RNA id: NM_001160695.2


Basic Information

Item Value
RNA id NM_001160695.2
length 1429
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC100301866
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43025400 ~ 43042479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGCGGAAGAAAAAAGATGGAGGCGGCTGTGTTCATTCTATCGCTGGTCGACTGCTGTGCTTTGATTTTTCTGGCGGTGTACTTCGTAATTACCCTCTCCGATCTAGAATGTGACTACATCAATGCACGAGCCTGCTGTTCGAAGTTAAACAGATGGGTTGTACCAGAGCTGGTAGGCCAGGCCCTGGCAACAGTGCTGATGCTTGTCTCCCTGCACTGGTTTGTCTTCCTACTCAACCTGCCTGTGGCCGCCTGGAACATGTACAGGGTTTGGAAGGTGCCCATGGGAAACATGGGGGTGTTTGACCCCACTGAAATCCACAACCGGGGACAACTAAAGTCTCACATGAAAGAGTCCATGATCAAACTCGGCTTCCACCTGCTCTGCTTCTTCATCTACCTGTACAGCATGATCCTGGCACTGATCAACGATTGAGATCCCCATGGCCGTTTTAATCCAATCGGCCAAATCACAAACTATTCAGAATGTGGTGTTCAATATGTCCTGGTCCTCAGCTCAGCTGAAGTCACCTGACACTTCAGCTGACACTCCCCTTGGACACCTAATCATTGctcagccccccccctcccctccattaCGTACTTCTGTGTTCTCATAACTGCCCTGGaattgtgtgcgtgcgtgctttcGTTCAGCCTGTGTCCAACAATGCTGTCCATGCACGGCTCCTCTGGGCAGATGGAAAACATGACAATCATACAGGCTAGATGGTGCATACGATTGGCTAACATATTTTCAGCCAAGAACAACAGCTAGCACATCCTCTTGCAGCCTGCCAAACATCATCTTTGATATGTCAATGCCATATTTGATTGTCATATTTATTTTTGTCTCTTGTCAACATGCTGGAAAATCCTTAAATCCTTGAATATCCTTTGCAGAATACTAACCTGTGTTTTGGCGATTTATTTCTATATTTTCTTGGTCTCTTAACATCAATAAGTTGTAGATCTGCTGCTGAAAGGTGCACATTTGATTGGTATTATAAAATAGTGTTCTCAGGGGAATACATGCACCTGGATTGGATTTGTATCCGATTTTGCATCACTCGACTGTGTATCAATGGGCAATATAACCTCGATTCAATCCGTAGCACTGAAGAGCAATTTCATTGaaggtaatttccaattgagctGATATGTAAGTCTTTAAATTTGTGTAGTGCTTCAGCTTGAATCAAATCCCATGTCTGTATTATAGTTGTATTACATTTCACTATGTATGACAGAAGCACATTTACTACACATCACTATGTATGTTGTTTGAGAATGACCATGTTCCAGCCAAATGTATTTCTCCATGGGGAAAGGGTGCGTGTTCAGATTGTATTAAATCAAACTAAAATTACTTGTTTTTTGTGCTTTTGAAAATAATTTGTGGGGTTTCTTAAATAAACTTGAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166747 lncRNA upstream 8172 43022983 ~ 43023204 (+) True G145271
TU166700 lncRNA upstream 82175 42948921 ~ 42949201 (+) True G145224
TU166681 lncRNA upstream 98166 42930102 ~ 42933210 (+) True G145211
TU166659 lncRNA upstream 135610 42895432 ~ 42895766 (+) True G145191
TU166512 lncRNA upstream 264958 42766106 ~ 42766418 (+) True G145045
TU166796 lncRNA downstream 46340 43088814 ~ 43089105 (+) True G145310
TU166801 lncRNA downstream 55465 43097939 ~ 43098562 (+) True G145313
TU166803 lncRNA downstream 56568 43099042 ~ 43099255 (+) True G145315
TU166805 lncRNA downstream 62782 43105256 ~ 43105481 (+) True G145317
TU166812 lncRNA downstream 68535 43111009 ~ 43111274 (+) True G145324
XM_021563200.2 mRNA upstream 53372 42975400 ~ 42978004 (+) True LOC110490064
XM_021563186.2 mRNA upstream 56222 42971015 ~ 42975154 (+) True LOC110490056
LOC110501569 mRNA upstream 120633 42878213 ~ 42910743 (+) True LOC110501569
XM_021618290.2 mRNA upstream 154013 42876224 ~ 42877363 (+) True LOC110533774
XM_021563129.2 mRNA upstream 348027 42669376 ~ 42683349 (+) True LOC110490029
XM_021563309.2 mRNA downstream 48564 43091038 ~ 43097854 (+) False LOC110490122
XM_021563319.2 mRNA downstream 48564 43091038 ~ 43097854 (+) False LOC110490122
XM_036949040.1 mRNA downstream 49117 43091591 ~ 43097854 (+) False LOC110490122
XM_036949046.1 mRNA downstream 49552 43092026 ~ 43097854 (+) True LOC110490122
XM_021563389.2 mRNA downstream 228192 43270666 ~ 43275284 (+) True LOC110490166
TU166008 other upstream 465346 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1062059 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1062154 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1489785 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4979632 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 688398 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 726233 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 756930 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 844122 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 954306 43996780 ~ 43997065 (+) True G146226

Expression Profile