RNA id: XM_021564096.2


Basic Information

Item Value
RNA id XM_021564096.2
length 3170
RNA type mRNA
GC content 0.52
exon number 6
gene id spty2d1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46966136 ~ 46980755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCTTGCCTGTTTCACGTTGGTCTACGCAATTAAAATAATCTGTGCTACAAAAGCAGCACGAAAATAGACACTTGTCTTTCCTCGTTTTATCTTTTCGTTTTACTTTATTTTCCCTCGCCGTAATTAGTTGTTATCAATTTACTTTAGTGTTTGTAGTTCACGTTTGAAATTGATTAGAACGACGTAATCCCAGTGAGGGTTTACGTGGCTAGCTAGGCTAACAAGTGTGGCTAGCTAAACTAGAAACGCCAGCTGCCTTGTTTAGCAGGTTGAGATAGGTACTTAGTTTTGCTAAATTCAAATTAGCAAGTGAGTCATTTTGTACCGTCGTATTTTATGAAGACATGTAACGCCTGGTTATGGTTGACGTTTCTGGAAacagctagctagtagctaggtAGCCTGTCATACTTTTCATTCTGGATGGGAATATTGAGCTATCCACCCAACCTTAGCTAACCATTCACCACCTGGCAAAAAAATCACCATGGACTTCGAAAATGTCTTGTCGATCGCCTCCCAAAACCAGGGCCTCAGTAGCGTACCGAAGCGGTACAGTTTACAAACTGGACCACCCAAAAAGGACCCTAAAGTGAAAGGTGTCAACTCAGCAGCTGTGCAGGCTTTCCTAAAGAAACAAGAGATAGAGAGTAAAAAGAAAGAGGCCATGAGTATGAAAAAGAAAGAGGGGCTTCTCGCCAAAAGGGTGGAGCTAAAGTCTGACCGCAAGGCTCGAGCGATGGCATCTCGAACCAAGGACAACTTCAGGGGCTACAACGGCATCCCTGTGGTGGAGGAACCCAAGAAGAGGAGATCAAAGGGGGAGAGGGGCGAAGAGCAGCAGAGGAGTGACACTTACGACGAAGATGATGAGGACACGTATGAATACGCGCAGACTGACTCTGAGCCCGAGTCAGAACCGGACCCGGAACCCCAGATACCCAGACAGGCTGTTCCCAACTCCAAGCCCTCAAAGAGACCCAGCGGACCATCTAAACCCGCCCCTCTACCCATGAACTTTGCAGAGCTGCTCAAACTGGCCCAGAAGAAGCAGTTTGAGCCAGTGGAGGTGAAAGCCAAGCCAAGCAAGAAGGGAGAGCCGGAGAGGCTGCGGACGGCTGATGAGATACGTGAGCTGGACCTGGAACGCAAGGCTAAGCGGCTTGATAAAGGTAGCAGAGACTCCAGACCccaggagagagaacgagatagAGATGGGGACAGAGATAGGAACAGAGATGGAAGAGACAAATCCCAGGCCAGCTCAAGCTCCTCAAGGAAAAGCACTTCTGACAGAGATGTAAGGAACGGGAAGCAGCCACACAAGAGCTTGTCGGAGAGGCCCGTCCCCAGTGGGTCGGGGAGGAAGCCAAAGCCCCTGCTGCCATCTTGCTCGTCGAGCGAGAGAAGCCACCATGGTTCTGCCAAGCCatcacaggacagagacagagaccgagataGAGAAAGGTCCAAAGCAAAACCTTCTCAGAGCTCCTCTTCCAGCTTGTCAGGTGCCTTAAGCAGAAAAGCCCCCACCAAAGGAGCCTCCTCTCAGGTCTCAGCCAAAACCCCCACACCCAGGCCCACTTCAGCAGGCCACAAACCCACTGCCACAAGTGACCTTAACACCCCCAGGAAGGGAAACGCCTCACTAACTCCAGGGCGACCCGGCAGCTCCGGGATGAGACCCAGCACAGCTCTGAGTTCCGTCCAGGCTAGACCACAGGGTTTGGGCCAAAGCAGGCCACAGCAAGGGGGCTCTTTGGGGCAGGCTCGAGCCAGCCAGGGCAGCTCAGTGAGGGGAGGACCCACCGGAGGACCCTCCAGGCCCGGAAAGGGAGTACCGGCACGACCTGGTGGTAGCTCCACGGCAAGACCAGCGAGTAACGAACAGATGAGACCCACTGCAGTCGGTCCTCTGAGGCCAGGGGGGCCACCTCAGGCCAGGCCGGGTGGAGGTGGTGTCCAAGGTCGCCCTGGTGGCGGAGGGGTCAGACCTCCAGGGAACGCACCCAGTCGGCCTGGGGGTGGGGGACCCGTGCCCAGGCGGCCAGCCAGCAGTATGGGCTCCGGGCCTGGGAGACCCAAATGCACTTTGGTGGCCGAGACCATCTCATCCAAGACCTTTGGTGGAGGCAGGGGAGCGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCCACCTAGTAGGCCAGGCATGCAGCCCAGCTCAATGATGAGACCTCAAGGCATGATTCGTTCACCAATCACCTCGGCCTACAAGAGGAAGTATGaggacgaggaggacgaggagtaCGACTCTGAGATGGAGGACTTCATCGACGATGAAGGGGAGGACCAAGACACAGTCTCCAAACACATCAAGGAAATCTTTGGCTACGACCGGACCAAATACAAAGAAGAGAGTGACTATGCATTAAAATTCATGGAGAGCAGTTGGAGAGACCAGCAAAAAGAGGAGGCTAGGAGTTTACGCCTGGGTAtcaaggaggatgaggaagagttgcgcttggaggaggaagagatgaaAAAGAAAATGTCAATGAATGCGAAACGGAAAAAAGTTTGAGGACACTAAGTTTAACACAAACACAATGCAGCCATttcctggagtggggggggggggtgtagggtGAATTTGCCCCTAGatgtcagtttagcattttccctgCTAGTGATAaggattgggggagggggagatgatCCTAAATCTGCACCTAGGGAAAACTTCACCCTGGAGTGGAATGGGGTGGTCAGACCAGTAGCCACTTGCTTCtgttacattatttatttttcccgTTGGAAAGGGGCAGGGTTGCACTATCAAGTGTTTCAGTCTTTTCCTAGCTGAGCCGCAGAGAAACGATTTAATATAATACCGATTATGACCTATTTTTGAAACCCATAGAAAATGACAGAGCTATCATGTAAAGTGTGATTGCCTTGCCAAGTTGTGAATGGCAATCATGTTGTATTTTttccccatacagaaccaaaaaCCCACTGgtccattttttaaatgtattcttCTTTAATGTAAAGGGGCagtcagcagttgaaacaataaagcGGTGTCCCCGCCTCTTGTTTCAGTAAATGCtgtgggatggggctggagaaatgtaaccactctcaaa

