RNA id: XM_021563309.2


Basic Information

Item Value
RNA id XM_021563309.2
length 2098
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110490122
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43091038 ~ 43097854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCGTCTTTAATGACGTAATCGCTCAGATTGCACGCTGCTGACGTGTATGTAGGGAAGTAGCAAgctggctacctagctagctagcaactttaGCGTTATTTTCATTGGATATGTGCAGCCAGTGACAGCTCATAATGGGAATAATAGCCAACTAATTGAAATAATTGGCATCAGTAGAGAAATCGGAGCAGATTACACAGAGAAGGAATTTGCCCTGAAGTGGATTGATTCCTTCAAGAGCCATGGGCAAACGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTGGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGCGGTTCCAAGACAGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGACGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGCCCAGGGGCAAGGCCGCAGCCAAAGACGCAGGGGGTGGCAGTGAGCAGGGTGCAGCTAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTAGGGGCAATGTGTCTGAGATGAATGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCTGATCTCAGCCTCCTATTGACTGGCGGGACAGACGGACACATCAGAGTGTGGGAGTACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTAGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGCTATATGTCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAATTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACTTTTCTCGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATGTCGCCTTTTCACTACagAAGTTGTACTATGTGCAGGAGTGCCACGGCATTGTGGTGACCGATCTGGCTTTCCTGCCTGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACAGCCGCTGTCAGATGCACACGGTACGAAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCCATCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACGGGGATGTTAATTGGAGGGAGAATGAAGGAATCCCAGACCGCCTTACAATCATCTTCAACAACCACAACCTCTGAGGAACTCCCCTGACGCAACTCAACCCTGGAACATGCATCCATCTCCTACCTATAGCCATCTTACCACACTTACCGAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATCTACTAGAGCCATTTACCCACTCTTAACTCTATACTCCCAACCCAACAACATTCCCTATATCAATGACTATACCCTTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTAGACCTGATTCAGGAGAGCCCAGTGAACCATCCTTGCTCCTTCCACCCACAATTCTGCAAGACTCAAGaatttctctttttttcttgaTCTGTATCAATCAGTCATAATCTTTTTGATTTTATACCATGGTGGGGAGTTAAGGGCTCAGCTTCAGTTCTATATCATCATAAATGTGCAAGGGGTGGGGCCTTTTTATCGTAGATATTTAATAAAATGTAAAATTTATAAATATAAAATGTGAAtcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166796 lncRNA upstream 1933 43088814 ~ 43089105 (+) True G145310
TU166747 lncRNA upstream 67834 43022983 ~ 43023204 (+) True G145271
TU166700 lncRNA upstream 141837 42948921 ~ 42949201 (+) True G145224
TU166681 lncRNA upstream 157828 42930102 ~ 42933210 (+) True G145211
TU166659 lncRNA upstream 195272 42895432 ~ 42895766 (+) True G145191
TU166801 lncRNA downstream 85 43097939 ~ 43098562 (+) True G145313
TU166803 lncRNA downstream 1188 43099042 ~ 43099255 (+) True G145315
TU166805 lncRNA downstream 7402 43105256 ~ 43105481 (+) True G145317
TU166812 lncRNA downstream 13155 43111009 ~ 43111274 (+) True G145324
TU166816 lncRNA downstream 20765 43118619 ~ 43118856 (+) True G145328
XM_036933381.1 mRNA upstream 48559 43025400 ~ 43042479 (+) False LOC100301866
NM_001160695.2 mRNA upstream 48564 43031376 ~ 43042474 (+) False LOC100301866
XM_036933384.1 mRNA upstream 49150 43025811 ~ 43041888 (+) False LOC100301866
XM_021617706.2 mRNA upstream 49150 43032039 ~ 43041888 (+) False LOC100301866
XM_021617697.2 mRNA upstream 49150 43032083 ~ 43041888 (+) True LOC100301866
XM_021563389.2 mRNA downstream 172812 43270666 ~ 43275284 (+) True LOC110490166
XR_002468674.2 mRNA downstream 253273 43351127 ~ 43353661 (+) True LOC110490176
LOC110501584 mRNA downstream 453728 43551582 ~ 43558937 (+) True LOC110501584
XM_021563468.2 mRNA downstream 472436 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA downstream 472437 43570291 ~ 43596359 (+) False LOC110490199
TU166008 other upstream 525008 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1121721 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1121816 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1549447 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5039294 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 633018 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 670853 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 701550 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 788742 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 898926 43996780 ~ 43997065 (+) True G146226

Expression Profile