RNA id: XM_021563468.2


Basic Information

Item Value
RNA id XM_021563468.2
length 9106
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110490199
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43570290 ~ 43596359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAAGGTTTTCCCTCTAAAATTCCGAGCTAATATTAATTTTAGGCTCAACTGAATTTTGATATTTAGAACATGCTGTGACCAGATTGTAGCTGATTTGTGTGACTATCTTATTAATTGTTTTCACTTCCTCATTCATTCTTGCGACCTCATCCCATAGTATGCGCTCCGTAGTTCGCACACGATGACACATCGACACTGGTGAAATGCTACCCCCTCAGTCCTTGCCCAGAGCAGGAGTCTTTCAACCAAACGATATTCCTTGAACGTGGatacatcataatgaaacaaTGTATTTAATAGTAATTATTATTCAGACTTCCAAATCATGAAACATAATCACTCAATCATCAGGTGCCTGCTTGGCCTGTCGCATGTTGAATTGTTAAAAAACTGTCGATAGAATGGAACAAAGAAATTATGCATGTTTTGAGAATAGTTACATTTAAAACCCAAACATTACTTTACAAATGCAACCACTCTTGTGCCCGTATGCAATTGTAAAATGAACGAATCCACTCCGTGTTCCCACTGTGCGCAATCCGTACTTTACTTCTGCCTGTACGGCTCAGTAAAATGGCTGTATCTCGCGGAGCCTCGTGCTGGTTCGCTCCGTTCCTTGCGTCTACTCTCGCTCAGTAATAGAACCCCCAGAATATATGTCTGTTTATGCATCCTTGAGGTTTATTATTACGTGTCCAATTATTTTCACATCGGAATCAGGAGACAACCGGATTCGGTCCGGTGAAAGGGGTGGGAATGAATCGGGACAAGGATAAATGGTTATAAACAATTATTTATATTCAATGCTAGCGTTTGATTGTGACTGACTCGCCGAGAGAGGGGGGTATTATGGCCGCTCAGGTCGCCAGCGCCGCCACTCTCAACACAAGCCCGCCTTCCGAACTAAAGAAGCCGGATCGAGACCCAAATGAGGATTCTATACTGGGGGAAAAGCAGCAGGAAAACAAGCATTCGGGATTAGAGCGCGGATCTCCGGGCCGGGGGGATCTGCAGGACGGGGCCGATGTTGGAAatgcagggggaggaggggaaccTGAGATGAAGAACGGGAACGGGAACCCGTCCAGGACTATTAATAATCAGAATGATTCCATCGGATCCGAGGGGAATAACCATCCCGGGATGGTACACCACCATGGGTCCGGTTTTCCTCCACCTTCTTATGGATACAGTCAACACTACGGCCGGGCCCCTTTTCATCAACATGGCGGACAACAAAGCCCTGGCATGGCAGCTGCTGCAGGTCCAGCCGTGCAGTCGAGCAATATGATGGACCCATATCAACCCAATTCGCACGACCATGGCTTTTCTAACCACCAGTTTAACAATTACAATCCATTCCCGAACAGAACTCCCTATTCTGGCCAAGGATACGGCATGAACCCCTCGCGTAATACCCAGGCTCCGGCTGCTGGGGgacagccagctaacgttaagcAGCAACCAGCAGGAGGACCCACAGCAATGGCTGCATCTTACAACAATCAGAGATATAATATGGGGAATCCACAGCCAACATCTACCCCAACCCTCAACCAGCTCCTAACCTCTCCGAGCTCCACGCGGGTATATCCAAATTACCCATCTAGTGAATATAGTAATCAGGAAGGAGCTAGTAAGGGACCAACAGACACGGGCAGTAGCGGTCAGTATGGAGGGGGAAATCCGGGTTGGCAACAAAGGACCCATCATCCGCCGCCTATGAGCCCTGGAAGTACAGGGCAACCCCTAGGTAGAAGCCAGCCCCCAGGTGCAATGGATCCGATAGCTAAAATGAGAGGCCAGCCGTATGTTGGGGGCAGTCCATACTCCCAACAGCCTGGGCAGGGGCCTCCCCCAGGAGCCCAGCAGGGTCATGCATACCCGGGCCAAGGCTACGGTCCACTTAGCTCCCAGAGATACCCGGTGGCCATTCAGGGCCGCACCCCTGGGGCTATGGGAGGCATGCATTACGGGCAGCAGATGCAATCTTATGGACAGCAGGGACCAGGAGGCTATGGGCCTCCGGGCCAAGGGCCCTACTACAGCCAACAGGGCCAGGCTTCACACCCAGGCCAGCAGCAAGGGCCCTACCCCCAAGCATCTCCAGGACAGCAGGGTGGTCAAACACCCTACCCTCAGCAGCCCCACCCTTCCCAGACGTCATCCTCACATGCCCAGGGTGGGCCGCCCTATCCGCAGCCCCATATGCCCCCCCAGTCCCAGGGCCCGCAGCCAGGTCCATCCCAAGGGCCCCCACAGTCTCTAACTCCCTACTCCCAGGGCCCTGTCCCGGCTCAGACCCAGTCTGGTCAGCCTCCTTACCCCCAGCAGCAGGGGCCTCCCAGCCAGCCACCACAGCAGGCCAGCTCCCAGGTCCCAGCAGGGTCGCAGCCCCAGCTTAGCTATCCACCCACGCAGGGCCCACAGCAGCTCTCCACACAGCAGCAGCAACCCCAGACACCCGCTCAACCCCCTCAGCAACCACCAGGTCACAGCCAGCATCCACAGGTCCAGCCTGCATCCTACTCCCAGAATCCTccacagcaacaacagcaacagtcACAGCAGTCACCTTACCAAcgcttccctcctccaccacagCAGGAGATATCCCAGGACTCGTTCAGTTCCCAGTCTAGCGCCCCTCCCTCCAACCAGCCCAAAAGTGGCTCGGAGGACGTCAGCGTACAAGGCCGGCCGTCCAGCCTACCGGATCTCTCAGGCTCCATCGATGACCTGCCCACGGGCACGGATGGCGCTCTGAGTCCTGGCGTGAGCACTTCAGGTGTTTCAAGCAGCCAGGGTGAGCAGAGCAACCTGGCCCAGTCGCCCTTCTCGCCCCACACCTCTCCCCATCTGCCAGGCATCCGAGGGCCCTCGCCGTCGCCCGCCGGCTCCCCTGCCAGTGCCACCACCTCCCGCACGGGACCCCTCTCACCCGCCACAATGCCAGGGACCCAGATGCCCCCTAGACCATCGAGTGTTCAGTCTGACGGGAGTCTGCACCCCGCCATGAGCCAGTCTCCCATGGCCCAGGACAGAGGGTTCATGCAGAGAAACCCCCAGATGCCCCCCTACGGCTCACCACAGTCTGCCTCTCCCCTGTCACCCCGACAGTCCTCTGGAGGCCAGATGCACCCTGGGATGGGACCTTATCAGCAGCAGAACAACTCCATGGGGGGCTACGGACCTCAGGGTGGGCAGTATGGCCCACAAGGTTATCCCCGGCAACCTGGATACAACAACATGCCCAATGCCAACTACCCTGGCATGGGCAACCCCATGAACCCTGGCAACCCCATGTCTGGGCAAGGGGGGCTGCCATTTGCAGGCATCCCCCCTGGTAGAATGCCTCCGGGCCAGGTGGGAGTGCGTCCCTATGGCCCCAACATGGGGCCCAACATGCCACCCAACATGGGTAACATGCCACCTCAGGTGGGCTCAGGGATGTGCCCTCCCCCCGGCCTCAACCGGAAGGCCCAGGAGGCTGCAGCTGTAGTCATGCAACACGCTGCTACCAACTCCATACACAGCAGGATGCCTGGCTACCCCAACTTGCCCCCTGGCATGATGGGCCCTGGCGCCCCCTATGGCCCTCCCATGAACAACATGCCTGGCATGATGAACGCGCAGGGCGGCTCGCCTTTCCCTATGGGGCCCAACATGGCCAATAACTCCAGTGGTTTGGCCCCAAGTCCAGAGTTTGGTATGGATGGAAAAATGAACCAGGGCCAGAAGATGAACAACAAAGTGGACGGAACACCGAAAGCGGAACCGACTAAATCCAAGAAGTCGAGCTCTTCCACGACAACCAACGAGAAGATCACCCGTCTGTACGAGTTGGGCCCCGAGCTCGAGAGGAAGATGTGGGTGGACCGCTACCTGGGCTTTATCGAGGAAAAAGCCATGGGCATGACCAACCTGCCTGCTGTGGGCCGCAAACCCCTAGACCTCTTCAGACTCTACGTCTCGGTCAAGGAGATTGGAGGCTTCGCACAGGTCAGTGTGAACAAGAACAAGAAGTGGCGTGAGCTGTCCACCAACCTGAACGTTGGCACGTCAAGCAGCGCCGCCAGCTCCCTGAAGAAGCAGTACATCCAGTGTCTGTACGCCTTCGAGTGCAAGATTGAACGCGGGGAGGACCCCCCTCCTGAGATCATCACTGACAACAAGAAGGCCAACCAGGCCAAGGTCCAGCCACCCTCCCCAGCTGGATCAGGTTCTCTCCAGGGCCCTCAGACCCCCCAGTCCACCAGCAGCTCTATGGCCGAGGGCAGCGACCTCAAGCCCCCCACACCTGCCTCCACCCCACACCCCATCCAGATGCCACCCGGGGCCAGGAGCAATGTGGCCCTGCAGGACCCATTTGCTGATGGTAGTGACCCTACTTTCCCCAGAAGGAACTCCATGACCTCTAACTCTGGCTACCAGTCTGGCATGAGCACCCCAGAGATGCCAGGTCGCATGGGTCCAGGGCCCTATGAGGGTCCAGGGCCTAACAAAGACCCCTTTGGTGCCATGCGGAAAGTTGGGGAGCAGTTCTTGCCTGCCAGTCAGGGTCCTAACAGTGGGATGGCTGAGCAGCAACAGTTTAACCGTGGGCCTCCACCAGGTGCTATGGGGAACATGTCGATGGCTCAGAGACAGCAGTATGGACCAGGCCCTTACGGACAAGGCTACGAGAGGAGGCCAGAGCAGGGGATGGGCCCAGAGGGCAGCATGGGATCTGGTGCACCGCAGCCAAACCTGATGCCCGCTAACGCCGACTCAGGGATGTACTCGCCAAACCGCTACCCATCACAGCAGCAGCCACGGAATGATTCCTATGGTAATCAATATCCTGGCCATGGTACTCCCCCTGGTGGTTCCTATCCCAATCAACAGCCAGGAATGTACCCACAGCAACAACAGAACTACAAGCGTCCTGTGGAAGGGGGCTACCCACCAGCGAAGCGACACGAGGGGGAGATGTACAGCGGGCCCTTCAGTGCAGGGCTGCAGCAGCAACAACCCCAGCAGCAGCCAGGGGCGGCCTCTGCACCCCCTGCTGGCCAGCCAGAGATGTACCAACTACAGTACAGCAGCGGCTCCTTCCCCGGCACTGACCGCCGCCTGCCTGGTCCCCAGGGCCAGTTCCCCTTCCCCTTCAACAGAGAGCGCATGCAGGCCACCACTGGGCCCAACGCCCAGCCCTCCATGCCCCCTCAGATGATGCAGCCAAGCCCTGACGGCCCCCAGGGTGGCGCATGGCAGGGCCGCGGGGAGATGAACTATCCTGGCAATTACCCCAACCGGCAGGGTGGCCCCCCAGGGGGCTCGGCCCAGGGACCCGGACACCTTGGCATGAACCGCGGTTCGGAGGAAATTATGTCATCGGAGCAACGCATGAACCACGAGGGCCAATGGGGGCCAGGTCAGATGGGTCCTCGGCAGCCCCCCTACGTTCCTGGAGGGACGGCCCCGCCCATGACCCGCACCCTGCAGTCCAACTACCAATCAGCTCAGGCCATGCAGAACCACATTCCACAGGTGTCCAGTCCCTCCCCCATGCCCCGTGGGGGCCCCATGGAGAGCCGGACTTCGCCCAGTAAATCTCCCTACATGCACAGTGGCGTCAAGATGCAAAAGGCAGGGCCCCCGGTCCCTGCCTCTCACATAGTGCCCCAGTCTGTGCAGTCCCCTCTGATCCGTAGAGATATGCCCTTTCCCCCAGGCTCAGTGGAGGCCACCCACCCTATCCTAAAACCACGCCGACGCCTCACCACGAAAGATATCGGGACCCCAGAGGCTTGGAGGGTGATGATGTCCCTCAAGTCTGGACTGTTGGCTGAGAGCACGTGGGCCCTCGACACCATCAACATCCTCCTGTATGACGACAACAGCATCTCCACCTTCAACCTCAATTTGCTGCCTGGCCTGCTGGAGCTGGTGGTGGAGTACTTCCGGCGCTGCCTCATCGAGATCTTCGGCATCCTGCGCGAGTACGAGGTGGGCGACCCCGGCCAGAGGACTCTACTGGACCCTGACGCCCTGGACAGAGACTGGAGCTGCACGGATGATGGGGAATCAGGGGTGGAggacatagagggagaggaggatgacgacgatgaggaagaagaggtggTGGTGCAACCTTCAAAACAGCCGGCCGGGACGACAATCGAGGGACAGGCTCCGGTGAAGCAAGAGGATGAGCAGGAGTCGTGCTCAGAACGGGACACTCTGAAAGAGAAGGACGCTGAAGATGAGGAGAAGAGCTTCTCTAACGTTGAGCAGCCCAGCTCTTCATCGGACACTCCTGCCCTGGGCCCGGCTACCCCCCAGGAGAGACCCAAACAGGCTAGCAAGTTCGACAAGGTCCCCCTGAAGATGGTACGGAAGAAGGACCCGTTTCCGGCAGGCAGGGCAAGCCAGAGAGGAAAAGTGCAGGTGTTTGACAGTGGGCTGCTCCACTGGAGCGCCGGCGGGGGAGACAGCACAGAACACATCCAGACCCACtttgagaggagggaggaatttCTGGTCCCACGAGAACGAGTGCTGGTCGTCCCAACAGCCAAGAGGAAAAGGCTAGAAACCGAGATGGTGGGAGACAAGGACAATGCTACCCCCACAGAGAAAGATAAGCAGAAAGGTGGGGGAGATCAGAGGCCCTCCCAGCCATCATCTACAGAGAAGGCCTCAACAACAACCAACACCTCAGCCGACGGTAAGGAGGGGAAGTCCGAGCACTCGGACGCTGAGACCGAGGAAACGTCACAGACGGAAGAGCCCCAGAGCCAGCAGGAGAACGACAAACCGAGCGGCCCTCCTCATCAACAAGTCCCCCAGCGTGTGGTGGAGGACGAGCCTCACAGCAAGGACGAGGGCCCACTGCTTACACTGGCCAACTGGCAGGATGCTCTAGCCCGCCGCTGCGTCTGCGTCTCCAACATCGTGCGCAGCCTCTCCTTCGTGCCTGGCAATGACCAGGAGATGTCCAAACACCCTGGCCTCATGCTGCTGCTGGGTCGCCTAGTGCTGCTGCACCACCGCCACCCTGAGAGGAAGCAGGCCCCGCTCACCTACGAGAAGGAGGAGGAGTCTGATGACTGCCTTGGACAGAGGGACGAATGGTGGTGGGACTGCCTGTCGCTGTTGAGGGAGAACTGCCTGGTCACTCTTGCCAACATCTCTGGCCAGCTGGACCTCTCCATCTACCCTGAGAGCATCTGCCTTCCGCTGCTGGACGGCCTCCTCCACTGGGCCGTGTGCCCTTCGGCTGAGGCCCAGGACCCCTTCCCCACGTTGGGGCCCCACAGCGCAATGTCACCCCAGAGACTGGTCCTGGAGACTCTCAGCAAGCTGAGCATCCAAGACAACAATGTGGACCTGGTCCTAGCCACGCCACCGTTGGGTCGGTTAGAGAAGCTGTATGGGACCTTGGTGCGGCTGGTTGGGGAGAGAAAGGTGGCCGTCTGCAGGGAGATGTCGGTGGTGCTGTTGGCCAACCTGGCCCAGGGAGACAGCATGGCAGCGCGCGCCATTGCCGTGCAGAAGGGAAGCGTGGGTAACCTCCTGGGCTTCTTGGAGGACAGCCTGGCGGCCACCCAGCTACAGCAGAGCCAGAGCTCTCTGCTGCACCTGCAGGGGATGCACTTTGAGCCCACCAGTAATGACATGATGCGGCGGGCAGCCCGGGCCCTGCACGCCTTGGCCAAGGTGGAGGAGAACCACTCAGAGTTCACACTCTACGAGTCACGCCTCCTTGACCTCTCAGTGTCACCTCTCATGAACTCGGTGGTGTCTCACGTCATCTGCGATGTACTCTTTCTGATTGGCCAGTCATGACAGCTGTAGGGAGCTTCGGCTCCACCTCCTCTTGGTTTCGTCCCCCCCTCACCCCCTGGTTACAACCTGGCTTGTATGTGTGTAGGGGACAGGGAAAGTTCAAGTGACTGTTTTTAATTTATGCAAACCCTTCAGATTCCATTCTCTGAGCCTTCTCTCGCTGTTCTCACTCAAGGAGAAGGGACGTCACAAAGCTGCAGTGGTGGATTTACAAACCAGAGACTCCACAAACTGACACAACTTGTAACATTAATGCCAACTAGATGACATAGTGCGGGAACCCGGGTTTAGGAGTGTTACACACGTTTGGGGGGGGTGTAtttttaataaagatgaataaATAGCTGAAAAACAAACTGTAACCAAAGTTGCTGTCTTGTTTACAGTAAGTTTGGGCATAATGTGTGCCCTTGCTCTCTCGAGAGCACAGTGAGTGAGTCAGACTCTGGTTCATGTTTGGAGGTAAAGCAGACTGAGGAACAGCTTGATCTGATGGTATAGTGTCTGTAATTGGATGCTTACCAGTCAGCCTACAACTCAGTTGGCTGTTGAGACACCTTCACTGGGAGGCCTGTGCAGTAGATTGTAGGGCATTTTCTGTACCGTACTGCTCTTTATTGTCAGGCATTCTGTAAACAAGTTTCATACAGAAAAACGTTGACAATGCAGCTCTACTAGAGTTTTAAAAGGTAATTTTAGTTTTGACGTTAAAAGCTAAAAGGCTTTCCCCAAAGTACCGAGAACCTACTACAACACCCTTACCTCCTCTCTTTAGCCCTTGATTGTATGAATTGACCCGTGTAAAATAAATCACCTCTTAGGACTGGTTTTCAACTAAAGATGCAGCTTTGCTGTGGTGTATATATATGATGTTGTACATTAcacttcctttctctgtctctgtctgtgtcactATTCACACACTTTTTGTTGATGAGGAAAGGAAGGTGACCCATGAGTTTGGTTCCTGTCATCCAGTCCCTGCTGATAGACCCTCTCTCCTCCGGCCTCTCACTCCACGGCTCCTTAGTACGGCAGACTCGGATCAAATCTGTTCTCCTGGTacaaaaaaaaactctagatgaAGAAACACACATTTGACAATTCTTTTCTCCAGTGATATGGATATTTGTATTTCAGACTGTAGCTAAAAACATGTAAATTCCTCCTATCCCCTTTTTTTTGGTTCAATGAATATCATTTATTCAGTATGAAATCTTTATACTATATGTTCCACGTGGTAAGAATAAATGTACATTAAATCTTCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167016 lncRNA upstream 139355 43430711 ~ 43430935 (+) True G145513
TU167011 lncRNA upstream 144649 43425437 ~ 43425641 (+) True G145508
TU166996 lncRNA upstream 167345 43402459 ~ 43402945 (+) True G145493
TU166914 lncRNA upstream 210406 43310168 ~ 43359884 (+) True G145420
TU166907 lncRNA upstream 321004 43249037 ~ 43249286 (+) True G145415
TU167607 lncRNA downstream 110410 43706769 ~ 43715909 (+) True G146039
TU167612 lncRNA downstream 122997 43719356 ~ 43719858 (+) True G146042
TU167620 lncRNA downstream 126504 43722863 ~ 43723100 (+) True G146050
TU167613 lncRNA downstream 127479 43723838 ~ 43724222 (+) True G146043
TU167623 lncRNA downstream 133162 43729521 ~ 43729792 (+) True G146053
LOC110501584 mRNA upstream 11353 43551582 ~ 43558937 (+) True LOC110501584
XR_002468674.2 mRNA upstream 216629 43351127 ~ 43353661 (+) True LOC110490176
XM_021563389.2 mRNA upstream 295006 43270666 ~ 43275284 (+) True LOC110490166
XM_021563319.2 mRNA upstream 472436 43091038 ~ 43097854 (+) False LOC110490122
LOC110501593 mRNA downstream 955 43597314 ~ 43599427 (+) True LOC110501593
XM_021563502.2 mRNA downstream 34106 43630465 ~ 43651752 (+) False LOC110490231
XM_021563510.2 mRNA downstream 34107 43630466 ~ 43651752 (+) False LOC110490231
XM_036949199.1 mRNA downstream 34107 43630466 ~ 43651752 (+) False LOC110490231
XM_036949207.1 mRNA downstream 34107 43630466 ~ 43651752 (+) False LOC110490231
TU166008 other upstream 1004260 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1600973 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1601068 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2028699 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5518546 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 134513 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 172348 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 203045 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 290237 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 400421 43996780 ~ 43997065 (+) True G146226

Expression Profile