RNA id: XR_005036924.1


Basic Information

Item Value
RNA id XR_005036924.1
length 3737
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110490449
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44571948 ~ 44606865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gataCAAATTTAAAGAAGAAAAAACATGGCGGACAGCCACTAGCTCAATCCACATAAAACAATACACAAACATTTCAAAGCAAGGTAAACAGACTAATATATTGTTTACACGCTATACTCTTTTTAACAAACACATGTTTTAGCTGGTAATTTAGCTAGCATTTATTGATGATGATGTATTTATAATCAGGCCAACGATAGATGGCGAAAATTAAGTCTTCCCGTTAGCGTGCTGTGTTGACGGAGCTAGCTATCTGTTGTTCGAGCATGCCCATGTTATTAGCTTGGAGgaaaaaggagggagcTGGTCGACTTCCCCTTGACGCAACGAAAAAGGCGCACTTCTATTGAGAGAACCAACTGAATACACTTTTGAAGACTGTTATGATCTTAAGTGAGCCCTGAGTGTGTTTGGGTGGGTGCCCGAGGTCTGCTGACAGCTGGGGCCACATCTTTGTTGTACCCTGTCGTCTGCCTCCAACGCCAACCCCCTGCCTGGCCGACAGAAGTGGAGAGCGTTAAGCGCAATCCGTGGGGAAGTCAACCTGAGCATCCACAAATGAAAGAGTGGACTATTGTGTCTTGAACTTAGTATTACTGGAGCATGAAGAAACCAGTGCCACAAAAAGCTATTGAGTGGAGAGATGGCAGGCGGATCAAGCATGCCCGAAGTGGCCGTCCATCCCGGGTCCCATCGCAGTACCAAGGAGGGCACTTCAGTTGGGACAAATACCTAAAGGAAACAGGTGCTAGTGCTGCACCTGCCCACTGCTTCAGACAGGGTGCAACACCTCCAGTGAATGAGTTCAAGGCGGGCATGAAGCTGGAGGCGCAGGACCCTCGGAATACAACGTCAACCTGCATTGCAACAGTGGTGGGCCTGACGGGATCGCGGCTGCGTCTGCGCCTTGACGGCTCCGACAACAAGAACGACTTCTGGCGCCTGGTGGACTCGTCTGAAATCCAGCCTATCGGCAACTGCGAGAAGAACACGGGCATGCTGCAGCCGCCAttggGCTTCCGTCTGAACGCATCCTCCTGGCCCATGTTCCTTCTAAAAACACTAAACGGAGCCGAAATGGCCCCAGCACGCATCTTTCACAAGCAGGAGCCCCCGGTCCCAGAGCAGAACTCCTTCCAGGTGGGCATGAAGCTGGAGGCAGTGGACCGCAAGAACCCCCACTTCATCTGCCCGGCCACGGTGGGGGCGCTGCGTGGCGTGGAGGTGCTCGTCACCTTCGACGGCTGGCGGGGTGCTTTCGACTACTACTGCCGCTACGACTCCCGGGACATCTTCCCTGTGGGCTGGTGCTCTCTCACCGGGGACAACCTGCAGCCGCCTGGCACTAAAgCAGTGCTACCCAAGACCCTCGGTTGCCTTTCAGACGGTAGCGAGGGAACAGCCATGCCAGGACAGCTGCCTGGCCAACGGGGACGCAAGCCAGGCTGCAGGAAAGCCAAGCTGACAGGGCCCTGGGGGCAGAAGGGGGCCGGAGTAGGACCACAGGCCCCCCCGCCCGGAAAGGGACTGGAGCCTatcaaggtccccaagaaaagaGGCCCCAAACCGGGGAGTAAGTTGGGCTGGGCAAAGAGAGAAGGCTGGCTGGAAGGTGCCATGGCAGGCCCAGGGCGACCCGTGTCCCGGCCCAGAGGGAGGCTGCCAGCCAACTGGGCCCAGAGGATGGCACTGCAGGAGGGACAAGTGGAGTCTATCAAGATCCCCAAAAAGAGAGGGCCCAAGCCCGGCAGCAagAGAAAACAGCGGGTGGTGCCCAACCCCGTGCCCGTTTCCCCCAACAGCAGTATGCCAGAGCCAGACACCAGCACGGTGCCTCTGGACAACGCCACCATCCCCAGCGCCGCCTTGCATGCtgccacagTGTGTGTCTACCTGAACAAGTATGGGAAGGTGGGACCCCACTTGGACGGGCGGCGGGTGCAGCAGCTGCCCGACCACGTTGGTCCAGGCCGGGCTTCCTCGGTGCTACAGCAGTGTGTCCAGGCCTGTGTGGACTGTGCCCACAACCAGAGCTCTGTCTTCTCCTGCCTCAAGCCAGGTCACGGAGGAGAGGTCATATCAGCCCACTTCGACCACCAGCACCATACCCTCACCCTACCCACGGTCAACAGCGTCACGCACGTCCTGCACTTCCTGGAGAAACTCTGTCACAACCTCTACTGTGACCCTCTGTTTGGGAGCCAGCCCATCCCTAGAGGGGGCCTGCATTACGACAGCCATGCCTACCCAgAAAGGAGAAGTTTTAGGGAGGGCCTCATGACGGGTCCAGGAAGAAGCTCCAATCGGTTCCTTCAAGAATCCTACTACAGCCCCCTCCCCCACAAGCTGGCCAAAAACCTCTGCCTCTCCTCGGAAGATTTAGAATGTCTCAATATCAAATGGGCAGGGGGAAAAGTACATGTCATCTGTATGCACTCGAATGGAGGCCGTGCACTTTCCCGCCAATACGTTTTTGATGCCTGcccctctgCACGCTCTAGAAAGGAATAAAGGAGAGACgggaggagatggaaacgcatgGTGGTGAGGTAGTATGTATAGCGAAAGGTAATATCACCCAATTTAGTTATGAAAATATAAAAATTCCCTATTAACTGGataatcaaatacaaattcactctAATTATAGGCTTATCTGTAAACAGCCCTGCACAACCCTCAGTATCGCCTAGGGCTATATATTCTCTCCCAGACTCGTTGATAGACATTTTGGAGCGTccataaggtaaccagtccatccagtatgcataataatacagtccacactcaaaggcgATTACTCACATTTgtataggctagaccaattatgtaccaaagacatcttaaatcagttttgttttatgtttttttgccATGTGTAACATGTGGTAGGCTATGTATTGTGTAACGGCACAATCATAATTTTAATTCAGGTATTTTTCGGGCTTGGGCTCATAAACGAATGCATATGTATAAGCTCTAAAATGCGTATTggtgttttgaatgaatcatcaccttagaagCGCTATCCATTTTGTtatgttaggctttgaaacaacatccacaacaacaacgttttacactcagtttcaacctgctgttgaacttctttcttcaaattgatcatcacagtgaggtgagttttattAAAAGCATAATACTGTTTTTATAgcaagtgtttgatgtgattttcgatATCATTTGCAtttatgtcagagtggttagagggacactagggccctgagtaccaggccattaggacatAAGAGATTACCAAGACTCAACAGTCGCAtggaattttactgcggtcaGACCTCAAGACTGCCGGTAtagcggtaatacggtcaccgcaacagccctgaGTGTAGCCAGTAATGTCCCACTAAGCAAACTTTTTGACTACAGTTAAACTACAGGCTACAGGTGTGCCACTTGGGCCTTGTCATTGACTCTCCTCCATGTTGTTCCAGGTGAGCCTTTCCTCATGGAGAATGGTGTAGGGGGGTCGGAGCACTTAAAGAAGAGCCCCCTGTCCCCGGGCTCGACAGGGCAGCCTCTGGGCCTGCGGTTCCCCACCAAGTTGCTACATCTTAACTCTTCAGGCTCTGAGCGTTTCAGAGAGTGCCCCCGGCCCAGTGGCCAGGACCCCAACCTGTGGACGGTAGAGGACGTCATGCAGTTCATCAGAGACATAGACCCTCTACTGGCCCCCCACGCAGATCTCTTCAGAAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168942 lncRNA downstream 58114 44517962 ~ 44518789 (-) True G147291
TU168915 lncRNA downstream 94192 44482458 ~ 44482711 (-) True G147267
TU168914 lncRNA downstream 95949 44480597 ~ 44480954 (-) True G147266
TU168870 lncRNA downstream 109465 44466235 ~ 44467438 (-) True G147224
TU168735 lncRNA downstream 360419 44215687 ~ 44216484 (-) True G147091
TU169031 lncRNA upstream 2756 44609573 ~ 44612643 (-) False G147352
TU169032 lncRNA upstream 2756 44609573 ~ 44615525 (-) False G147352
TU169030 lncRNA upstream 4393 44611210 ~ 44623234 (-) False G147352
TU169033 lncRNA upstream 4393 44611210 ~ 44611872 (-) False G147352
TU169034 lncRNA upstream 4393 44611210 ~ 44612347 (-) False G147352
XM_036949419.1 mRNA downstream 112454 44436377 ~ 44464449 (-) False LOC110490352
XR_005036931.1 mRNA upstream 123275 44730092 ~ 44737978 (-) True LOC118940389
XM_036949600.1 mRNA upstream 150581 44757398 ~ 45073138 (-) False LOC110501618
XM_036949610.1 mRNA upstream 150581 44757398 ~ 45073138 (-) False LOC110501618
XM_036949615.1 mRNA upstream 154025 44760842 ~ 45073139 (-) False LOC110501618
XM_036949632.1 mRNA upstream 154025 44760842 ~ 45073140 (-) False LOC110501618
TU168885 other downstream 140786 44434790 ~ 44436117 (-) True LOC110490352
TU168015 other downstream 793184 43776063 ~ 43783719 (-) True LOC110490298
TU167341 other downstream 1184774 43372840 ~ 43392129 (-) True LOC110490183
TU167289 other downstream 1304387 43270717 ~ 43272516 (-) True G145767
TU166468 other downstream 1869624 42706818 ~ 42707279 (-) True G145010
TU169520 other upstream 256268 44863085 ~ 44863559 (-) True G147800
TU169728 other upstream 527751 45134568 ~ 45168099 (-) True LOC110490531
TU172175 other upstream 2237363 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 2239335 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 2357917 46964734 ~ 46993665 (-) True G150618

Expression Profile