Function

GO: NA

KEGG:

id description
K15193 SPTY2D1, SPT2; protein SPT2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172238 lncRNA upstream 12289 46953612 ~ 46953847 (+) True G150324
TU172233 lncRNA upstream 23046 46942856 ~ 46943090 (+) True G150319
TU172231 lncRNA upstream 24687 46941181 ~ 46941449 (+) True G150317
TU172227 lncRNA upstream 34812 46931101 ~ 46931324 (+) True G150313
TU172136 lncRNA upstream 89059 46872295 ~ 46877077 (+) True G150227
TU172258 lncRNA downstream 25584 47006339 ~ 47006712 (+) True G150339
TU172397 lncRNA downstream 233343 47214098 ~ 47220529 (+) True G150467
TU172408 lncRNA downstream 246630 47227385 ~ 47230109 (+) True G150478
TU172418 lncRNA downstream 265891 47246646 ~ 47246955 (+) True G150488
TU172496 lncRNA downstream 366515 47347270 ~ 47347545 (+) True G150564
XM_036949734.1 mRNA upstream 834022 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1210153 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1497291 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1710293 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1710293 45203320 ~ 45255843 (+) True LOC110490546
XM_036949756.1 mRNA downstream 931 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 153460 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 154090 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 154090 47134845 ~ 47205441 (+) False cpt1ab
NM_001246330.1 mRNA downstream 180177 47160932 ~ 47203551 (+) True cpt1ab
TU169948 other upstream 1473757 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1493507 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2094636 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2536743 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2969071 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 964 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 517193 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1576027 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3117661 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4184660 51165415 ~ 51167174 (+) True G154859

Expression Profile