RNA id: LOC110501584



Basic Information


Item Value
RNA id LOC110501584
length 965
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110501584
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43551582 ~ 43558937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTCAGCTGACTGCAGTACACCTTGTGGACTCTCATTACTGCGTTGACCCAGCTACGTTCATCTAGGTCTTGTGCACCTGTCCACCATGCTACACGTGGAGCTACCCCACGTCAACATCCTCTCCAAGATGGACCTCATCGAGCAGTACAGCAAACTGGCTTTCAACCTGGACTTCTACACAGATGTTATGGACCTGACATATCTGCTGGATCACTTGGCTGCGGACCCTTTCTTTAGGAAGTTCTTCAAACTAAatgagaaattcgcaggggtcatTTGTCATACAAGACTACGGCCTTGTCTCTTTTGTGCCTCTCAATGTGCAGGACAGGGAGAGTATGACGCAGGTCCTGTGGACAGTGGACAAAGCCAACGGCTGCTGCTTCGGAGACCTGGAGGAGAGGAATCTGGCATGCAATGATGTCAGCCACTGTGGCAGCAGACTTTCAGTTCACCTTAACTCTAGGAGTGCAAGAGAGGTATGTTGGAGATGGTGAAAAGACTGGAGGAGGTGGTGATGGATCTGTAAATCACCAGACACCAATCAATGGATGCTGCTGACCTCCATGTTGCTTGCACTGTGCCAGCAAAGGACTGACAGTACATTTGTCCAGTGGAAGTGGTGTGTCAAACGCAGCAAATGCTATTCTTCTTTTCCTCTTTTCCTGAACACGTAAATGTTCACTCTTTTAGCTTGATATGGCTGGTTCTGGTTATATAGAGGAGAGAAAGGGTTAGAAGCATCAGACTGCAAACATAATCCAAACCAACTGCTTCTTACCCCACAATCCAAGAATTAGATCAGTCTGGGTTAAGAATTTGAATTGATATATCCTTGGCTTTGTGGCTGGGTtacagtgccgtgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167016 lncRNA upstream 120647 43430711 ~ 43430935 (+) True G145513
TU167011 lncRNA upstream 125941 43425437 ~ 43425641 (+) True G145508
TU166996 lncRNA upstream 148637 43402459 ~ 43402945 (+) True G145493
TU166914 lncRNA upstream 191698 43310168 ~ 43359884 (+) True G145420
TU166907 lncRNA upstream 302296 43249037 ~ 43249286 (+) True G145415
TU167607 lncRNA downstream 147832 43706769 ~ 43715909 (+) True G146039
TU167612 lncRNA downstream 160419 43719356 ~ 43719858 (+) True G146042
TU167620 lncRNA downstream 163926 43722863 ~ 43723100 (+) True G146050
TU167613 lncRNA downstream 164901 43723838 ~ 43724222 (+) True G146043
TU167623 lncRNA downstream 170584 43729521 ~ 43729792 (+) True G146053
XR_002468674.2 mRNA upstream 197921 43351127 ~ 43353661 (+) True LOC110490176
XM_021563389.2 mRNA upstream 276298 43270666 ~ 43275284 (+) True LOC110490166
XM_021563309.2 mRNA upstream 453728 43091038 ~ 43097854 (+) False LOC110490122
XM_021563468.2 mRNA downstream 11353 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA downstream 11354 43570291 ~ 43596359 (+) False LOC110490199
XM_021563477.2 mRNA downstream 11355 43570292 ~ 43596359 (+) False LOC110490199
XM_021563459.2 mRNA downstream 11356 43570293 ~ 43596359 (+) True LOC110490199
LOC110501593 mRNA downstream 38377 43597314 ~ 43599427 (+) True LOC110501593
TU166008 other upstream 985552 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1582265 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1582360 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2009991 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5499838 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 171935 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 209770 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 240467 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 327659 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 437843 43996780 ~ 43997065 (+) True G146226

Expression Profile