RNA id: XM_021563634.2



Basic Information


Item Value
RNA id XM_021563634.2
length 1178
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110490316
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43947088 ~ 43950347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctgttttcatgctaTCAATAGCGTTAGTGACTATCTGTGCTGCTAGCAACATttgatttcattttttttgcaaaCCTTTATTGACACCTGTCATATTCAACGGTGCtgcgcgttcgtaaattcatcagttattctgctctcTGGCACACTCAAACGAGAGAGTTTTGACATCGGCGTAGATAGACAACATTAATTTACGAATGCACCCTAAATCGACATTATTGATTGGACGATTAGGACCAATGGGAGTAGAGAACGAGATGTGACCAGTTGACTTTTGTGCTTCGTTCCTTTTTGTTGCGCTTTTGGTGCTGATGCAGGCAGTGAAGAAGGCGCGACCACACCACTTTGTAAGCATTTGAAGGCATAGCAACCCTCAGTACTCTGCTGAAATGGCATCCTCTGGAGAGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccgaaggagaagaaggagatgTCCCTGGAGGAGATTCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAGGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGCAAGACGGCAGAGGAGAAGCTCAATCAGAAAATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCACTCAATGAGAAATTCAAGGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCAAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTATTttgtaataatttaaaaaaaacttgtgcAAAGATATCTTTTTGTTCTGTTCAATGACAGTATTATATTTGTCATTGTTATAGTTTTATTCACCTTGTTTGGATTAGTTAGGCTGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCACACCTCCGGTAGATTTGTGTATTGCAGTTTATGACCTTTGAAATAAGCAGCGTTTTTACCTATAAGGAAGCATGCCACTGTTACGCATAGGTCCTTATCATTGTGAATTGCATAATATAAGTAAATCCTTGTACCTTGTAAAACTGTGTTTATCTGATCTTAATAAAGTTGCAATTGTTCTTTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167759 lncRNA upstream 29310 43896918 ~ 43917778 (+) True G146171
TU167753 lncRNA upstream 49848 43893336 ~ 43897240 (+) True G146168
TU167746 lncRNA upstream 58308 43887291 ~ 43888780 (+) True G146165
TU167704 lncRNA upstream 113350 43833516 ~ 43833738 (+) True G146130
TU167687 lncRNA upstream 148270 43798567 ~ 43798818 (+) True G146113
TU167790 lncRNA downstream 14222 43964569 ~ 43965697 (+) True G146201
TU167810 lncRNA downstream 38805 43989152 ~ 43989351 (+) True G146221
TU167828 lncRNA downstream 63685 44014032 ~ 44014243 (+) True G146238
TU167835 lncRNA downstream 70644 44020991 ~ 44021229 (+) True G146245
TU168267 lncRNA downstream 248310 44198657 ~ 44203445 (+) True G146645
XM_021563502.2 mRNA upstream 295336 43630465 ~ 43651752 (+) False LOC110490231
XM_021563510.2 mRNA upstream 295336 43630466 ~ 43651752 (+) False LOC110490231
XM_036949199.1 mRNA upstream 295336 43630466 ~ 43651752 (+) False LOC110490231
XM_036949207.1 mRNA upstream 295336 43630466 ~ 43651752 (+) False LOC110490231
XM_036949214.1 mRNA upstream 295336 43630470 ~ 43651752 (+) False LOC110490231
XM_021563656.2 mRNA downstream 4702 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 514627 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 514876 44465223 ~ 44472924 (+) False LOC110490388
XM_021563811.2 mRNA downstream 514876 44465223 ~ 44472924 (+) False LOC110490388
XM_021563795.2 mRNA downstream 514878 44465225 ~ 44472924 (+) False LOC110490388
TU167748 other upstream 57479 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 147235 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 177926 43768707 ~ 43769162 (+) True G146091
TU167624 other upstream 215870 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1381058 42510330 ~ 42566030 (+) True G144661
TU167816 other downstream 46433 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 478806 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 920453 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 1521735 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 1522398 45472745 ~ 45492379 (+) True G148191

Expression Profile