RNA id: XM_021563389.2


Basic Information

Item Value
RNA id XM_021563389.2
length 1833
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110490166
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43270666 ~ 43275284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGTTACCATGTGACAGAGATAAGTCACATGACCAAGGCTCTGCGTACAGGAAATAGAGACCAGCAAGAGAAAATAGAAAGAAAGTAGCGACAGTGAGGAATTTGCACCAATAAAGTGGGTTTACTGACTGCAAAAGTGAAACGTTGAGCAGAGATGAAGCTGTTGCCAGTGATTTCCCTCCTGGCATTAACCTCAGCTACCTCTGCTTTGGACAATGGTTTGATGAGGACCCCACCCATGGGATGGATGTCCTGGGAGCGTTTTCGCTGTAATATCGACTGTGAGAATGATCCCAAGAACTGCATCAGTGAGAATCTCTTCAGAGACATGGCAGACAGACTGGCTGAGGATGGGTGGAAAGAGATGGGATATGATCATGTCATGATAGATGACTGTTGGTCCTCCATGCTCCGGGATAAAGATGGACGGCTGCAGCCCGACCCACAAAGGTTCCCTGGGGGCATTGCCAAGCTGGCGAGGTACCTCCATGACCGCGGCCTGAAGCTGGGCATCTATGGGGACCTGGGCACACACACCTGTGGAGGGTACCCTGGCACCACGCTGGACAAGATTGATACTGATGCCCAGACGTTCGCTAGTTGGGGTGTGGACTTCCTGAAGTTGGATGGCTGTTACTCCAATGAAGAGGAGCAACAGAAGGGTTACCCTCTCATGTCCAAGGCTTTGAATGCAACAGGCCGTCCAATTGGCTACTCCTGTAGTTGGCCAGCCTATCGGGGTGGACTCCCTCCCAGTGTGAATTACACTCTGCTGGGGGAAATCTGTAACCTGTGGCGTAACTATGATGACATTCAGGACTCGTGGGACAGTGTACAAGACATTACAGACTGGTTCTTTGACAACCAGGAGATACTGCAGCCTGAAGCCGGCCCTGGACGCTGGAACGATCCTGACATGCTGATCATAGGAAACTTTGGCCTCAGTGTGGACCAATCACGCTCTCAGATGGCTCTTTGGGCGATCATGGCTGCACCTCTCATTATGTCCAACAACCTTCGAACCCTAAGCAGTGAGGCCAGGGCCATCCTGCAGAACGGTGCCGCCATCGCCATCAACCAGGACCCGATGGGCGTCCAGGGAAGACGCTTGCTACAGGAGAGGAGTCAGATTGAAGTGTACTGGCGGCCCCTCTCCCAGTCAGCCAGTGCTCTGGTGTTCCTCAGCCGTCGCCAGGACATGCCCTATCGCTACCACACCTCCCTGGCCAAGTTAAACTACACAGCAGGCAGCTACGAGGCTTATGACGTATTCACTGGGAAAACATTGAGTGGACTGTCTGCCGCCACAGAGTTCACCGTCTCCATCAACCCCTCAGGAGTCGTCATGTGGTACGTCTATCCCAAAATGCACTACGAGCATCCGCAGGATGATGGTAGATACCCCTACTTCCGACAGAAATACAGGATGTCCTCCTCGCTCCGCTTCCACAAGCCGAGGGTTGTGCCTCCTAGTCTGCTCTGAGGGGACGTGAAGTAAGCAAGCAGGAGGGCGAATCTGTTGTTTTAAGAAGTCCTCCATAAATCCAGATCCAATCAAAGATATTTGAATCAGGAAGAATATGGATATTTTTTTTGCGCTGTTGTGTTTTAACCCATATGTAATCTTGGCAACCCAGAACTTAAATCGTGCGCCAGCTACTTGGCTAAGGTCTTGGGGTAGCCGAAAGAGAAAAGATACTAGAACCAGTGGCGGAAACAGGTCGGCAGCTTCATCACCGTCTCTGTCTGCAACATTTTATGTTATGTGTGTCTGCCCACGAGAGATTAAACCATGTGTAATGTTTGAACATTTATAAAAAGTagattttg

Function

GO: NA

KEGG:

id description
K01204 NAGA; alpha-N-acetylgalactosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166907 lncRNA upstream 21380 43249037 ~ 43249286 (+) True G145415
TU166903 lncRNA upstream 26898 43243501 ~ 43243768 (+) True G145411
TU166893 lncRNA upstream 43915 43226252 ~ 43226751 (+) True G145403
TU166892 lncRNA upstream 44651 43225797 ~ 43226015 (+) True G145402
TU166830 lncRNA upstream 85322 43135470 ~ 43185344 (+) True G145342
TU166914 lncRNA downstream 34884 43310168 ~ 43359884 (+) True G145420
TU166996 lncRNA downstream 127175 43402459 ~ 43402945 (+) True G145493
TU167011 lncRNA downstream 150153 43425437 ~ 43425641 (+) True G145508
TU167016 lncRNA downstream 155427 43430711 ~ 43430935 (+) True G145513
TU167607 lncRNA downstream 431485 43706769 ~ 43715909 (+) True G146039
XM_021563309.2 mRNA upstream 172812 43091038 ~ 43097854 (+) False LOC110490122
XM_021563319.2 mRNA upstream 172812 43091038 ~ 43097854 (+) False LOC110490122
XM_036949040.1 mRNA upstream 172812 43091591 ~ 43097854 (+) False LOC110490122
XM_036949046.1 mRNA upstream 172812 43092026 ~ 43097854 (+) True LOC110490122
XM_036933381.1 mRNA upstream 228187 43025400 ~ 43042479 (+) False LOC100301866
XR_002468674.2 mRNA downstream 75843 43351127 ~ 43353661 (+) True LOC110490176
LOC110501584 mRNA downstream 276298 43551582 ~ 43558937 (+) True LOC110501584
XM_021563468.2 mRNA downstream 295006 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA downstream 295007 43570291 ~ 43596359 (+) False LOC110490199
XM_021563477.2 mRNA downstream 295008 43570292 ~ 43596359 (+) False LOC110490199
TU166008 other upstream 704636 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1301349 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1301444 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1729075 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5218922 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 455588 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 493423 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 524120 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 611312 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 721496 43996780 ~ 43997065 (+) True G146226

Expression Profile