RNA id: XR_002468674.2



Basic Information


Item Value
RNA id XR_002468674.2
length 1272
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110490176
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43351127 ~ 43353661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAAACAATGCTACCGTTTGAAGGGTGGGCAGAGATGAGCACTGACAGGCACTGGCCATGCCCAAGTCCTGTGAATAAGCGCCAGGCCAGACACGCCCACAAGGATACCATGAGTCAGGAGACCAGTCCAATGTGTCAATGTTTTGACCTTTATATGACTTGTGTGGTGGTTTGCAATGACATGACCTGGGATCGAACCCCTAACCTTCCAATTTCAGGGCAGACTGTTTAACCACAAGGTCACTGAATGTTTTCTGCAAAAAAATAATACTGCTAATTTAAAACGTATCCgaaggagggaggatagaggaatgCCTAGCGATGGAGTTCAGTATATCTGTGTAAAGAGGACAGTATGTTATCTTCAGAGAAAAGCAACCAGAAACCAAGAACAGATAAAGCCTTTCTGTGACTCTGGGATTATAACTAACTATTTACTCATACAATTTAATTGGTTGGTGATAAACAAATTACAAACCTATCTGATTGGACCTGCATGATACTGTAGTATCACTTAACCTTTTGAAATTACAGGGCAGATgttgatgtacagtatataacccggAAAAGCTATAAACCCATGTGGTGAAATAGTTTAGGTGCTTGCTATAAGCAATATGGTGTAACTGCAGACCGCAATTAGGGGTGTTTTTTGAGGGTTATGGTGTTTCCAGTAAACGTTGGTGTGTGGTGTCAATGACACCTTGAATGGGTTGATCACTGAGGTCATTGACATGGGTATGATTCCAGAGTCATTACTGTAAACTGGTTTCGATTTCTATGTTTTTATCGGTGGCGCGATCATcatgacatcatttacagagctATTTAGCTATTTAGTCACTTTCAGATGAGGCGTGGCTCTAGAGTTACTGTCATTATTATTGGCTGATTACATTTTAGAACCTGGATGTAACTGCTGTAGGCTAGTTGGTAGTGGaatgacagggagacagacacacagacgtgAGAATCCGTCTCATTTCTGGCACAGGATGTTGTTGGAGAGTCATGCATTCTTACTTTCTATTTCTAAACCACCATGCCTGCATGCATAAAGAGACTCTTTTCGGTGGAAATCCCCAAGGGATTCTCAAAGGAGATTGTTTCCTGAAGCAGGAGTCTGGAATGCAGCAAACAAGTCTGGGCTCCCATTGGAATGTACACCTACTCCCATTTATATGCACACGCAGACACAAGCATGCatgtacatgtacacacacatatacacacacttgaAAACAGGTGGACACAAATGCATGTGTaggaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166907 lncRNA upstream 101841 43249037 ~ 43249286 (+) True G145415
TU166903 lncRNA upstream 107359 43243501 ~ 43243768 (+) True G145411
TU166893 lncRNA upstream 124376 43226252 ~ 43226751 (+) True G145403
TU166892 lncRNA upstream 125112 43225797 ~ 43226015 (+) True G145402
TU166830 lncRNA upstream 165783 43135470 ~ 43185344 (+) True G145342
TU166996 lncRNA downstream 48798 43402459 ~ 43402945 (+) True G145493
TU167011 lncRNA downstream 71776 43425437 ~ 43425641 (+) True G145508
TU167016 lncRNA downstream 77050 43430711 ~ 43430935 (+) True G145513
TU167607 lncRNA downstream 353108 43706769 ~ 43715909 (+) True G146039
TU167612 lncRNA downstream 365695 43719356 ~ 43719858 (+) True G146042
XM_021563389.2 mRNA upstream 75843 43270666 ~ 43275284 (+) True LOC110490166
XM_021563309.2 mRNA upstream 253273 43091038 ~ 43097854 (+) False LOC110490122
XM_021563319.2 mRNA upstream 253273 43091038 ~ 43097854 (+) False LOC110490122
XM_036949040.1 mRNA upstream 253273 43091591 ~ 43097854 (+) False LOC110490122
XM_036949046.1 mRNA upstream 253273 43092026 ~ 43097854 (+) True LOC110490122
LOC110501584 mRNA downstream 197921 43551582 ~ 43558937 (+) True LOC110501584
XM_021563468.2 mRNA downstream 216629 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA downstream 216630 43570291 ~ 43596359 (+) False LOC110490199
XM_021563477.2 mRNA downstream 216631 43570292 ~ 43596359 (+) False LOC110490199
XM_021563459.2 mRNA downstream 216632 43570293 ~ 43596359 (+) True LOC110490199
TU166008 other upstream 785097 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1381810 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1381905 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1809536 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5299383 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 377211 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 415046 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 445743 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 532935 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 643119 43996780 ~ 43997065 (+) True G146226

Expression Profile