RNA id: XM_021563534.2


Basic Information

Item Value
RNA id XM_021563534.2
length 2553
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110490231
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43630465 ~ 43651752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCCATTTACATTTGGGTTCTCTCCAAAGTCCTCTGAAACAGTCTGCATAGCCCACTGTATTAAAGTACGTTTTGAAGTTATTCAATATTTTTCATGTAAAGACGATATTAGTGTCAAACCCATAGCAACGTCTATATTTAGCTGTTGCCATGTGTCTCATGGGCATTTTGACCTGTTGGTCAGACGATCCGACAACTGTCCTTCTGCCTGTAACTTGAGGACACGCCCCTTCGCCGAATGGCATGGATCGCGCCATAACGTAAAGTTATATCTATGTAGGATGAACATTTACATTTCGTATTTTTTATTATACAGCATTTTACATACTATATATTATTGTACGTTTAATCCATGCATAAACTATGACGCGAGAAGAGGAGTTAATTCGGATTGCAAAAAAGCTGGACAAGATGGTGTCTAGAAATAACACGGAGGGTGCCCTGGACCTGCTGAATGAACTGAAGAGCTTCAACATGACACTGAAACTTCTGCAGGAAACGAGAATCGGCATGTCTGTGAATGGAATCAGGAAGCACTGCACAGACGATGAGGTAGTTTCCCTGGCCAAGATCCTCATCAAGGACTGGAAGAGACTGCTGGATGCTGCACGTACTCAGAGTACTGAGAGGCCCAATAAGATGAAGAATGGGGTTGACTCCAACAAATCCACAGGGTCCCCAGTCAGGTCCCCCTTAGAGAAAGACACCAGTCACAAGAGGCTGGATGTTTCTGATTCAGAACCTGAATCTGAAAAGGAAGAATACTCTGACAAACGGCAAAAAGAGAAGTACAATGTTGAACACAAAAAAGACGAGAGAGCTGTTGACCTTAAAAAGGAGCGATATACAGAGGCATTCAAAAACAAACGGCATGCAGAACAATCCAAAAATGGAAAACATACAGAAGATGCCAGAAAAGAAAGACATGTAGAACACTTAGAAGAACCCAAAAAAGAGAGACACTtcgaaaaatccagaaaagaaaGACATGTACCTATACATGACACAAAAAATGAAAGACATGTGCAAGAACCCAAGAAAGAAAGTAACCTCGAAGGGCCCAAAAATGAGAGCCACACCGATGAACCGAGAAAGGAAAGACACACAGAGGAACGCAGAAAGGAGATACCAATGTACGAACCCCCACAAGAGAGACCTGTTGAAAACCACAGACAAGGGTTTGAGAGGAGAAGCGTCTTGGATGATCTTTACCCCTCTTGTTACTCTCCTCCTCGCCCCCCCCGACCACCCCGTCTTCCTCCCCCTGTCAGACGTATGTCTGGGGAGGTGAATAAAGGGGTGAAAAAAGAggtgaagaaggagagagagagGAGAGATTCTTCAGACACTCTGTCTCCTTCTCATCCTCGTCCCACCCCTCCGTCCAGACGTCCTTCAGTGAAGGTGAAGAAAGAGAGAAAGGACTCCACTGACTCCAAGCCCAGCCATTCTGTGAAACGTCATTCGACTGATTCCAAATCAGACAGGAGGGACTCTGTGGATTCCAAGACTAGCAACTCACCCTCGGCTAAGAAGCTCTCTAGCGAGACgAAAGAATTTCATAGCTCCAAGTCCTCTCACCCTGGCCTTCTGCAGAGAAAGTCCTCAACGGACAGTATTGAACGGAGAGGGAAACCAGAGATGCCAAAGATTCCCACCACCCCCACCAGTCCCATGTCCCCCTCCTTCAGCTCAGCAGGGGTTCCCCTGTCCCCTTGCCTTGCCACTGGAGAAACCATCAGGGACAAGTGCATCGAGATGCTGGCTGCTGCTCTACGTACAGATGACAACTTCAAAGAATTTGGGACAAACTGTGACTCCATGGCAGCAGAGATTGAAGATCATATTTATACGGAGATGGGATCCACAGATATGAAGTATAAAAACAGGGTGAGGAGCCGCATCAGCAACCTGAAGGACCCCAAAAACCCTGGACTGCGGAGGAACGTCCTGGCTGGAGGCATCGAGCTGAGACGCTTCGCCATCATGTCTGCTGAGGAGATGGCTAGTGATGAGCTGAAGCAGCTGAGGAACAATCTGACTAAGGAGGCCATTAGGGAACACCAACTGTCCAAAACCAGCGGTACCATTTCTGACCTGTTTCAGTGCAGCAAGTGCGGCAAAAAGAACTGCACCTACAACCAGATGCAGACCCGCAGCGCTGATGAGCCTATGACTACTTTTGTTCTGTGTAACGAGTGCGGGAACCGCTGGAAGTTCTGCTGATGTGGCCCAGCTCCAATGACGATGTTGCAGACCACATTTTTCTATGAGGGGTTATAATGTTTAGCAATGAGTAATTTTACAAAAATGAATACCGGTACTTCCGATTTATAATTGACTTTTTAAGatggactcccgagtggcgcagcggtctaaggcactgaatctcattgcaagaggcgtcactacagttactggttcaattccaggctgtatcacatccggctgtgattgggagtcccatagggcggtgcacaattggcccagcatcgtccgggttgtaaataagaatttgttcttaattgacttgcctggttaaataaagttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167016 lncRNA upstream 199539 43430711 ~ 43430935 (+) True G145513
TU167011 lncRNA upstream 204833 43425437 ~ 43425641 (+) True G145508
TU166996 lncRNA upstream 227529 43402459 ~ 43402945 (+) True G145493
TU166914 lncRNA upstream 270590 43310168 ~ 43359884 (+) True G145420
TU166907 lncRNA upstream 381188 43249037 ~ 43249286 (+) True G145415
TU167607 lncRNA downstream 55017 43706769 ~ 43715909 (+) True G146039
TU167612 lncRNA downstream 67604 43719356 ~ 43719858 (+) True G146042
TU167620 lncRNA downstream 71111 43722863 ~ 43723100 (+) True G146050
TU167613 lncRNA downstream 72086 43723838 ~ 43724222 (+) True G146043
TU167623 lncRNA downstream 77769 43729521 ~ 43729792 (+) True G146053
LOC110501593 mRNA upstream 31047 43597314 ~ 43599427 (+) True LOC110501593
XM_021563468.2 mRNA upstream 34115 43570290 ~ 43596359 (+) False LOC110490199
XM_021563634.2 mRNA downstream 295336 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 296182 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 303297 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 813222 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 813471 44465223 ~ 44472924 (+) False LOC110490388
TU166008 other upstream 1064444 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1661157 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1661252 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2088883 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5578730 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 79120 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 116955 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 147652 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 234844 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 345028 43996780 ~ 43997065 (+) True G146226

Expression Profile