Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021563803.2 |
| length | 1391 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | LOC110490388 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 44464974 ~ 44472924 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0005669 | transcription factor TFIID complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K03126 | TAF12; transcription initiation factor TFIID subunit 12 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU168480 | lncRNA | upstream | 23687 | 44441870 ~ 44442187 (+) | True | G146850 |
| TU168478 | lncRNA | upstream | 30148 | 44435086 ~ 44435726 (+) | True | G146848 |
| TU168475 | lncRNA | upstream | 32973 | 44432693 ~ 44432901 (+) | True | G146845 |
| TU168473 | lncRNA | upstream | 34729 | 44430885 ~ 44431145 (+) | True | G146843 |
| TU168299 | lncRNA | upstream | 247808 | 44217617 ~ 44218066 (+) | True | G146676 |
| TU169019 | lncRNA | downstream | 134749 | 44607673 ~ 44608027 (+) | True | G147346 |
| TU169020 | lncRNA | downstream | 136784 | 44609708 ~ 44612919 (+) | True | G147347 |
| TU169022 | lncRNA | downstream | 138298 | 44611222 ~ 44611884 (+) | True | G147348 |
| TU169025 | lncRNA | downstream | 142138 | 44615062 ~ 44617145 (+) | True | G147349 |
| TU169035 | lncRNA | downstream | 155195 | 44628119 ~ 44628374 (+) | True | G147353 |
| XM_021563656.2 | mRNA | upstream | 504882 | 43955049 ~ 43960992 (+) | True | LOC110490326 |
| XM_021563634.2 | mRNA | upstream | 515527 | 43947088 ~ 43950347 (+) | False | LOC110490316 |
| XM_021563644.2 | mRNA | upstream | 515527 | 43947934 ~ 43950347 (+) | True | LOC110490316 |
| XM_021563569.2 | mRNA | upstream | 814122 | 43630498 ~ 43651752 (+) | False | LOC110490231 |
| XM_021563838.2 | mRNA | downstream | 78239 | 44551163 ~ 44553979 (+) | False | LOC110490437 |
| XM_021563829.2 | mRNA | downstream | 78240 | 44551164 ~ 44553979 (+) | True | LOC110490437 |
| XM_021563975.2 | mRNA | downstream | 730385 | 45203309 ~ 45255843 (+) | False | LOC110490546 |
| XM_036949670.1 | mRNA | downstream | 730396 | 45203320 ~ 45255843 (+) | True | LOC110490546 |
| XM_021564034.2 | mRNA | downstream | 971149 | 45444073 ~ 45468845 (+) | True | tsg101a |
| TU168471 | other | upstream | 36481 | 44429153 ~ 44429393 (+) | True | G146841 |
| TU167816 | other | upstream | 468809 | 43996780 ~ 43997065 (+) | True | G146226 |
| TU167748 | other | upstream | 576265 | 43886596 ~ 43889609 (+) | False | G146165 |
| TU167688 | other | upstream | 666021 | 43799404 ~ 43799853 (+) | True | G146114 |
| TU167665 | other | upstream | 696712 | 43768707 ~ 43769162 (+) | True | G146091 |
| TU169210 | other | downstream | 397876 | 44870800 ~ 44871500 (+) | True | G147510 |
| TU169947 | other | downstream | 999158 | 45472082 ~ 45472629 (+) | False | G148191 |
| TU169948 | other | downstream | 999821 | 45472745 ~ 45492379 (+) | True | G148191 |
| TU172245 | other | downstream | 2508795 | 46981719 ~ 46985226 (+) | True | uevld |
| TU172952 | other | downstream | 3025024 | 47497948 ~ 47547579 (+) | True | G150997 |
