RNA id: LOC110501593


Basic Information

Item Value
RNA id LOC110501593
length 2114
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110501593
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43597314 ~ 43599427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCTCCCTTTCAGGCTCTCCTAAATGCTGCAATCCCAGATCACGAAGCTGATGCATTCACTCCATGCGCAGAGGAGGAGCCTCTGCTTCTGGACCCTGCAGTGCAATGGTTTCTAGGGGGCCTTTCCCACTGGGATGCAGAGCATTTCCTCTTCATTGCTGAGAGGGGCTACCTGTGTGAGCACAACTATGCCTCCTTCCCCCTGTTCCCTGTAATACTGTGGGGGCTGCCCCTCAGTGGCTGTCTTACACTGCGTGGACGCCTGCTACTGGCTGTTGCCTTGGGTAACAGCGCCCTCTTCCTGCTGAGTGTGATAGCACTCTATGGACTCGGCCGTGTGGTACTGCAGGACTGCCGTCTTGCTCTAGTCTCCAGTTTGCTCTACTGTCTCACCCCTGCCAATGTCTTCATGATGGATGGTTACTAAGAGAGCCTGTTTGCTGCACTGACCTTTGGGGGGCCTCTTTCTCCTAGAGAGGATACACCCTCCGAGCCTGCCTGGCTCTGAGTATAGCCACTGCTGCACGAGCCAATGGACTTGTGAATGTAGGATTCTTGCTGTATCTGCCCCTGCAACAGGTGCTCTACAAGTACTGGGGACTGCGTAAGGACAATAAGGATACAACAAATGCCTACACTACACCTGGATCATCGCTCGTCTCCTGTTCACGGCTGCATTGGGCACAGCAGTTATTGCCCTCCCCTTCTTGGTCTTCCAGTAGTATGGGTACAGGGCGTTCTGTACACCCTCCCTCTCCTTGGAGCAGATTTCCCCTGCCCTCATCCAGCTTGCTGAGGATAAAGGCTACAGGGTCCCTGGCGAAAACGCACCCCCACCCCTCTGGTGCCTGCGACCCCTCCCCCTGCTCTACTCTCATATCCAGGATGTGTATTGGGATGTGGGCTTCCTGCTCTACTTCCAGCTTAAGGAGATACCCAACTTCCTGCTGGCGCTGCCCATGGCAACTCTGGACATGGTGGCAGCCTACATGTACTATAGGGATAACCCAGCCAGGTGTCTGAGACTGGGGCTGTGGGACAGAGGGGCAAACAAACGGCCAGACAAACCCACACCTGGATTTTACAGCCCCAGGGTGTTTTTATATGTGGTGCATGCTACAATGATCCTGGGATTTGGAACATTCTGCATGCATGTGCAGGTAAGGAACGAATCAGTGGAAAATATTTATGTAAGGGGATTTTAACAGGTTACACAAGAATGTCTTCTTGTACTTATCCCAATACCCCATTGTTCATTTACTGTCCTGCTGGAAGACATGCTCTATCCCCACGTGTTGGATTCTAGGGTACTTCATCTCCTATTGGCTTATGGGCCTGTAACTTCTTACAGTGGACTTGACCTGACACTTTCTATTGAAGACCTGATGTGTGCCCAAAATACTATTTGAGGGCAATAATAATAGCTCTGAAGCGTGTCCATATTTTCTGCCCGCTTCATAAATAGACAGTGCCATTTTAGATAGCAATTGGCTACTCACCTCTGTTAGTGTTAGGCAATAAGGTTCAAGCGTTTTATTTGCACTCCATCTCACTTTCAGAAAATTGCCTATTTTAATATTACCCCCCCCCGGATTTGCAATCCAGCATTGATGCACTAATTATTCCATTCACTTGAAAGTTCCATTCTATCAAATTGTATCTGGAAAAAGTACAGGGTGCAGTTTGTGCTTTTGAGTGCAGATGTTAATGACATTTTTTGTTTACTAAAGAGATATTGTGTAATAAAGCATCACAAATAATTTGCGTTTTTTGTTGATAGATTCTGCTTGCAGCATTTCAGCCATTGATTTCAGTACCAGAGACAGCAAGCCTTTCTAGTTGAAACGCCTAGAAAGTGAAAATCAAAAGTAAATGAAGCTAGCTAGCGAGCTTACTGAATTTAATACAGACCACGCATGTCTAGCTACTGTAGTTGACCTTCTGATAAAACTTGCATCATTACTCTAGAACATTACTAGCAAATGACATTGAAACTTGAAAAGGGGAGCAGTGCACATAACTATGGATAGTCTAAAAACAAACGGTCTAAACTCAAAGGAGAGTGTGCAAGGTTTATTTTAGAATGTATTGTTTTGAATTATAATGACCCAA

Function

GO: NA

KEGG:

id description
K07542 PIGV; GPI mannosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167016 lncRNA upstream 166379 43430711 ~ 43430935 (+) True G145513
TU167011 lncRNA upstream 171673 43425437 ~ 43425641 (+) True G145508
TU166996 lncRNA upstream 194369 43402459 ~ 43402945 (+) True G145493
TU166914 lncRNA upstream 237430 43310168 ~ 43359884 (+) True G145420
TU166907 lncRNA upstream 348028 43249037 ~ 43249286 (+) True G145415
TU167607 lncRNA downstream 107342 43706769 ~ 43715909 (+) True G146039
TU167612 lncRNA downstream 119929 43719356 ~ 43719858 (+) True G146042
TU167620 lncRNA downstream 123436 43722863 ~ 43723100 (+) True G146050
TU167613 lncRNA downstream 124411 43723838 ~ 43724222 (+) True G146043
TU167623 lncRNA downstream 130094 43729521 ~ 43729792 (+) True G146053
XM_021563468.2 mRNA upstream 955 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA upstream 955 43570291 ~ 43596359 (+) False LOC110490199
XM_021563477.2 mRNA upstream 955 43570292 ~ 43596359 (+) False LOC110490199
XM_021563459.2 mRNA upstream 955 43570293 ~ 43596359 (+) True LOC110490199
LOC110501584 mRNA upstream 38377 43551582 ~ 43558937 (+) True LOC110501584
XM_021563502.2 mRNA downstream 31038 43630465 ~ 43651752 (+) False LOC110490231
XM_021563510.2 mRNA downstream 31039 43630466 ~ 43651752 (+) False LOC110490231
XM_036949199.1 mRNA downstream 31039 43630466 ~ 43651752 (+) False LOC110490231
XM_036949207.1 mRNA downstream 31039 43630466 ~ 43651752 (+) False LOC110490231
XM_036949214.1 mRNA downstream 31043 43630470 ~ 43651752 (+) False LOC110490231
TU166008 other upstream 1031284 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1627997 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1628092 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2055723 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5545570 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 131445 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 169280 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 199977 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 287169 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 397353 43996780 ~ 43997065 (+) True G146226

Expression Profile