGAGGAAGAGGAGGCGCAGCCGCTCCTCCTCACACAGGGCCCGTGTTGGTGGCCGGCGCAGCCACAGTCGCAGCTCCCACAGACGTCACGGAGAGCGCAGTGTCGACAAGGCccgagagaggaggaagggcagCCGGAACCACAGCGCAGAGCGCTTAACCCGCCACCGGAACCGTAGCCACTCTCGAGAGCGAAGGGTCAGCAGAGGAGGCAAGAGCAGGTCCAAGGACAGGGCCAGCCGCAGCAAGAGCAgggacaaggagagggacagagaccggAAGAGGAGTAGGGAGCGCAGGGACAGTCACAGCCGCAGCaagagcagggacagagacaggaagaggagcaGGGAGTGCAGGGACAGTCACAGCCGCAGCAAGAGCAgggacaaggagagggacagagacaggaagaggagcaGGGAGCGCAGGGACAGCCGCAGCAGCAAGCACAAGCAGAAAGCCTCCAGCAAGGATAGGGACAGGAAGAAAGACCGGAGCGGCAGCCACgacaagaaggagagagagaagaagaaggagaaggagaaagagtcAGATAGGAAGAAGCAGAAagccaaagagaaagagagggaaaaggagaaagcgaaggaaaaggagagggggaaggagaaagagagggatagggaggtgAGCTCTGTGGTGGCGGAGGAGAGCAACGCCAAATCCAAGAAAAGGAAAGAGAGCAGCGATCACACAGACCCTCAGGGTGACAAGCACTCCCATCAGGGTAGCAAGGCTAGCAAGAAGGGCTCTGCCAAATCTAGCAAGAGGTACTCTGACTCAGAGTCGAGCAGGTCCCCCACCCCCGAGCTTAGCAAGGAAAAGAAGTATAAGAAATCCAAACGTAGTCGCTCAAGATCAACGGAAAAATCTCACAAGTCTGGTAAGAAGGCAAGCCGCAAAAACAAGTCTAAGTCACGATCAAGGTCCACGTCTCCCGCCAGGCGCAGGCGTTAAGGAGCGCAGGGCTCCCTGATCTGTGCACTTACATTTAAATTCCATGAGTTTAACAGGCTTGTCTCATTATAGAGGCAACGGTGTAGGTGAACTCTCCACTCCCCCCCACCTTCTATCTTTGTAAATATGTGATTTTTAAGTGCAAGTTGGCAAACAGGACATTTTGAATGCTAGGTTTTTGCCTTCTATCATGCAAAGCTCTGAGGCTTTGTAGTCAGTAGAATCTTGGAAAGATGTCATTTTAAAAAGCTTAACAGAATAAACGTATTAATGTAAATTGTCCAATAAAACTGAAATGATCCCTTGTTCTGGGTATTTTCTTTGTCTACTGTATAACTGTTCcccgatgatgatgatgatgaagaactCATCCAGGACTGCATGGGAAACACAATTTATGTACCACACTAAAGGCATGACTGAAGTGTTGAATGTCACTCATTTGTTAGTGGAGTAGatgcatttattttaaaaaaatacaaaaagaatGACGTGTGCAACTGACTTTCAAATCATTACTTTATGATTTTTTTGAGGGTTATCATTAAACCTGCAGTAATTTGGATTGAGTGCAATTGATAACATGCCATTATTAATTGCGTTTAATTCATAATTTGGAATAGTCTTTTAGAAATTCTAATGGCAAA

Function

GO: NA

KEGG:

id description
K13170 PNISR, SFRS18; arginine/serine-rich protein PNISR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166062 lncRNA upstream 96093 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA upstream 96093 42483841 ~ 42486432 (+) True G144706
TU165977 lncRNA upstream 177404 42404877 ~ 42405121 (+) True G144634
TU165972 lncRNA upstream 180281 42401898 ~ 42402244 (+) True G144629
TU165482 lncRNA upstream 196853 42385198 ~ 42385672 (+) True G144176
TU166104 lncRNA downstream 49651 42642203 ~ 42643938 (+) False G144731
TU166105 lncRNA downstream 49651 42642203 ~ 42643938 (+) True G144731
TU166197 lncRNA downstream 139378 42731930 ~ 42732135 (+) True G144812
TU166510 lncRNA downstream 168429 42760981 ~ 42761299 (+) True G145043
TU166511 lncRNA downstream 169649 42762201 ~ 42762510 (+) True G145044
XM_021563049.2 mRNA upstream 9852 42529081 ~ 42572673 (+) False LOC110489991
XM_021563058.2 mRNA upstream 9852 42529081 ~ 42572673 (+) True LOC110489991
XM_021563003.2 mRNA upstream 198568 42251937 ~ 42383957 (+) True LOC110489963
XM_021562938.2 mRNA upstream 364750 42150331 ~ 42217775 (+) False LOC110489919
XM_036948835.1 mRNA downstream 1380 42593932 ~ 42616488 (+) False LOC110490015
XM_036948827.1 mRNA downstream 2222 42594774 ~ 42616488 (+) False LOC110490015
XM_021563096.2 mRNA downstream 2510 42595062 ~ 42616488 (+) False LOC110490015
XM_036948819.1 mRNA downstream 4217 42596769 ~ 42616488 (+) True LOC110490015
XM_021563109.2 mRNA downstream 25150 42617702 ~ 42642160 (+) True LOC110490022
TU166008 other upstream 16495 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 613208 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 613303 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1040934 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4530781 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 1138320 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1176155 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1206852 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1294044 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 1404228 43996780 ~ 43997065 (+) True G146226

Expression Profile