RNA id: XM_021563780.2


Basic Information

Item Value
RNA id XM_021563780.2
length 1381
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110490388
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44464974 ~ 44472924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttctcaaaaacacattggatgagaaagccagaggtcccgcgCTTCGGACCCTCTCCTCCAATAGGTTTTTGAGAAGGAGGCAAAGATAGATGACGTCTGCAATTGAGATCCTCCCCATGTCGTGTTAGCAGGTATCTAGCTGGCTATTAAGTTTCACGGTCCTTACGACGACAGTGCAGACCCAGAGAGAGGCCCCACCGTCTGGCAGATTATGACCCAGTGCCACCCACTGTCCAACCACTCCAACTTCTTCACCGTGAAAGCCGAGGCCTCCTCAACACTACCTCTCGCCACCAGCATGGCCAATTGCAACACCGCCGCCGTTCCAGGGAAGGTGATGGGCACACCTGGCCCTGCCGGCAGAATCAGCCCAGAAGGAAGTCAGGTGTTGAGTAAAAAGAAGCTGCAGGACCTCGTAAGAGAGATTGACCCCAATGAGCAGCTCGATGAGGATGTGGAGGAGATGCTGCTACAGATTGCAGATGACTTCATTGACAGTGTGGTGACGGCTGCCTGTCAGCTGGCCCGCCATCGCAAATCCAACACCTTAGAAGTGAAGGACGTCCAGCTACACCTGGAGCGCCAATGGAACATGTGGATTCCTGGCTATGGTTCAGATGAGATTCGGCCGTATAAGAAGGCTTGTACCACAGAGGCCCACAAACAGGTTTTGTGTGTGATTTGTCAGCTCCATCATCACACAAGTATTTTGATCTTCAGTCCGTTTTAATGCTTTTCACCACAGACTGGCCAAAATCACACATTCCTCATTCAGTGTAAATGTACACTCTGGTATGGAGTGTTGTTTTGGGACAGTGTTTTGTTTTTGGAATTATCTGTTCAACTTTACTTTTTTGTTAAGGGGGTAACCACCAAACACGCACATCTTCAATATGGTGGTGTCTTCCATACTCTTTCCCAAatttttttaaaaaaactttttttttattttattttattttgtctggCATGTGTTTGCTGTTGTGTGTTTAGTTTTTGTCACACAAACAAACCCCCTTCATCTAACATCAGAAATATACACCATTTGCATTTAGTTGGTTTCCAGGATACTGTCATGGCACAATGTTTTTGTGTGGTGTAGGGATCTGATGTCATCTCCACAGTTCATTAGAAATGTACCCAGGACATTGTTTTTCATAAGATGTCAACAATTAACAACAAATGACTGACTATTATTCAAAAAATAATAAGTATGTGAAGTATGTCTTGTGTCGCCAGACTGCAGTGAGATGTGGTTAGGTAATGGTCCTTATTTGGGGATGTGTGGGGAAGCTGTAACATTTGTTTTACTTTATATTGGCAGTGTTTTAGTTAAACCTGTTATTTTTATTCCATAAATAAGATTCATATTTCACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168480 lncRNA upstream 23036 44441870 ~ 44442187 (+) True G146850
TU168478 lncRNA upstream 29497 44435086 ~ 44435726 (+) True G146848
TU168475 lncRNA upstream 32322 44432693 ~ 44432901 (+) True G146845
TU168473 lncRNA upstream 34078 44430885 ~ 44431145 (+) True G146843
TU168299 lncRNA upstream 247157 44217617 ~ 44218066 (+) True G146676
TU169019 lncRNA downstream 134749 44607673 ~ 44608027 (+) True G147346
TU169020 lncRNA downstream 136784 44609708 ~ 44612919 (+) True G147347
TU169022 lncRNA downstream 138298 44611222 ~ 44611884 (+) True G147348
TU169025 lncRNA downstream 142138 44615062 ~ 44617145 (+) True G147349
TU169035 lncRNA downstream 155195 44628119 ~ 44628374 (+) True G147353
XM_021563656.2 mRNA upstream 504231 43955049 ~ 43960992 (+) True LOC110490326
XM_021563634.2 mRNA upstream 514876 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA upstream 514876 43947934 ~ 43950347 (+) True LOC110490316
XM_021563569.2 mRNA upstream 813471 43630498 ~ 43651752 (+) False LOC110490231
XM_021563838.2 mRNA downstream 78239 44551163 ~ 44553979 (+) False LOC110490437
XM_021563829.2 mRNA downstream 78240 44551164 ~ 44553979 (+) True LOC110490437
XM_021563975.2 mRNA downstream 730385 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA downstream 730396 45203320 ~ 45255843 (+) True LOC110490546
XM_021564034.2 mRNA downstream 971149 45444073 ~ 45468845 (+) True tsg101a
TU168471 other upstream 35830 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 468158 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 575614 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 665370 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 696061 43768707 ~ 43769162 (+) True G146091
TU169210 other downstream 397876 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 999158 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 999821 45472745 ~ 45492379 (+) True G148191
TU172245 other downstream 2508795 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 3025024 47497948 ~ 47547579 (+) True G150997

Expression Profile