RNA id: XM_021563119.2


Basic Information

Item Value
RNA id XM_021563119.2
length 3884
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110490029
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42664424 ~ 42683349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTCCCACAATGCTCTGCTTCATAGGCATTAATACTCGATGTAAACAGAAGTGAGAACAAAAGTCTGCCGTTTTAGGATTTCTGTTAAAATAATCTCAGATATGGAACAAAGACAGTCTTGCTATATGAATGCTTAGTTTGATCTACTGTTAACGTCCTGTATGTGGCTGGGCCTGTAGCCTGCGCTCTGGGGCCTCTTCCCACAAGCCACACCCAGCCCACTGCTCCCCTGACCCACTGTTCCCTATGCTAACCCTTCTGAGCATGTTTTACTATATCTGTCTGCGGCGCCGGTCCAGGAGCGGAACTCGGGGTGAGGCGCTGACCAGCAGGCGGGCCGTGGAGTCAGGCCAGCGGGCCACCCTGCCCATCAGCGTGGAGGTGGAACAGTATGCCAAAGAGGTGCTGGACTTCAGCTCCCACTACGGCAGTGAGAACAGCATGTCGTACACCATGTGGAACCTGGCCGGCATGCCCAACGTCTACCCCAGCTCTGGGGACTTCACCCAGACGGCCGTGTTCAGGGCCTACGGGACGTGGTGGGAGCAGTGTGCCAGCGCACCTCTGCCGTTCCGCCGCACGCCCAAGGCCTTCCATAGCCAGGACTACATCGAGCTGGCCTTCGAGGAGCCCGTCTACCCCACAGCTGTGGAGGTGCTGGAGACCTACCACCCGGGGGCCATTGTCCAGATCATGGCCTGCTCCCTCAACCCCTTCTCTCAGAACCCTCCCACAGACGTCAGGTGGGAGGTGTTGTGGGCTGAGGAGCCCACCAATGTGCTGACCCCCCAGGCCAGGCAGTTCTCCCCCAGCATCAAGCAGCTGAACTTCCCCACCAACTTGATCCGCGTGGAGGTCAACAGCTCCCTGCTAAAGTACTACACAGAGCTGGATGCCGTCGTCCTGCGTGGCCAGAAAGAGAGGCCCATCCTCTCCCTTTATAAGATGCCCAGGATCGACATCTGTGACCTGAGTGACAGTGATGAGGAGCTGTCTGACCCGGGAGCCTCCTTCCGACAGGCCGGGGATGGCAAGCACATTAACCTGGGGAATGGATACTTCGATAAACTGCCCTACGAGTTGATCCAGCTGATAGTCAGCCACCTGACCCTGCCCGACCTATGTCGCCTAACCCAGACCTGTAAGCTACTCCACCAGCACTGCTGTGACCCCCTCCAGTACATCCAGCTGAGCCTGCAGCCATACTGGGCTCGCCTCAGTGACACCTCCCTGGGCCACCTGCAGGGCCGCTGCACCCTGCTCCAGAGACTCAACCTCTCCTGGACCGGCAACCGCGGAGCCCTCACCCTCACTGGCTTCAGCAGctTCATGAAGGCATGTGGCGGGAGCCTGGTGTGTCTGGAGCTGTCGTGTTGTCACTTCCTGAGTGAACCGTGTCTAGAGGTCATCTCCCAGACGTGTCCCGGGCTGCAGGAGCTCAACCTGTCCTCGTGCGACCGCCTCCACCCCCAGGCCTTTACACACATCTCCAAGCTCACCCAACTGCGCCGGCTAGTGCTCTACCGCACAAAGatagagCAAACAGCCATGTTGAGCATCCTAACATTCTGCATTGAGCTGAGACACCTCAACCTGGGGAGCTGTGTGATGATAGACGACTATGACGTGGTGGCCAGCATGCTGGCTGTCCGCTGCCGCTCACTGCGCTCCCTGGACCTGTGGCGCTGCAGAAACCTGACGGAGCGCGGCCTGGCTGAGCTGGCTGCAGGGTGCAGACTACTGGAGGAGTTGGACCTGGGCTGGTGCTCCACACTGCAGAGCAGCTCGGGCTGCTTCCAGCACCTGGCTCGCAACCTGCCGTGCCTGAGGAAGCTCTTCCTCACCGCCAACCGCACCGTGTGCGACTCGGACATTGAGGAGTTGGCTGCCAACTGCCCCGCACTGCAGCACCTCGACATATTGGGCACCCGGATGGTAAGCTCCTCTTCCCTGAGGAAGCTGCTGCAGGCGTGTCCTAAGCTCCTCCTCCTGGACGTGTCCTTCTGCTCGCAGGTGGACGCCCGCATCGTCCAAGAGCTCTGCGGACTCTTCCCCAACGTGGCCATCAAGAAGAGCTTTACCCAGTGACCTCACTCAGCCCCACCCTCACACAGGGGCAGTGACACAGGGACACCAGGGGGAGGTGCTAATTTAGACTAGCAGGGTAGAGTACTACTGGATTTCCAGTGGGTAGAATGAATGGGCCTGATGGCTGAGAGCACTGAGGCCTATTGTAATGTGGACTGAATGGTTAGGAGTGTTGTGGTGCCCTAAGCATCAGCTGAACACCTCACCCACACCTCAACACAGTCTCCTCGTGTCAAGCCGCTGAATGCAAGAAAGAGTCTTAAGAGTAAAACTGTTTGAAATCAGGGTCACGGCTGCCAAAGCCGCTAGATTTCATCATTGGTCAGCCGGTAACTGACACATCTGGTGGCTGCTTGTCATCTGCCCACCCCCCACCACCCTGTGACGCATTTAGTAAAATGGGTGACCTCAATGTTGCATCTGAATCTGAAATctcagggtttttattttgtttatattgttttaatttgttttatttatttttgtccgCGAAACATTTGAGTCCTGTTTGATTTCCACTGCCACAGTTTGTTCTGAGACAACAAAAATTATGGGAGTTCATAAAAATTTACATTTGGCACTGATACTGagacaaaacatttttggggtgTATTTGATGTTGAATATTGTGCAAATTGTATGATTGTAAAATTATATCACTTTCCTTAATTATTTATTGATCTTGTAGTATATTATTGCACATCTCCAATGCTATGAAGCATTTCCTTTAAACTGAAACAAAGCTATTGAGGAATAAACGCTATACAATAGGCTGTACTTGTGAGCACCCACATTCCCATACAGAACATCTTCGCATGTGCATGGGAGGTCGTTTCACTCTCCTGCAAATGTGATAATCGAGGGGCAACTACTGCGGAGTAGATTAGCCTCTCTTATCCCCTCTCTTCACTATCTTTGTTGTTGTGGATATCGGCCTGATATGCAGCTACTGAAATTTTTTATAGCTGAATCTATCTTTATGCAAAACCTGAAGTTTCATTTTGAGCACATGCTAGCTAGTATGTGAAGTATTTTTGTGCCTTATATTCATGACTGAATGTGGTGTCCATGTGTGTCAGTGATTTGTAATGCTTTGCTTCCTGCCCTCTACCAAAGTTACTAGCAAATCCCAGGTCCCTCACTATAGCTTTATTTGACCAGTGAAGAAACCCATGCAGATCTGTCATCTTGATTGACACATGCAAAGCCATATTTATTTTAAACAGAATCTTATCTCCATCTTTCAATTCCCTTTTTATTAAGTGGCAGTTATGTGAATGTCTGCTTTTTGGATTACATTTTCTTTTATCTGTGGAAACGTGGTCTGGTCACACTCAAATCACTAAAGTAACCTGCAGAGGCAAACTATTGAAAAACATATTAATGTCAACACTCGTacaacgaacacacacacacaacaaacgcACACAATCTGTCATCCTGCTACACAAATCTAGTTCCTCTCCTTTGTCCGGTCACTAGTTGACCAAAGTCACCACAATTTTCACATTGTAATGCTACTTTTATTTAAAGGCATTTATTTATGTGGACCTGCTCTTTTTTGCAGTGATTGACCTTTCCCAGTTAgttttggatgtgtgtgtgtgtggtcaaacTTTGTGCCATTTGTAAAAACTTTAGTAATGTACCCTTAACTAAGTGTGAATGTCAGGTGTGGTGTCATCAAGACTCGCCGGCAAATAACCGCTCTAAAGTATTGAAAAAAGGTTGCACCTCTACTACGACAAAACTGGGTGCTTTAATTTTAAATAAACAGAAGGTTGATGACTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166104 lncRNA upstream 20486 42642203 ~ 42643938 (+) False G144731
TU166105 lncRNA upstream 20486 42642203 ~ 42643938 (+) True G144731
TU166134 lncRNA upstream 57322 42565552 ~ 42607102 (+) True G144751
TU166062 lncRNA upstream 177992 42483841 ~ 42486432 (+) False G144706
TU166065 lncRNA upstream 177992 42483841 ~ 42486432 (+) True G144706
TU166197 lncRNA downstream 48581 42731930 ~ 42732135 (+) True G144812
TU166510 lncRNA downstream 77632 42760981 ~ 42761299 (+) True G145043
TU166511 lncRNA downstream 78852 42762201 ~ 42762510 (+) True G145044
TU166512 lncRNA downstream 82757 42766106 ~ 42766418 (+) True G145045
TU166659 lncRNA downstream 212083 42895432 ~ 42895766 (+) True G145191
XM_021563109.2 mRNA upstream 22264 42617702 ~ 42642160 (+) True LOC110490022
XM_036948835.1 mRNA upstream 47936 42593932 ~ 42616488 (+) False LOC110490015
XM_036948827.1 mRNA upstream 47936 42594774 ~ 42616488 (+) False LOC110490015
XM_021563096.2 mRNA upstream 47936 42595062 ~ 42616488 (+) False LOC110490015
XM_036948819.1 mRNA upstream 47936 42596769 ~ 42616488 (+) True LOC110490015
XM_021618290.2 mRNA downstream 192875 42876224 ~ 42877363 (+) True LOC110533774
LOC110501569 mRNA downstream 194864 42878213 ~ 42910743 (+) True LOC110501569
XM_021563186.2 mRNA downstream 287666 42971015 ~ 42975154 (+) True LOC110490056
XM_021563200.2 mRNA downstream 292051 42975400 ~ 42978004 (+) True LOC110490064
XM_036933381.1 mRNA downstream 342051 43025400 ~ 43042479 (+) False LOC100301866
TU166008 other upstream 98394 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 695107 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 695202 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1122833 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4612680 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 1047523 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1085358 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1116055 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1203247 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 1313431 43996780 ~ 43997065 (+) True G146226

Expression Profile