RNA id: XM_021563838.2


Basic Information

Item Value
RNA id XM_021563838.2
length 1870
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110490437
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44551163 ~ 44553979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCCACCTCCCCTTGAGTTAAAAAAAATTGTATGTATAATCCCTGAGTTGACCCAGAAAATAAGCAGTATGTGCATCGGCCCTGCTTGAGCATGAAGCGTAACCCTGTGGAATACATACTGTAATCTGAAGACACCTCGCTTTGCAAAACTAAAATAAAAACGTAGCAGTAGCAAAATCGCTGAACTTTAATCCGAGTAGATACGGGAGCCATGGCAGATCATCTAATAATGCCCATGAACCACAGCTCTGCAGGCGGGGGCCTCCACAGCTACAGACTAGGCATGAACGGAGGCCTGCAGGCAGGCCACCAGCAGCACGTAGTGCCTCAGCCCGGCCTCCGAGCCCTGCCCAATGGCCAGATGATGCACTACGGTGGGGGACCTCAGCAGCAGGCCACCATGGAGGTGGCCATGAGGCAGCGGCAAGGCATGGTGGGGCCCGTGAACAGACAGCCCAACGGGGCTCAGATGGGCCACCACCAGATAACGTCTGGTAACACGATGTACAACAAAGGGCAGGCCCAGCAGCAACAccacacccagcaccaacacatgaGCCTCCAGCAGCACCCGCAGCAACAACAGCAGTATATGAATGGTGGTCTCACGTCCCAGCAGCTCATGGCCAGCATGCATCTGCAAAAACTCAACACCCAGTATCACGGACATCCACTGGGGCCCATGAACAGCAACCACATGGGCAACGGGGCAGCCCAGTACCGCATTTGCCCGGCCCAGCTGGCTAACATGCAGCAGATGGCCGGGCCGGCTCTGGCCTTGAATGGCATGGATGCGGACATGATTGACGAGGAGGTTTTGACATCCCTGGTTGTGGAGCTGGGCCTGGACCGCATTCAGGAGCTGCCCGAACTCTTCCTGGGCCAGAACGAATTTGACTTCATCTCAGACTTTGTGAGCAAACAGCTGCCCAGCACCATCAGCTGCTGAGTGAGAGAGGACCTGAGTCAACGATGCTGTGAAGGGGCCTGGAAGGGTGGAGAGTTTGGAAAGACTTGAGTAGAGTGTTGCCCACTGGAAACAACTACTGCTCCGCTTTTCGTTTTTGTGTTGTTCCTTTCACTCTAACAGTGCTAGGTCGCAGAGAAGAGTGAGCGAGAGACACTGGTCTGGATAGCCACAGTGCTATGGTGTCATTTGTGAAGTGACCAGAGGTATGGTTCTGTGTTGGGTCGCAGCTCGCCTGTAATGGGACATCGTCCTCCAGCATCTCTTCTCTCCAGAGATGAATGTAAACAAAACTGCAGAATTTGTTCAGAGTGGCTTCTCAATGTTACGACACTGTTGCCTCCTACATTGGACTCAATGGCAGTTTAGtagtaaaatgtatttatttattactcTCAGAGAAATTAAAATAGAACAAACCAGAGACCGACAGAATCAAGTTATTTTGGTGTTTTGGATAAGGTCAGGGGAAGCTCGtagtttgtattttttaaatattgtttttatttttagttAATTGGTCTGGGCCTTCTGTTTTGAAAATAAGCCCCTCAGattaattttttattttccaAGAGCTTGGATTTCTCTCCAAGAATGGAGATGGCAGTACAAGTAGAATGCCATTTCATGGATTTGAATGGAAGTCTATCATCATTGAATAACTCACTTTTGGCAAGGATTGCTTTTAGCTGTGATGTTCTCAAACCTACTCCTTGTACTGTATAAAGCTGTGTTAATACAGGAAAGTCTATGTAAGATATAGAACTACATTAATTATGCGAATTTATTATTTTCTTTACTGGTGGTTTTTATCTTCCCTTTGCGGTCAAGACGGGGTTTTGAGGATCAATAAAGATGGCCCGGATATAAGTGTGGCCTGCTTTTACATTCATTGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168480 lncRNA upstream 108976 44441870 ~ 44442187 (+) True G146850
TU168478 lncRNA upstream 115437 44435086 ~ 44435726 (+) True G146848
TU168475 lncRNA upstream 118262 44432693 ~ 44432901 (+) True G146845
TU168473 lncRNA upstream 120018 44430885 ~ 44431145 (+) True G146843
TU168299 lncRNA upstream 333097 44217617 ~ 44218066 (+) True G146676
TU169019 lncRNA downstream 53694 44607673 ~ 44608027 (+) True G147346
TU169020 lncRNA downstream 55729 44609708 ~ 44612919 (+) True G147347
TU169022 lncRNA downstream 57243 44611222 ~ 44611884 (+) True G147348
TU169025 lncRNA downstream 61083 44615062 ~ 44617145 (+) True G147349
TU169035 lncRNA downstream 74140 44628119 ~ 44628374 (+) True G147353
XM_021563788.2 mRNA upstream 78239 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA upstream 78239 44465223 ~ 44472924 (+) False LOC110490388
XM_021563811.2 mRNA upstream 78239 44465223 ~ 44472924 (+) False LOC110490388
XM_021563795.2 mRNA upstream 78239 44465225 ~ 44472924 (+) False LOC110490388
XM_021563818.2 mRNA upstream 78239 44465232 ~ 44472924 (+) False LOC110490388
XM_021563975.2 mRNA downstream 649330 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA downstream 649341 45203320 ~ 45255843 (+) True LOC110490546
XM_021564034.2 mRNA downstream 890094 45444073 ~ 45468845 (+) True tsg101a
XM_036949734.1 mRNA downstream 1042024 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA downstream 1145218 45699197 ~ 45755983 (+) True LOC118940395
TU168471 other upstream 121770 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 554098 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 661554 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 751310 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 782001 43768707 ~ 43769162 (+) True G146091
TU169210 other downstream 316821 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 918103 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 918766 45472745 ~ 45492379 (+) True G148191
TU172245 other downstream 2427740 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 2943969 47497948 ~ 47547579 (+) True G150997

Expression Profile