RNA id: TCONS_00027719


Basic Information

Item Value
RNA id TCONS_00027719
length 335
RNA type mRNA
GC content 0.53
exon number 2
gene id XLOC_013868
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8506178 ~ 8608414 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGACCTGAGCATCGCGCAGCCATGCCATCCGAACTAGAGACCGCCATGGAGTCCCTCATCATGGTTTTCCACCGATATGCTGGAAAGGAGGGCAGGAGCGGCACCCTGACCCGACGGGAACTCCGAATACTAATGGAGAACGAGCTCTCTGGGTTCCTTAAGTCTCAGAAGGATCCGACATTCGTCGACAGAATTATGAAAGATCTGGATGCCAATGGAGACGGCGAGGTTGACTTTGAGGAGTTTGTGTCTTTGGTCTTGGGTTTGTCCATCGCCTGCGAGGCTTGCTACAGGGTGGATTTAAGGAAGTCACAAAGCTGGAACCTTtgagt

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-35 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; intestinal bulb primordium; and sensory system. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

Ensembl:

ensembl_id ENSDART00000185264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029872 lncRNA upstream 182615 8422912 ~ 8424378 (+) True XLOC_013866
TCONS_00027712 lncRNA upstream 638326 7966116 ~ 7968667 (+) True XLOC_013863
TCONS_00029695 lncRNA upstream 641573 7961521 ~ 7965420 (+) True XLOC_013862
TCONS_00027710 lncRNA upstream 657090 7941914 ~ 7949903 (+) True XLOC_013860
TCONS_00027705 lncRNA upstream 684399 7920135 ~ 7922594 (+) True XLOC_013858
TCONS_00029873 lncRNA downstream 65955 8673682 ~ 8677972 (+) True XLOC_013870
TCONS_00029874 lncRNA downstream 153145 8760872 ~ 8761674 (+) True XLOC_013871
TCONS_00029696 lncRNA downstream 328608 8936335 ~ 8936623 (+) True XLOC_013872
TCONS_00027722 lncRNA downstream 377470 8985197 ~ 8991685 (+) False XLOC_013874
TCONS_00027735 lncRNA downstream 515214 9122941 ~ 9125272 (+) True XLOC_013878
TCONS_00027716 mRNA upstream 104672 8481802 ~ 8502321 (+) True XLOC_013867
TCONS_00027713 mRNA upstream 267133 8144556 ~ 8339860 (+) False XLOC_013864
TCONS_00027714 mRNA upstream 270257 8144573 ~ 8336736 (+) True XLOC_013864
TCONS_00027711 mRNA upstream 649123 7954679 ~ 7957870 (+) True XLOC_013861
TCONS_00027709 mRNA upstream 656040 7938211 ~ 7950953 (+) False XLOC_013860
TCONS_00027720 mRNA downstream 5112 8612839 ~ 8647894 (+) True XLOC_013869
TCONS_00027721 mRNA downstream 365315 8973042 ~ 8980038 (+) True XLOC_013873
TCONS_00027723 mRNA downstream 377503 8985230 ~ 9001483 (+) True XLOC_013874
TCONS_00027724 mRNA downstream 396529 9004256 ~ 9017648 (+) False XLOC_013875
TCONS_00027725 mRNA downstream 396550 9004277 ~ 9017910 (+) True XLOC_013875
TCONS_00027715 other upstream 307883 8298994 ~ 8299110 (+) True XLOC_013865
TCONS_00027663 other upstream 1122662 7484217 ~ 7484331 (+) True XLOC_013841
TCONS_00027658 other upstream 1300430 7306467 ~ 7306563 (+) True XLOC_013837
TCONS_00027653 other upstream 1427328 7174703 ~ 7179665 (+) True XLOC_013831
TCONS_00027648 other upstream 1451294 7154501 ~ 7155699 (+) False XLOC_013830
TCONS_00027731 other downstream 484144 9091871 ~ 9096360 (+) False XLOC_013877
TCONS_00027739 other downstream 542367 9150094 ~ 9169225 (+) False XLOC_013879
TCONS_00027757 other downstream 822130 9429857 ~ 9429944 (+) True XLOC_013888
TCONS_00027758 other downstream 836045 9443772 ~ 9443878 (+) True XLOC_013889
TCONS_00027788 other downstream 1959644 10567371 ~ 10567486 (+) True XLOC_013906

Expression Profile

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