RNA id: XM_036933595.1


Basic Information

Item Value
RNA id XM_036933595.1
length 4380
RNA type mRNA
GC content 0.47
exon number 19
gene id cpt1ab
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47134215 ~ 47205441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCCTCACTTTCCATTCATACGGCGCCTTGCAACTGTCAACGCCGAGGGAGGTCTAACCAAGCCTCACAACCTTGGACACGTTCAAAGAAAGTCCTCTTTTACATTTTGCGTTGCTAATATACACGTTTGGAGAAAGGGCTGtgaCCCTGTACAGCAGCAGTCACCATGGCAGAAGCTCACCAGGCCGTGGCCTTTCAGTTCACTGTCGGGCCTGATGGCATTGACATGCAGCTGTGCCATGAGGCCCTGCGCCAGATATACCTCTCAGGCAAGCACTCCTGGAAGAAGAGGTTCATACGCTTCAAGAACGGGGTCATGACAGGCGTGTACCCAGGCAGCCCGTCTGGgtttttggtggtggtggtgagttaCATGTCGGGCACTAAATATGCCCAACTAGACCCCTCCCTGGGACTCATCACCAAACTGGGCACCCACATACCCATcagTCCGTACATGTCGGAGGACAGCCAgcgggtggtgggtggggtgCTGGTGGGCACAGGCCTGTGGGTCACCATCATCTTCATCATGAGGAATGCCCTCAAGTGCCTGCTGTCGTGGCACGGCTGGATGTACAACCGCCACGGATCTGTCTCCTGGGGCACTCGACTCTGGATATTATTTGTCAAGTTGTTCTCTGGCAGGAAGCCAATGCTGTACAGCTTCCAGAGTTCGCTGCCACGGCTGCCCGTCCCCCCGGTCAAGGACACCTGCAGGAGGTACTTGGAGTCAGCTCGTCCGTTGATGGATGACGAGCAGTATGTGAGGATGGAGGGGCTGGCAGGGGAATTTGAGAAGAACCTGGGCCCCAGACTACAGTGGTACCTCAAGCTCAAGTCCTGGTGGGCCTCCAACTATgtcaGTGATTGGTGGGAAGAGTACATCTACCTCCGAGGTCGTGGGCCCATCATGGTCAACAGTAACTACTACGCCATGgACTTCCTCTATGCGTTCCCCTCTCATATCCAGGCGGCGAGGGCGGGCAATGTCATCCATGCGATCATGCTGTACAGAAGGAAACTGGACCGAGCCCAGCTCAAACCAATTTACTTGCTGGCGAACAAGGTTCCTCTGTGCTCTGCCCAGTGGGAGCGCATGTTTAACACCACCCGCATTCCAGGCCAGGAGACAGACACTATTCAGCATGTGGACGAGAGCAAGCACATCGCCGTTTTCAACAAGGGGCGCTTCTTCAAGGTGTGGGTGTTCTACGATGGGCGCCTGCTGTTGCCGCGGGAGATCGAGCAGCAGATGGAGAGGATCCTGGCTGATAAGAGCGAGCCCCAGGAAGGGGAGGAGTACCTGGCTGCGCTCACCGCAGGGGAGAGGACACCATGGGCCAAAGCACGTGAAACCTACTTCAGAAGCGGCAAGAACAAGCAGTCACTGGATGCCATTGAGAAGGCTGCCTTCTTCGTAACCCTCGACGACTCAGAACAGAAATACGAGATCGACAACCCGGTGAAATCATTAGACAGCTACGCCAAGTCCCTCCTCCACGGCAAATGCTACGACAGGTGGTTTGACAAGTCCTTCAACCTCATCGTCTTCAAGAACGGAACCATGGGCCTGAATGCCGAGCATGCCTGGGCCGACGCACCAATCATAGGCCATCTCTGGGAGCAAGTCTTGTGCATGGACCCTCTGGAGCTGGGCTACACTGAGGAGGGCCACTGTAACGGGGAGCCCCACCCCAACCTGCCCGGACCCCAGAGGCTGCAGTGGGACATCCCTGCAGAGTGCCAGAGTACAATCCAGAGCTCTCTGAAGTTTGCCCAGGCACTGGCAGATGACGTGGACTCGCACATCTACCCCTTTAAGGACTTTGGCAAGGGTCTGATCAAGAAGTGCCGCACAAGCCCGGATGCGTTCATCCAGATTGCCCTGCAGCTCGCACACTTCAGGGATAAGGGCAAGTTCTGTCTAACGTACGAGGCATCGATGACACGGTTGTTCAGAGAGGGCCGTACGGAGACGGTGCGCTCCTGCACCATGGAGACCTGCGCCTTCGTCCGCTCCATGATCAGAGACGAGACGagAGAGGAGCGTATGAGACTACTGAAGGAGGCGTCAGAGAAGCATCAGAACATGTATCGTGAGGCCATGATAGGGAAGGGCATCGACCGTCACCTCTTCTGCCTTTACGTCATCTCCAAGTACCTGGGAGTGGACTCTCCCTTCCTCCATGAGGTTCTGTCAGAACCCTGGAGGCTGTCCACCAGTCAGACTCCAATGCAGCAGGTGGAACTTTTTGACCTGGTCAAACACCCTCATTATGTCACCTCCGGAGGAGGCTTTGGCCCGGTGGCTGATGACGGTTACGGAGTTTCCTACATCATTGTTGGAGAGGACCTCATCAACTTCCACATCTCCAGCAAACACTCTAGTCCAGAGACCgactcCCACCGCTTCATGGGTAACATTAAACAGGCCATGCTGGAACTTAAGGGTCTGTTTGACCTCAACAAGAAAGCCATCAAGTGATTTTTTCTCTCCTAatttgaagaaaataaaacaaacaatTGAAATATTTGTTAACAAAAAGGCATGCTCTTCCCGAAGCTTTTacattgaaattgttgcgtttttaTTTCTAAGTTaattatacattttcataacATTAATTAAGTGTGGAAAATATACATTTGAAATCATGCATATTTATGTCACATTTCGCTTTGTTGCTTTTTTCGTTTTGTTCTTGTGATGGGGTAGTTTTAACTGTATGTAGCGCACAGGTAAAAAATGTTAGTTTCTCTGCCTGACTGTATACACCAGTGCCTTAGTGGCCCACTAATGGAGAGAGAGGCAATGAGAGAGGACAGTGAGCGGGAGTACTTTcaagttgcccctagacactgatctaaatTCATTTTTGCATTTTGTTCCTCTAATGATGAAGGTAATATTTGAGtagggtaaactgatcctagatctataTTGTTATTTATCGTGTGTACTGCCAGTTTTATCTTATTTTAGCTGCTATGTTTTTATGACTAGTGATAAAGTTGTTTATTTTGTTGTGTGGTCAATTTCATACTCAGGTTTTTTAACTTGGCGTAGTTTTAGGGTTCAGTTTGCCACAGCATTACAGGTTTGGCGTGTACAGTAAGGTTTCGGGATACACTACTACTGCTGAATTCCAAATGGAACTCTAGCCTCTAACTTCTATCTTCTGTAGATCTGAAAATATTTAAGTGTATGGTGAAAATTCCACTTAGCCTCTCCAAGGGCTAGATGGCGTAATTACCATAATGATTGTCTAGGGGTAAAAAAGCAATTTAGAATACAGAATATTACGCTTCACAGCAGATAGTCGTTCGAAGTAAACATGGATATTTGTGTTTCAGTAGAAGGAAGATATGGTATCGTTTGGGAGTAATCTCGCCTGGGCCAAGTTCAGCATGGCACAATGTTGTGGAacgtagaacaaacatgcctctctaaCATGTAAAAAGAGGAATCACTTCAAATCATGACATTCCTAAATGTTTGCCTACTGAACATGGCCCTGCGTTGCATGTTCAATTCTGAATCCTCTCATTGCAGCTGTTGATGGGTTAGGGGTGGTCACTGCACTTTTTGTTTGTCAGCGCTCTACAGGACTGGCCCTTCAGATCACACTAGCCTAACTGCCTTTGTAGCCTTTACCCATGGTTGttttcattagggcacaccgtagcaaaacattttgcaacagaaagcGAAAACAAGCATTTCTTGTTGGACTGTTTTTTTCTTCAGTTTTGTGtataatgaacacgacccaggtctCAGACCACAGACGATCTGACTATATCTGCTTATAAAGGGACTTTTCATCCAGGGGTGAACTGTCATGATGTATATCATAAGAATGTCAACCAACTGTGTTGTAGTTCTGTTTGTTGTAGATAATTTTTTCAAGTGAAGAGACTGTCGTATTTCACCAACATGAACACAGTGTCTCAAGAGACTTGCAGTGTGTTGAATGTGAACATATTTGGAAACTATTGGGGCAGTACACAGATGCAGGATACATAGGATTAGACAATGGTGTATAGGACTATACTACATAGGAAAGACTTTAAAAAATGTAGTAGGCTAACTTGTAACCAATATCAATTCTTTGCTTATTTAGGTATTGAAAAGGAAATTTTATTTTAtgattaaaaaacatttttgacatgccTTTGTTATTCCTGACTTTGTTATTGCATACATGGAAAACAATCTATTGTAGTTGTAATACAACTTCTCACAGTAGACCCGTTTACACGTCTGCCTGGTTTGGATGAAGAAGCTAGCTAATTTAAAGATATGTGCAAAAAGACAAGCAGCTGAAATACCAAAACTTTTTAACCCAATAAAAGCGAATGTCAACCAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172258 lncRNA upstream 128133 47006339 ~ 47006712 (+) True G150339
TU172238 lncRNA upstream 180998 46953612 ~ 46953847 (+) True G150324
TU172233 lncRNA upstream 191755 46942856 ~ 46943090 (+) True G150319
TU172231 lncRNA upstream 193396 46941181 ~ 46941449 (+) True G150317
TU172227 lncRNA upstream 203521 46931101 ~ 46931324 (+) True G150313
TU172397 lncRNA downstream 8657 47214098 ~ 47220529 (+) True G150467
TU172408 lncRNA downstream 21944 47227385 ~ 47230109 (+) True G150478
TU172418 lncRNA downstream 41205 47246646 ~ 47246955 (+) True G150488
TU172496 lncRNA downstream 141829 47347270 ~ 47347545 (+) True G150564
TU172498 lncRNA downstream 144380 47349821 ~ 47350035 (+) True G150566
XM_036949756.1 mRNA upstream 127173 46981686 ~ 47007672 (+) False uevld
XM_021564096.2 mRNA upstream 154090 46966136 ~ 46980755 (+) True spty2d1
XM_036949734.1 mRNA upstream 1002731 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1378862 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1666000 45444073 ~ 45468845 (+) True tsg101a
NM_001124697.1 mRNA downstream 162739 47368180 ~ 47373699 (+) True igf2b
XM_036949781.1 mRNA downstream 821968 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 822021 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 822021 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 822021 48027462 ~ 48133974 (+) False osbpl5
TU172245 other upstream 149619 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 1642466 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1662216 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2263345 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2705452 44429153 ~ 44429393 (+) True G146841
TU172952 other downstream 292507 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1351341 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2892975 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3959974 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 4116355 51321796 ~ 51322433 (+) True LOC110501653

Expression Profile